Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001961

Physical Location & Seq

Genomic Coordinates Reverse (-)

36076662 .. 36077222

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0308400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGAGACTGCTACAATAGCAAGGTGTAGTTATCGTGCGGTCACTGTCGTCATTCCATTGTTTGAACATACTAAATATGCAGATATTTGTAATGAGATAAGTTCAAGGTTTAAGGAATTGGAAGTAAGGGGTTTTGAGCTGACATTTTCTCTTCCTGAGCATCCTAATTGCATGTTGAAATCTGATATGGACGTGCACTTGATGCGAATGTGTTTATCCATGTTGAAGAGTCGTTTTGTTGATATATTGGTAAAGGATCTTGGGAGTTCAAATAAGGAGGATGTTGCTCATGCAATGTCTGATCATGCAGCCTCCCGTCAAGCAGCACGTAATCCTGCATTCTCTAATCATTCAGTGTCTAATTGTGCAGCTTTTAATACTGCAGCATCTGATCTGGCAGTGCCTAATCATGAAATGTCTAGTGATGCAGCATCTAACCATGCAACTTCTGATCATGCAGCCTCGGATACTGCACCGCCTAACCATGGAACATCTAATCATTCATCACCTACTCCTGCAATACCTGATCTTGCAGCATCTAATCATGTATCATTATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS CorC_HlyC DUF21

Protein Analysis

186

Amino Acids

20.08

Weight (kDa)

5.89

Isoelectric Point (pI)

31.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00925
fragaria_vesca	FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130
rosa_chinensis	RchiOBHm_Chr5g0042791 RchiOBHm_Chr5g0042841 RchiOBHm_Chr5g0043091 RchiOBHm_Chr5g0043121 RchiOBHm_Chr5g0043141
rosa_laevigata	RLG00000034152 RLG00000034154 RLG00000034159 RLG00000034161 RLG00000034162 RLG00000034165
rosa_multiflora	Rmu_sc0000493.1_g000029 Rmu_sc0002079.1_g000002 Rmu_sc0004950.1_g000009 Rmu_sc0008148.1_g000050 Rmu_sc0027101.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037670 Rroxscaffold_1G00037710 Rroxscaffold_1G00037760 Rroxscaffold_1G00037830 Rroxscaffold_7G00212010
rosa_rugosa	Rorug03G0298700 Rorug05G0204300 Rorug05G0204500 Rorug05G0276100 Rorug05G0308400
rosa_samantha	Rh5AG289500 Rh5BG293600 Rh5BG293900 Rh5BG295600 Rh5BG295800 Rh5BG296100 Rh5CG290900 Rh5CG326200 Rh5DG303600 Rh5DG305300 Rh6AG419200 Rh6BG071100
rosa_wichuraiana	Rw5G026820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	38, 476
AclWI	GGATC	1 cut(s)	264
AfiI	CCNNNNNNNGG	1 cut(s)	485
AgsI	TTSAA	5 cut(s)	65, 105, 178, 226, 270
AjiI	CACGTC	1 cut(s)	193
AluBI	AGCT	2 cut(s)	139, 371
AluI	AGCT	2 cut(s)	139, 371
Alw21I	GWGCWC	1 cut(s)	198
Alw44I	GTGCAC	1 cut(s)	194
AlwI	GGATC	1 cut(s)	264
AlwNI	CAGNNNCTG	1 cut(s)	389
ApaLI	GTGCAC	1 cut(s)	194
ApeKI	GCWGC	7 cut(s)	308, 323, 368, 383, 428, 458, 533
AsuHPI	GGTGA	1 cut(s)	498
BaeGI	GKGCMC	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	7 cut(s)	320, 335, 380, 395, 440, 470, 545
BciVI	GTATCC	1 cut(s)	460
BclI	TGATCA	2 cut(s)	301, 451
BfaI	CTAG	1 cut(s)	420
BfmI	CTRYAG	1 cut(s)	381
BfuI	GTATCC	1 cut(s)	460
BisI	GCNGC	7 cut(s)	309, 324, 369, 384, 429, 459, 534
BlsI	GCNGC	7 cut(s)	310, 325, 370, 385, 430, 460, 535
BmgBI	CACGTC	1 cut(s)	193
BmsI	GCATC	6 cut(s)	169, 192, 395, 415, 440, 545
Bpu10I	CCTNAGC	1 cut(s)	156
BsaAI	YACGTR	1 cut(s)	329
BsaJI	CCNNGG	2 cut(s)	462, 484
Bsc4I	CCNNNNNNNGG	1 cut(s)	485
Bse3DI	GCAATG	1 cut(s)	300
BseDI	CCNNGG	2 cut(s)	462, 484
BseGI	GGATG	2 cut(s)	160, 286
BseLI	CCNNNNNNNGG	1 cut(s)	485
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	147
BseSI	GKGCMC	1 cut(s)	198
BseXI	GCAGC	7 cut(s)	320, 335, 380, 395, 440, 470, 545
BsgI	GTGCAG	2 cut(s)	387, 456
BsiHKAI	GWGCWC	1 cut(s)	198
BslI	CCNNNNNNNGG	1 cut(s)	485
BsmI	GAATGC	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	5 cut(s)	256, 301, 391, 451, 526
Bsp19I	CCATGG	1 cut(s)	484
BspACI	CCGC	2 cut(s)	38, 476
BspCNI	CTCAG	1 cut(s)	148
BspHI	TCATGA	1 cut(s)	409
BspMAI	CTGCAG	1 cut(s)	385
BspPI	GGATC	1 cut(s)	264
BsrDI	GCAATG	1 cut(s)	300
BssECI	CCNNGG	2 cut(s)	462, 484
BssMI	GATC	5 cut(s)	256, 301, 391, 451, 526
BssT1I	CCWWGG	1 cut(s)	484
Bst4CI	ACNGT	1 cut(s)	46
Bst6I	CTCTTC	2 cut(s)	156, 221
BstAPI	GCANNNNNTGC	1 cut(s)	202
BstBAI	YACGTR	1 cut(s)	329
BstDEI	CTNAG	1 cut(s)	156
BstDSI	CCRYGG	1 cut(s)	484
BstF5I	GGATG	2 cut(s)	160, 286
BstKTI	GATC	5 cut(s)	259, 304, 394, 454, 529
BstMBI	GATC	5 cut(s)	256, 301, 391, 451, 526
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 202
BstNSI	RCATGY	1 cut(s)	175
BstSFI	CTRYAG	1 cut(s)	381
BstSLI	GKGCMC	1 cut(s)	198
BstV1I	GCAGC	7 cut(s)	320, 335, 380, 395, 440, 470, 545
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BsuI	GTATCC	1 cut(s)	460
BtgI	CCRYGG	1 cut(s)	484
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	2 cut(s)	160, 286
BtsI	GCAGTG	1 cut(s)	405
BtsIMutI	CAGTG	3 cut(s)	42, 360, 405
CaiI	CAGNNNCTG	1 cut(s)	389
CciI	TCATGA	1 cut(s)	409
CviAII	CATG	9 cut(s)	172, 220, 290, 305, 410, 440, 455, 485, 545
CviJI	RGCY	4 cut(s)	139, 311, 371, 461
CviKI_1	RGCY	4 cut(s)	139, 311, 371, 461
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	5 cut(s)	258, 303, 393, 453, 528
DpnII	GATC	5 cut(s)	256, 301, 391, 451, 526
Eam1104I	CTCTTC	2 cut(s)	156, 221
EarI	CTCTTC	2 cut(s)	156, 221
Eco130I	CCWWGG	1 cut(s)	484
EcoT14I	CCWWGG	1 cut(s)	484
ErhI	CCWWGG	1 cut(s)	484
FaeI	CATG	9 cut(s)	175, 223, 293, 308, 413, 443, 458, 488, 548
FatI	CATG	9 cut(s)	171, 219, 289, 304, 409, 439, 454, 484, 544
FbaI	TGATCA	2 cut(s)	301, 451
Fnu4HI	GCNGC	7 cut(s)	309, 324, 369, 384, 429, 459, 534
FokI	GGATG	2 cut(s)	147, 293
Fsp4HI	GCNGC	7 cut(s)	309, 324, 369, 384, 429, 459, 534
FspBI	CTAG	1 cut(s)	420
GluI	GCNGC	7 cut(s)	309, 324, 369, 384, 429, 459, 534
Hin1II	CATG	9 cut(s)	175, 223, 293, 308, 413, 443, 458, 488, 548
HinfI	GANTC	1 cut(s)	229
HphI	GGTGA	1 cut(s)	498
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	5 cut(s)	184, 301, 391, 451, 466
Hpy188III	TCNNGA	3 cut(s)	155, 410, 558
Hpy8I	GTNNAC	1 cut(s)	196
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4IV	ACGT	2 cut(s)	192, 328
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 202
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	2 cut(s)	192, 328
Hsp92II	CATG	9 cut(s)	175, 223, 293, 308, 413, 443, 458, 488, 548
Ksp22I	TGATCA	2 cut(s)	301, 451
Kzo9I	GATC	5 cut(s)	256, 301, 391, 451, 526
LpnPI	CCDG	5 cut(s)	168, 348, 380, 528, 537
Lsp1109I	GCAGC	7 cut(s)	320, 335, 380, 395, 440, 470, 545
LweI	GCATC	6 cut(s)	169, 192, 395, 415, 440, 545
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	2 cut(s)	192, 328
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	5 cut(s)	258, 303, 393, 453, 528
MboI	GATC	5 cut(s)	256, 301, 391, 451, 526
MboII	GAAGA	2 cut(s)	143, 238
MflI	RGATCY	1 cut(s)	256
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	3 cut(s)	116, 166, 361
MlyI	GAGTC	1 cut(s)	238
MnlI	CCTC	3 cut(s)	271, 322, 472
MseI	TTAA	2 cut(s)	111, 375
MslI	CAYNNNNRTG	1 cut(s)	556
Mva1269I	GAATGC	1 cut(s)	338
MwoI	GCNNNNNNNGC	2 cut(s)	17, 202
NcoI	CCATGG	1 cut(s)	484
NdeII	GATC	5 cut(s)	256, 301, 391, 451, 526
NlaIII	CATG	9 cut(s)	175, 223, 293, 308, 413, 443, 458, 488, 548
NmuCI	GTSAC	1 cut(s)	40
NspI	RCATGY	1 cut(s)	175
PagI	TCATGA	1 cut(s)	409
PctI	GAATGC	1 cut(s)	338
PkrI	GCNGC	7 cut(s)	310, 325, 370, 385, 430, 460, 535
PleI	GAGTC	1 cut(s)	237
PpsI	GAGTC	1 cut(s)	237
Ppu21I	YACGTR	1 cut(s)	329
PstI	CTGCAG	1 cut(s)	385
PstNI	CAGNNNCTG	1 cut(s)	389
PsuI	RGATCY	1 cut(s)	256
RseI	CAYNNNNRTG	1 cut(s)	556
SaqAI	TTAA	2 cut(s)	111, 375
SatI	GCNGC	7 cut(s)	309, 324, 369, 384, 429, 459, 534
Sau3AI	GATC	5 cut(s)	256, 301, 391, 451, 526
SchI	GAGTC	1 cut(s)	238
SduI	GDGCHC	1 cut(s)	198
SetI	ASST	8 cut(s)	26, 110, 141, 195, 331, 373, 511, 526
SfaNI	GCATC	6 cut(s)	169, 192, 395, 415, 440, 545
SfcI	CTRYAG	1 cut(s)	381
SmiMI	CAYNNNNRTG	1 cut(s)	556
Sse9I	AATT	3 cut(s)	116, 166, 361
SsiI	CCGC	2 cut(s)	38, 476
SspMI	CTAG	1 cut(s)	420
StyI	CCWWGG	1 cut(s)	484
TaaI	ACNGT	1 cut(s)	46
TaiI	ACGT	2 cut(s)	195, 331
TasI	AATT	3 cut(s)	116, 166, 361
Tru1I	TTAA	2 cut(s)	111, 375
Tru9I	TTAA	2 cut(s)	111, 375
TscAI	CASTG	3 cut(s)	49, 360, 405
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	7 cut(s)	308, 323, 368, 383, 428, 458, 533
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	2 cut(s)	426, 492
TspRI	CASTG	3 cut(s)	49, 360, 405
VneI	GTGCAC	1 cut(s)	194
XceI	RCATGY	1 cut(s)	175
XspI	CTAG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.