Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001961

Physical Location & Seq

Genomic Coordinates Forward (+)

54889690 .. 54896272

Gene Structure 6583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00037670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGATGCCGACACTAAGTTACTTCTTTGCTGGAAAATTTGGGAAGTTGTGGAAGGGACAACCGCCGGAGGTCCAATCGGCGGCTGCGGTGGCGACAAGGTTATCCCGGATTCTTGCCGGATTTCTTATGCGTTTTGGCTTGGATCGGGATCGCGTCACTCTCGCTGGTCGGGCGGTGACGGGTCGTGTCGGCAGTCCGATGTCACCGATCGGGAGGTGGAGGTGGAGGCGCAGCGCGGCGGTGTCCGCGCTTGGGGGGGGGGGGAGGTTAGACGGCCCTCCCAATCGCAAACAAAATCCTGACCACCGTCATCGAAATCTTGTTAGAATCCACGCAGTCGCCCTCGGTTCCCGCACACACCAGAAACTTCCTCTTATTTTGCTCGATTCGATACAGTTCTTGGAAGCTGCACTCTGCGTTCTAGGTCTTGTTCAAATTCTGTTTTTGGGTGCTATGGCGCTTGAGTCTTCAATTCTAAGCCTGCCCAGATTCATCTCTGGTTCGAAATCATTGAGTTTCTTGTATTACCGTAAGCAGAAGAATTTCCCCACAGGTAAAGATAGTGAGAGTTCTAGTGGTACAAATGCTGTTTCGGGTTCGAGTTTTGATTTTGTTAGGGTAATGGTGAAGTGTGGAGTTGTTTTAGCAGCTATGGTTTGTGGGGTTTTGGTGTATGGGTCTAGGAGAGCTTTTGCTGTGGAGGGTATGGTCAGTGCAAGCTATGGGGTTGTTGACAAGTGCATATTGATGTTCAGAAATGCTTGGCCGAAGACGCTGCTGGTTCTTCAGGTTTTTAAAGAGCAGGGTTTGATTTTGGCGGCGCTTTTGGGTCTCTCGGCTTTTTTCTCAATGGCAGAGACTTTGATTACCACACTATGGCCTTGGAGGGTGCGTGAGTTGCCTGAGAAAGAGCCTGAAAATGGTGTCTTCAGATTGCTTCGCAATGATGTGACTCAGTTCTTAACAACCATACTTATTGGCACAACTGTTGTCAATATTGGAGCAACTGCTTTAGTTACAAAGGCTGCAACAGCGATATTTGGTGAAGCTGGTGTTAGTGCAGCAACTGGAGTAATGACTGTTCTTATTTTGCTCCTCACCAAAATAACTCCCAAAAGTGTTGCTGTTCACAATCCCACAGAAGTTGCTGGGTTTGTGACATTGCCCTCGAATTCAATTGGGGCTAGTTGTGGTCAAGCTAGTATTGGCACAACTTCTGCATTGTTTCAATTGGGAACTTCCAGATGGTTTGTTACCGAGTTGGACTTGACGGAGGAGTTTGGTCAAATTGTTCCACGAGCCAAGCATCTGCTGGCTGTTCCTTCTTATCGCCTACACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS CorC_HlyC DUF21

Protein Analysis

447

Amino Acids

48.32

Weight (kDa)

10.3

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CNNM	PF01595	270 - 389	2.5e-26	Cyclin M transmembrane N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00925
fragaria_vesca	FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130
rosa_chinensis	RchiOBHm_Chr5g0042791 RchiOBHm_Chr5g0042841 RchiOBHm_Chr5g0043091 RchiOBHm_Chr5g0043121 RchiOBHm_Chr5g0043141
rosa_laevigata	RLG00000034152 RLG00000034154 RLG00000034159 RLG00000034161 RLG00000034162 RLG00000034165
rosa_multiflora	Rmu_sc0000493.1_g000029 Rmu_sc0002079.1_g000002 Rmu_sc0004950.1_g000009 Rmu_sc0008148.1_g000050 Rmu_sc0027101.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037670 Rroxscaffold_1G00037710 Rroxscaffold_1G00037760 Rroxscaffold_1G00037830 Rroxscaffold_7G00212010
rosa_rugosa	Rorug03G0298700 Rorug05G0204300 Rorug05G0204500 Rorug05G0276100 Rorug05G0308400
rosa_samantha	Rh5AG289500 Rh5BG293600 Rh5BG293900 Rh5BG295600 Rh5BG295800 Rh5BG296100 Rh5CG290900 Rh5CG326200 Rh5DG303600 Rh5DG305300 Rh6AG419200 Rh6BG071100
rosa_wichuraiana	Rw5G026820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	876
AccII	CGCG	3 cut(s)	153, 236, 248
AciI	CCGC	9 cut(s)	62, 80, 86, 173, 236, 239, 246, 352, 818
AclWI	GGATC	2 cut(s)	150, 156
AcoI	YGGCCR	1 cut(s)	764
AcsI	RAATTY	4 cut(s)	35, 435, 541, 1171
AcuI	CTGAAG	2 cut(s)	770, 913
AfaI	GTAC	1 cut(s)	580
AfiI	CCNNNNNNNGG	4 cut(s)	79, 252, 876, 920
AgsI	TTSAA	4 cut(s)	434, 471, 1176, 1229
AluBI	AGCT	6 cut(s)	407, 650, 689, 720, 1049, 1199
AluI	AGCT	6 cut(s)	407, 650, 689, 720, 1049, 1199
Alw26I	GTCTC	2 cut(s)	836, 851
AlwI	GGATC	2 cut(s)	150, 156
AlwNI	CAGNNNCTG	1 cut(s)	1067
AoxI	GGCC	3 cut(s)	274, 764, 878
ApeKI	GCWGC	7 cut(s)	83, 231, 407, 647, 775, 1025, 1061
ApoI	RAATTY	4 cut(s)	35, 435, 541, 1171
Asp700I	GAANNNNTTC	1 cut(s)	542
AspLEI	GCGC	5 cut(s)	231, 236, 250, 460, 823
AspS9I	GGNCC	2 cut(s)	70, 275
AsuC2I	CCSGG	1 cut(s)	106
AsuHPI	GGTGA	5 cut(s)	187, 195, 637, 1055, 1090
AsuII	TTCGAA	1 cut(s)	503
AvaII	GGWCC	1 cut(s)	70
BauI	CACGAG	1 cut(s)	1296
BbsI	GAAGAC	3 cut(s)	459, 776, 919
BbvI	GCAGC	7 cut(s)	70, 243, 394, 659, 762, 1012, 1073
BccI	CCATC	1 cut(s)	1239
BceAI	ACGGC	1 cut(s)	289
BcgI	CGANNNNNNTGC	2 cut(s)	757, 791
BcnI	CCSGG	1 cut(s)	106
BcoDI	GTCTC	2 cut(s)	836, 851
BfaI	CTAG	5 cut(s)	422, 573, 681, 1185, 1200
BfoI	RGCGCY	2 cut(s)	461, 824
Bme1390I	CCNGG	1 cut(s)	106
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	2 cut(s)	70, 275
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	1 cut(s)	106
BmsI	GCATC	1 cut(s)	1315
BoxI	GACNNNNGTC	1 cut(s)	306
BpiI	GAAGAC	3 cut(s)	459, 776, 919
BpmI	CTGGAG	1 cut(s)	1089
Bpu14I	TTCGAA	1 cut(s)	503
BpuEI	CTTGAG	1 cut(s)	482
BpuMI	CCSGG	1 cut(s)	106
BsaBI	GATNNNNATC	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	836
BsaJI	CCNNGG	2 cut(s)	343, 881
BsaXI	ACNNNNNCTCC	2 cut(s)	877, 907
Bsc4I	CCNNNNNNNGG	4 cut(s)	79, 252, 876, 920
Bse1I	ACTGG	1 cut(s)	1072
Bse3DI	GCAATG	2 cut(s)	949, 1160
Bse8I	GATNNNNATC	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	343, 881
BseJI	GATNNNNATC	1 cut(s)	147
BseLI	CCNNNNNNNGG	4 cut(s)	79, 252, 876, 920
BseMI	GCAATG	2 cut(s)	949, 1160
BseMII	CTCAG	2 cut(s)	894, 968
BseNI	ACTGG	1 cut(s)	1072
BseRI	GAGGAG	2 cut(s)	1085, 1289
BseXI	GCAGC	7 cut(s)	70, 243, 394, 659, 762, 1012, 1073
BseYI	CCCAGC	1 cut(s)	1148
BsgI	GTGCAG	2 cut(s)	393, 1080
Bsh1236I	CGCG	3 cut(s)	153, 236, 248
Bsh1285I	CGRYCG	1 cut(s)	210
BshFI	GGCC	3 cut(s)	276, 766, 880
BsiEI	CGRYCG	1 cut(s)	210
BsiSI	CCGG	3 cut(s)	65, 106, 117
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	4 cut(s)	79, 252, 876, 920
BsmAI	GTCTC	2 cut(s)	836, 851
BsmFI	GGGAC	1 cut(s)	69
BsnI	GGCC	3 cut(s)	276, 766, 880
Bso31I	GGTCTC	1 cut(s)	836
Bsp119I	TTCGAA	1 cut(s)	503
Bsp143I	GATC	3 cut(s)	142, 148, 207
BspACI	CCGC	9 cut(s)	62, 80, 86, 173, 236, 239, 246, 352, 818
BspANI	GGCC	3 cut(s)	276, 766, 880
BspCNI	CTCAG	2 cut(s)	895, 967
BspFNI	CGCG	3 cut(s)	153, 236, 248
BspLI	GGNNCC	1 cut(s)	349
BspPI	GGATC	2 cut(s)	150, 156
BspT104I	TTCGAA	1 cut(s)	503
BspTNI	GGTCTC	1 cut(s)	836
BsrDI	GCAATG	2 cut(s)	949, 1160
BsrI	ACTGG	1 cut(s)	1072
BssECI	CCNNGG	2 cut(s)	343, 881
BssMI	GATC	3 cut(s)	142, 148, 207
BssSI	CACGAG	1 cut(s)	1296
BssT1I	CCWWGG	1 cut(s)	881
Bst2BI	CACGAG	1 cut(s)	1296
Bst4CI	ACNGT	5 cut(s)	308, 396, 530, 988, 1081
BstBI	TTCGAA	1 cut(s)	503
BstC8I	GCNNGC	3 cut(s)	482, 718, 1314
BstDEI	CTNAG	4 cut(s)	14, 476, 903, 954
BstFNI	CGCG	3 cut(s)	153, 236, 248
BstH2I	RGCGCY	2 cut(s)	461, 824
BstHHI	GCGC	5 cut(s)	231, 236, 250, 460, 823
BstKTI	GATC	3 cut(s)	145, 151, 210
BstMAI	GTCTC	2 cut(s)	836, 851
BstMBI	GATC	3 cut(s)	142, 148, 207
BstMCI	CGRYCG	1 cut(s)	210
BstMWI	GCNNNNNNNGC	6 cut(s)	89, 170, 245, 772, 898, 1031
BstPAI	GACNNNNGTC	1 cut(s)	306
BstSCI	CCNGG	1 cut(s)	104
BstUI	CGCG	3 cut(s)	153, 236, 248
BstV1I	GCAGC	7 cut(s)	70, 243, 394, 659, 762, 1012, 1073
BstV2I	GAAGAC	3 cut(s)	459, 776, 919
BsuRI	GGCC	3 cut(s)	276, 766, 880
BtsIMutI	CAGTG	1 cut(s)	718
Cac8I	GCNNGC	3 cut(s)	482, 718, 1314
CaiI	CAGNNNCTG	1 cut(s)	1067
CfoI	GCGC	5 cut(s)	231, 236, 250, 460, 823
Cfr13I	GGNCC	2 cut(s)	70, 275
CseI	GACGC	2 cut(s)	142, 781
Csp6I	GTAC	1 cut(s)	579
CspCI	CAANNNNNGTGG	2 cut(s)	1126, 1161
CviQI	GTAC	1 cut(s)	579
DdeI	CTNAG	4 cut(s)	14, 476, 903, 954
DpnI	GATC	3 cut(s)	144, 150, 209
DpnII	GATC	3 cut(s)	142, 148, 207
DraI	TTTAAA	1 cut(s)	796
EaeI	YGGCCR	1 cut(s)	764
Eco130I	CCWWGG	1 cut(s)	881
Eco31I	GGTCTC	1 cut(s)	836
Eco47I	GGWCC	1 cut(s)	70
Eco57I	CTGAAG	2 cut(s)	770, 913
EcoRI	GAATTC	1 cut(s)	1171
EcoT14I	CCWWGG	1 cut(s)	881
ErhI	CCWWGG	1 cut(s)	881
FaiI	YATR	9 cut(s)	128, 455, 653, 675, 707, 723, 743, 877, 971
FaqI	GGGAC	1 cut(s)	69
FauI	CCCGC	1 cut(s)	359
FspBI	CTAG	5 cut(s)	422, 573, 681, 1185, 1200
GlaI	GCGC	5 cut(s)	230, 235, 249, 459, 822
GsaI	CCCAGC	1 cut(s)	1152
GsuI	CTGGAG	1 cut(s)	1089
HaeII	RGCGCY	2 cut(s)	461, 824
HaeIII	GGCC	3 cut(s)	276, 766, 880
HapII	CCGG	3 cut(s)	65, 106, 117
HgaI	GACGC	2 cut(s)	142, 781
HhaI	GCGC	5 cut(s)	231, 236, 250, 460, 823
Hin6I	GCGC	5 cut(s)	229, 234, 248, 458, 821
HinP1I	GCGC	5 cut(s)	229, 234, 248, 458, 821
HincII	GTYRAC	1 cut(s)	733
HindII	GTYRAC	1 cut(s)	733
HinfI	GANTC	6 cut(s)	109, 327, 386, 464, 489, 952
HpaII	CCGG	3 cut(s)	65, 106, 117
HphI	GGTGA	5 cut(s)	187, 195, 637, 1055, 1090
Hpy166II	GTNNAC	2 cut(s)	733, 1129
Hpy188I	TCNGA	3 cut(s)	198, 755, 932
Hpy188III	TCNNGA	4 cut(s)	146, 211, 299, 1242
Hpy8I	GTNNAC	2 cut(s)	733, 1129
HpyAV	CCTTC	2 cut(s)	46, 1332
HpyCH4III	ACNGT	5 cut(s)	308, 396, 530, 988, 1081
HpyCH4V	TGCA	6 cut(s)	410, 716, 741, 1028, 1061, 1220
HpyF10VI	GCNNNNNNNGC	6 cut(s)	89, 170, 245, 772, 898, 1031
HpyF3I	CTNAG	4 cut(s)	14, 476, 903, 954
HspAI	GCGC	5 cut(s)	229, 234, 248, 458, 821
Kzo9I	GATC	3 cut(s)	142, 148, 207
LmnI	GCTCC	2 cut(s)	1001, 1098
Lsp1109I	GCAGC	7 cut(s)	70, 243, 394, 659, 762, 1012, 1073
LweI	GCATC	1 cut(s)	1315
MaeI	CTAG	5 cut(s)	422, 573, 681, 1185, 1200
MaeIII	GTNAC	8 cut(s)	17, 154, 175, 201, 949, 1015, 1156, 1252
MalI	GATC	3 cut(s)	144, 150, 209
MboI	GATC	3 cut(s)	142, 148, 207
MboII	GAAGA	5 cut(s)	459, 550, 776, 781, 919
MfeI	CAATTG	2 cut(s)	1176, 1229
MluCI	AATT	8 cut(s)	35, 435, 471, 541, 1171, 1176, 1229, 1287
MlyI	GAGTC	2 cut(s)	473, 946
MmeI	TCCRAC	1 cut(s)	1242
MroXI	GAANNNNTTC	1 cut(s)	542
MseI	TTAA	2 cut(s)	795, 962
MslI	CAYNNNNRTG	1 cut(s)	746
MspI	CCGG	3 cut(s)	65, 106, 117
MspR9I	CCNGG	1 cut(s)	106
MteI	GCGCNGCGC	1 cut(s)	232
MunI	CAATTG	2 cut(s)	1176, 1229
MvnI	CGCG	3 cut(s)	153, 236, 248
MwoI	GCNNNNNNNGC	6 cut(s)	89, 170, 245, 772, 898, 1031
NciI	CCSGG	1 cut(s)	106
NdeII	GATC	3 cut(s)	142, 148, 207
NlaIV	GGNNCC	1 cut(s)	349
NmeAIII	GCCGAG	1 cut(s)	815
NmuCI	GTSAC	5 cut(s)	154, 175, 201, 949, 1156
NspV	TTCGAA	1 cut(s)	503
PdmI	GAANNNNTTC	1 cut(s)	542
PfeI	GAWTC	4 cut(s)	109, 327, 386, 489
PflMI	CCANNNNNTGG	1 cut(s)	876
PfoI	TCCNGGA	1 cut(s)	104
Ple19I	CGATCG	1 cut(s)	210
PleI	GAGTC	2 cut(s)	472, 946
PpsI	GAGTC	2 cut(s)	472, 946
PshAI	GACNNNNGTC	1 cut(s)	306
PspFI	CCCAGC	1 cut(s)	1148
PspN4I	GGNNCC	1 cut(s)	349
PspPI	GGNCC	2 cut(s)	70, 275
PsrI	GAACNNNNNNTAC	2 cut(s)	1065, 1097
PstNI	CAGNNNCTG	1 cut(s)	1067
PvuI	CGATCG	1 cut(s)	210
RsaI	GTAC	1 cut(s)	580
RsaNI	GTAC	1 cut(s)	579
RseI	CAYNNNNRTG	1 cut(s)	746
SaqAI	TTAA	2 cut(s)	795, 962
Sau3AI	GATC	3 cut(s)	142, 148, 207
Sau96I	GGNCC	2 cut(s)	70, 275
SchI	GAGTC	2 cut(s)	473, 946
ScrFI	CCNGG	1 cut(s)	106
SfaNI	GCATC	1 cut(s)	1315
SfuI	TTCGAA	1 cut(s)	503
SinI	GGWCC	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	746
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
Sse9I	AATT	8 cut(s)	35, 435, 471, 541, 1171, 1176, 1229, 1287
SsiI	CCGC	9 cut(s)	62, 80, 86, 173, 236, 239, 246, 352, 818
SspI	AATATT	1 cut(s)	997
SspMI	CTAG	5 cut(s)	422, 573, 681, 1185, 1200
StyD4I	CCNGG	1 cut(s)	104
StyI	CCWWGG	1 cut(s)	881
TaaI	ACNGT	5 cut(s)	308, 396, 530, 988, 1081
TaqI	TCGA	6 cut(s)	313, 384, 389, 503, 599, 1169
TasI	AATT	8 cut(s)	35, 435, 471, 541, 1171, 1176, 1229, 1287
TauI	GCSGC	3 cut(s)	83, 239, 821
TfiI	GAWTC	4 cut(s)	109, 327, 386, 489
Tru1I	TTAA	2 cut(s)	795, 962
Tru9I	TTAA	2 cut(s)	795, 962
TscAI	CASTG	1 cut(s)	718
TseFI	GTSAC	5 cut(s)	154, 175, 201, 949, 1156
TseI	GCWGC	7 cut(s)	83, 231, 407, 647, 775, 1025, 1061
Tsp45I	GTSAC	5 cut(s)	154, 175, 201, 949, 1156
TspDTI	ATGAA	1 cut(s)	481
TspGWI	ACGGA	1 cut(s)	1286
TspRI	CASTG	1 cut(s)	718
Van91I	CCANNNNNTGG	1 cut(s)	876
VpaK11BI	GGWCC	1 cut(s)	70
XapI	RAATTY	4 cut(s)	35, 435, 541, 1171
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1309
XmnI	GAANNNNTTC	1 cut(s)	542
XspI	CTAG	5 cut(s)	422, 573, 681, 1185, 1200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.