Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001961

Physical Location & Seq

Genomic Coordinates Forward (+)

20280159 .. 20282498

Gene Structure 2340 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0204300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGACGAGTTCTCCTCGGTCATCTGCTGATTTTATAGCGTTTGTTGATCGTGTACTTCTTGTTTGTGACTCATCCGCCATTCAAAGATTCCATCTTCATTTCAATAATTGCCATGCTGAGCATTTTTCTCAAATTGATGGTTGGATTAGTACTGCCGTCAGGTACAATGTGGTGGAACTAGATCTTTCTATCGATTTAGAAGAAGACGATATGTTTGAGTTGCCTATAAGCCTTTTGACTTGCAAGACACTGAAGGTTTTGAGCCTGAGGTCGATGTTTATCATCAATATGCCTACATCAGTGTGTTACTGTTTTCCAAGCCTGGAGTTCCTCCATATGCATTTTACAGTTACTTACCGTGATAAAATCTCCATGGATTTGTTTCATTTCCCTGTTCTTGAATATTTATCCATAGATGGAGATCTTGGACACAACTTATTGGACTTCAACATCTCTGCGCCTGAGTTGAAGACATTAAGGATAGATTTGTACAGTTCAGATTATATGCATGATCGATCTCTGGAAAAACTTGATCTCCAAGAGGGTTCTCTATCGAATTTTAATTTTAACAACACAAAATCATTAGTCGAAGCCAATCTGTATATATATCCCAATGAAGGTTATGTAGAAGAGGACTCTGTTAAACGTGCAACTGAGTTTCTGGCACAAATTTCGACGGTGAAATATCTGTCTCTTTCATGGAGCATTTATCAGGCTTGCTCTGTGCCTCCTTTTGATAGTTTGAGCAAATTGAGGCTGGTTCATTCTAGGAGCTCTTACTGGTGGAGAACTTTAATGAGGTTGCTAGAGAGATCACCTAACCTAGAGTGTCTTGCAATAGACGACTGCTCTTATCAAACTCGAAGACAGCTGGAAGAGGAGGTGATTGAACATGCTGACAAAGGAGCAGAGGTGATTGAACAAGCTGAGAATGGGCCGGAGGTGATTGAACGAGCTGAGAATGGACTGGAGGTGATTGATCTTAGAGAGCAAATAGCAGCACTAGTACGTACTCTGAACTGGGTTCCACCAGATTCTATTCCCAAATGTTTGCCGTCACACCTGAAGACCATCTCCATTAACGGATTCTATGGAAAGGGAACGATTGGATATCTGGATGAGATGGAGTTGATCAAGTATTTATTAAAGAATGGTAGAGTTTTGGAGAAGATGACTATTTATACTCCTGGTCTACATAGGGGTACAAAAGAGGAGTTCTTCGATGAACTTTCAATGTTTGAATGGGGTTCAAAGACTGTTCAAGTTGAAATGATCGAGGAGATATCTTATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS CorC_HlyC DUF21

Protein Analysis

431

Amino Acids

49.75

Weight (kDa)

4.88

Isoelectric Point (pI)

46.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At1g61320_AtMIF1	PF23622	27 - 288	2.7e-08	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	45 - 162	4.9e-08	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	344 - 393	6.8e-13	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00925
fragaria_vesca	FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130
rosa_chinensis	RchiOBHm_Chr5g0042791 RchiOBHm_Chr5g0042841 RchiOBHm_Chr5g0043091 RchiOBHm_Chr5g0043121 RchiOBHm_Chr5g0043141
rosa_laevigata	RLG00000034152 RLG00000034154 RLG00000034159 RLG00000034161 RLG00000034162 RLG00000034165
rosa_multiflora	Rmu_sc0000493.1_g000029 Rmu_sc0002079.1_g000002 Rmu_sc0004950.1_g000009 Rmu_sc0008148.1_g000050 Rmu_sc0027101.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037670 Rroxscaffold_1G00037710 Rroxscaffold_1G00037760 Rroxscaffold_1G00037830 Rroxscaffold_7G00212010
rosa_rugosa	Rorug03G0298700 Rorug05G0204300 Rorug05G0204500 Rorug05G0276100 Rorug05G0308400
rosa_samantha	Rh5AG289500 Rh5BG293600 Rh5BG293900 Rh5BG295600 Rh5BG295800 Rh5BG296100 Rh5CG290900 Rh5CG326200 Rh5DG303600 Rh5DG305300 Rh6AG419200 Rh6BG071100
rosa_wichuraiana	Rw5G026820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1192
AciI	CCGC	1 cut(s)	75
AcsI	RAATTY	2 cut(s)	556, 669
AcuI	CTGAAG	2 cut(s)	272, 1085
AfaI	GTAC	7 cut(s)	54, 151, 164, 491, 1008, 1012, 1204
AfiI	CCNNNNNNNGG	1 cut(s)	617
AhlI	ACTAGT	1 cut(s)	1003
AjnI	CCWGG	2 cut(s)	321, 1186
AluBI	AGCT	4 cut(s)	774, 871, 926, 956
AluI	AGCT	4 cut(s)	774, 871, 926, 956
Alw21I	GWGCWC	1 cut(s)	776
Alw26I	GTCTC	1 cut(s)	696
AoxI	GGCC	1 cut(s)	935
ApeKI	GCWGC	1 cut(s)	998
ApoI	RAATTY	2 cut(s)	556, 669
ArsI	GACNNNNNNTTYG	2 cut(s)	197, 229
AspLEI	GCGC	1 cut(s)	460
AspS9I	GGNCC	1 cut(s)	935
AsuHPI	GGTGA	6 cut(s)	691, 807, 895, 925, 955, 985
AxyI	CCTNAGG	1 cut(s)	266
BanII	GRGCYC	1 cut(s)	776
BbsI	GAAGAC	4 cut(s)	210, 476, 871, 1073
Bbv12I	GWGCWC	1 cut(s)	776
BbvI	GCAGC	1 cut(s)	1010
BccI	CCATC	5 cut(s)	99, 131, 410, 1079, 1117
BceAI	ACGGC	2 cut(s)	140, 1039
BcgI	CGANNNNNNTGC	2 cut(s)	654, 688
BciT130I	CCWGG	2 cut(s)	323, 1188
BclI	TGATCA	1 cut(s)	1131
BcoDI	GTCTC	1 cut(s)	696
BcuI	ACTAGT	1 cut(s)	1003
BfaI	CTAG	5 cut(s)	179, 768, 806, 824, 1004
BglII	AGATCT	2 cut(s)	181, 421
BisI	GCNGC	1 cut(s)	999
BlpI	GCTNAGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	1000
BmcAI	AGTACT	1 cut(s)	151
Bme1390I	CCNGG	2 cut(s)	323, 1188
BmgT120I	GGNCC	1 cut(s)	935
BmiI	GGNNCC	1 cut(s)	1026
BmrFI	CCNGG	2 cut(s)	323, 1188
BmrI	ACTGGG	1 cut(s)	1030
BmuI	ACTGGG	1 cut(s)	1030
BpiI	GAAGAC	4 cut(s)	210, 476, 871, 1073
BplI	GAGNNNNNCTC	1 cut(s)	30
BpmI	CTGGAG	2 cut(s)	344, 989
Bpu1102I	GCTNAGC	1 cut(s)	117
Bsa29I	ATCGAT	2 cut(s)	192, 514
BsaAI	YACGTR	1 cut(s)	1010
BsaBI	GATNNNNATC	2 cut(s)	278, 420
BsaJI	CCNNGG	2 cut(s)	14, 372
BsaXI	ACNNNNNCTCC	5 cut(s)	25, 519, 549, 897, 927
Bsc4I	CCNNNNNNNGG	1 cut(s)	617
Bse1I	ACTGG	3 cut(s)	785, 972, 1025
Bse21I	CCTNAGG	1 cut(s)	266
Bse8I	GATNNNNATC	2 cut(s)	278, 420
BseBI	CCWGG	2 cut(s)	323, 1188
BseCI	ATCGAT	2 cut(s)	192, 514
BseDI	CCNNGG	2 cut(s)	14, 372
BseGI	GGATG	2 cut(s)	71, 1123
BseJI	GATNNNNATC	2 cut(s)	278, 420
BseLI	CCNNNNNNNGG	1 cut(s)	617
BseMII	CTCAG	6 cut(s)	108, 257, 453, 645, 918, 948
BseNI	ACTGG	3 cut(s)	785, 972, 1025
BseRI	GAGGAG	3 cut(s)	893, 1226, 1292
BseXI	GCAGC	1 cut(s)	1010
BshFI	GGCC	1 cut(s)	937
BshVI	ATCGAT	2 cut(s)	192, 514
BsiHKAI	GWGCWC	1 cut(s)	776
BsiSI	CCGG	1 cut(s)	938
BslI	CCNNNNNNNGG	1 cut(s)	617
BsmAI	GTCTC	1 cut(s)	696
BsnI	GGCC	1 cut(s)	937
Bsp1286I	GDGCHC	1 cut(s)	776
Bsp1407I	TGTACA	1 cut(s)	489
Bsp1720I	GCTNAGC	1 cut(s)	117
Bsp19I	CCATGG	1 cut(s)	372
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	1 cut(s)	937
BspCNI	CTCAG	6 cut(s)	109, 258, 454, 646, 919, 949
BspDI	ATCGAT	2 cut(s)	192, 514
BspLI	GGNNCC	1 cut(s)	1026
BsrGI	TGTACA	1 cut(s)	489
BsrI	ACTGG	3 cut(s)	785, 972, 1025
BssECI	CCNNGG	2 cut(s)	14, 372
BssT1I	CCWWGG	1 cut(s)	372
Bst2UI	CCWGG	2 cut(s)	323, 1188
Bst4CI	ACNGT	6 cut(s)	311, 349, 359, 494, 679, 1258
Bst6I	CTCTTC	2 cut(s)	624, 870
BstAUI	TGTACA	1 cut(s)	489
BstBAI	YACGTR	1 cut(s)	1010
BstC8I	GCNNGC	1 cut(s)	718
BstDEI	CTNAG	7 cut(s)	117, 266, 462, 654, 927, 957, 983
BstDSI	CCRYGG	1 cut(s)	372
BstF5I	GGATG	2 cut(s)	71, 1123
BstHHI	GCGC	1 cut(s)	460
BstMAI	GTCTC	1 cut(s)	696
BstNI	CCWGG	2 cut(s)	323, 1188
BstNSI	RCATGY	1 cut(s)	896
BstSCI	CCNGG	2 cut(s)	321, 1186
BstSNI	TACGTA	1 cut(s)	1010
BstV1I	GCAGC	1 cut(s)	1010
BstV2I	GAAGAC	4 cut(s)	210, 476, 871, 1073
BstX2I	RGATCY	2 cut(s)	181, 421
BstYI	RGATCY	2 cut(s)	181, 421
Bsu15I	ATCGAT	2 cut(s)	192, 514
Bsu36I	CCTNAGG	1 cut(s)	266
BsuRI	GGCC	1 cut(s)	937
BsuTUI	ATCGAT	2 cut(s)	192, 514
BtgI	CCRYGG	1 cut(s)	372
BtsCI	GGATG	2 cut(s)	71, 1123
BtsIMutI	CAGTG	2 cut(s)	248, 306
Cac8I	GCNNGC	1 cut(s)	718
CfoI	GCGC	1 cut(s)	460
Cfr13I	GGNCC	1 cut(s)	935
ClaI	ATCGAT	2 cut(s)	192, 514
Csp6I	GTAC	7 cut(s)	53, 150, 163, 490, 1007, 1011, 1203
CviAII	CATG	5 cut(s)	113, 373, 509, 699, 893
CviQI	GTAC	7 cut(s)	53, 150, 163, 490, 1007, 1011, 1203
DdeI	CTNAG	7 cut(s)	117, 266, 462, 654, 927, 957, 983
Eam1104I	CTCTTC	2 cut(s)	624, 870
EarI	CTCTTC	2 cut(s)	624, 870
EciI	GGCGGA	1 cut(s)	64
Ecl136II	GAGCTC	1 cut(s)	774
Eco105I	TACGTA	1 cut(s)	1010
Eco130I	CCWWGG	1 cut(s)	372
Eco24I	GRGCYC	1 cut(s)	776
Eco32I	GATATC	2 cut(s)	1112, 1284
Eco53kI	GAGCTC	1 cut(s)	774
Eco57I	CTGAAG	2 cut(s)	272, 1085
Eco81I	CCTNAGG	1 cut(s)	266
EcoICRI	GAGCTC	1 cut(s)	774
EcoRII	CCWGG	2 cut(s)	321, 1186
EcoRV	GATATC	2 cut(s)	1112, 1284
EcoT14I	CCWWGG	1 cut(s)	372
EcoT22I	ATGCAT	2 cut(s)	342, 510
EcoT38I	GRGCYC	1 cut(s)	776
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	5 cut(s)	116, 376, 512, 702, 896
FatI	CATG	5 cut(s)	112, 372, 508, 698, 892
FauNDI	CATATG	1 cut(s)	336
FbaI	TGATCA	1 cut(s)	1131
FblI	GTMKAC	1 cut(s)	1192
Fnu4HI	GCNGC	1 cut(s)	999
FokI	GGATG	2 cut(s)	58, 1130
FriOI	GRGCYC	1 cut(s)	776
Fsp4HI	GCNGC	1 cut(s)	999
FspBI	CTAG	5 cut(s)	179, 768, 806, 824, 1004
GlaI	GCGC	1 cut(s)	459
GluI	GCNGC	1 cut(s)	999
GsuI	CTGGAG	2 cut(s)	344, 989
HaeIII	GGCC	1 cut(s)	937
HapII	CCGG	1 cut(s)	938
HhaI	GCGC	1 cut(s)	460
Hin1II	CATG	5 cut(s)	116, 376, 512, 702, 896
Hin6I	GCGC	1 cut(s)	458
HinP1I	GCGC	1 cut(s)	458
HinfI	GANTC	5 cut(s)	68, 87, 635, 1034, 1086
HpaII	CCGG	1 cut(s)	938
HphI	GGTGA	6 cut(s)	691, 807, 895, 925, 955, 985
Hpy166II	GTNNAC	2 cut(s)	53, 1193
Hpy188I	TCNGA	2 cut(s)	499, 1017
Hpy188III	TCNNGA	3 cut(s)	398, 521, 1115
Hpy8I	GTNNAC	2 cut(s)	53, 1193
Hpy99I	CGWCG	1 cut(s)	679
HpyAV	CCTTC	2 cut(s)	247, 611
HpyCH4III	ACNGT	6 cut(s)	311, 349, 359, 494, 679, 1258
HpyCH4IV	ACGT	2 cut(s)	646, 1009
HpyCH4V	TGCA	5 cut(s)	243, 340, 508, 650, 836
HpyF3I	CTNAG	7 cut(s)	117, 266, 462, 654, 927, 957, 983
HpySE526I	ACGT	2 cut(s)	646, 1009
Hsp92II	CATG	5 cut(s)	116, 376, 512, 702, 896
HspAI	GCGC	1 cut(s)	458
Ksp22I	TGATCA	1 cut(s)	1131
LmnI	GCTCC	3 cut(s)	702, 771, 905
Lsp1109I	GCAGC	1 cut(s)	1010
MaeI	CTAG	5 cut(s)	179, 768, 806, 824, 1004
MaeII	ACGT	2 cut(s)	646, 1009
MaeIII	GTNAC	4 cut(s)	65, 305, 349, 1056
MflI	RGATCY	2 cut(s)	181, 421
MhlI	GDGCHC	1 cut(s)	776
MluCI	AATT	6 cut(s)	106, 132, 556, 562, 669, 749
MlyI	GAGTC	2 cut(s)	62, 629
MmeI	TCCRAC	1 cut(s)	122
Mph1103I	ATGCAT	2 cut(s)	342, 510
MseI	TTAA	7 cut(s)	476, 561, 567, 642, 794, 1080, 1145
MslI	CAYNNNNRTG	2 cut(s)	287, 301
MspA1I	CMGCKG	1 cut(s)	871
MspI	CCGG	1 cut(s)	938
MspR9I	CCNGG	2 cut(s)	323, 1188
MvaI	CCWGG	2 cut(s)	323, 1188
NcoI	CCATGG	1 cut(s)	372
NdeI	CATATG	1 cut(s)	336
NlaIII	CATG	5 cut(s)	116, 376, 512, 702, 896
NlaIV	GGNNCC	1 cut(s)	1026
NmuCI	GTSAC	2 cut(s)	65, 1056
NsiI	ATGCAT	2 cut(s)	342, 510
NspI	RCATGY	1 cut(s)	896
PfeI	GAWTC	3 cut(s)	87, 1034, 1086
PkrI	GCNGC	1 cut(s)	1000
PleI	GAGTC	2 cut(s)	62, 629
PpsI	GAGTC	2 cut(s)	62, 629
Ppu21I	YACGTR	1 cut(s)	1010
Psp124BI	GAGCTC	1 cut(s)	776
Psp6I	CCWGG	2 cut(s)	321, 1186
PspGI	CCWGG	2 cut(s)	321, 1186
PspN4I	GGNNCC	1 cut(s)	1026
PspPI	GGNCC	1 cut(s)	935
PsuI	RGATCY	2 cut(s)	181, 421
PvuII	CAGCTG	1 cut(s)	871
RsaI	GTAC	7 cut(s)	54, 151, 164, 491, 1008, 1012, 1204
RsaNI	GTAC	7 cut(s)	53, 150, 163, 490, 1007, 1011, 1203
RseI	CAYNNNNRTG	2 cut(s)	287, 301
SacI	GAGCTC	1 cut(s)	776
SaqAI	TTAA	7 cut(s)	476, 561, 567, 642, 794, 1080, 1145
SatI	GCNGC	1 cut(s)	999
Sau96I	GGNCC	1 cut(s)	935
ScaI	AGTACT	1 cut(s)	151
SchI	GAGTC	2 cut(s)	62, 629
ScrFI	CCNGG	2 cut(s)	323, 1188
SduI	GDGCHC	1 cut(s)	776
SmiMI	CAYNNNNRTG	2 cut(s)	287, 301
SnaBI	TACGTA	1 cut(s)	1010
SpeI	ACTAGT	1 cut(s)	1003
Sse9I	AATT	6 cut(s)	106, 132, 556, 562, 669, 749
SsiI	CCGC	1 cut(s)	75
SspI	AATATT	1 cut(s)	404
SspMI	CTAG	5 cut(s)	179, 768, 806, 824, 1004
SstI	GAGCTC	1 cut(s)	776
StyD4I	CCNGG	2 cut(s)	321, 1186
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	6 cut(s)	311, 349, 359, 494, 679, 1258
TaiI	ACGT	2 cut(s)	649, 1012
TaqI	TCGA	9 cut(s)	192, 272, 514, 554, 588, 674, 862, 1221, 1275
TaqII	GACCGA	1 cut(s)	6
TasI	AATT	6 cut(s)	106, 132, 556, 562, 669, 749
TatI	WGTACW	3 cut(s)	52, 149, 489
TfiI	GAWTC	3 cut(s)	87, 1034, 1086
Tru1I	TTAA	7 cut(s)	476, 561, 567, 642, 794, 1080, 1145
Tru9I	TTAA	7 cut(s)	476, 561, 567, 642, 794, 1080, 1145
TscAI	CASTG	2 cut(s)	255, 306
TseFI	GTSAC	2 cut(s)	65, 1056
TseI	GCWGC	1 cut(s)	998
Tsp45I	GTSAC	2 cut(s)	65, 1056
TspDTI	ATGAA	6 cut(s)	86, 374, 630, 687, 752, 1239
TspGWI	ACGGA	1 cut(s)	1098
TspRI	CASTG	2 cut(s)	255, 306
XapI	RAATTY	2 cut(s)	556, 669
XceI	RCATGY	1 cut(s)	896
XmiI	GTMKAC	1 cut(s)	1192
XspI	CTAG	5 cut(s)	179, 768, 806, 824, 1004
ZrmI	AGTACT	1 cut(s)	151
Zsp2I	ATGCAT	2 cut(s)	342, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.