Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001961

Physical Location & Seq

Genomic Coordinates Reverse (-)

37753392 .. 37771223

Gene Structure 17832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG295800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGTGAAGTGTGGAGTTGTTTTAGCAGCTATGGTTTGTGGGGTTTGTGGAGAGCTTTTGCTGTGGAGGGTGTGGTCAATGCAAGCTATGGCCTATAGGGTTGTTGACAAGTGCACATTGATGTTTAGAAATGCTTGGTCGAAGACGCTGCTGGTTCTGCAGGTTTTTATGGAGCAGGGTTTGATTTTGGTGGCGCTTTTGGGTCTCTCGGCTTTTTTCTCAATGGCAGAGACTTCGATTACCACGCTATGGCCTTGGAAGGTGCGTGAGTTGGCTGAGAAAGAGCCTGAAAATGGTGTCTTCGGATTGCTTCGCAATGATGTGACTCGGTTCTTGACAACCATACTTATTGGCACAACTGTTGTCAATATTGGAGCAACTGCTCTAGTTACAGAGGCTGCAACAATGATATTTGGTGTAGTTGGTGCTAGTGCAGCAACTGGAGTAATGATTGTTCTTATTTTGATCCTCGCCGAAATAACTCCCAAAAGTGTTGCTATTCACAATCCCACAGAAGTTGCTAGGTATGTGGCATTGGACTGGTTGAGACATGTGGATGAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS CorC_HlyC DUF21

Protein Analysis

188

Amino Acids

20.62

Weight (kDa)

6.11

Isoelectric Point (pI)

26.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CNNM	PF01595	61 - 178	8.7e-29	Cyclin M transmembrane N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00925
fragaria_vesca	FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130
rosa_chinensis	RchiOBHm_Chr5g0042791 RchiOBHm_Chr5g0042841 RchiOBHm_Chr5g0043091 RchiOBHm_Chr5g0043121 RchiOBHm_Chr5g0043141
rosa_laevigata	RLG00000034152 RLG00000034154 RLG00000034159 RLG00000034161 RLG00000034162 RLG00000034165
rosa_multiflora	Rmu_sc0000493.1_g000029 Rmu_sc0002079.1_g000002 Rmu_sc0004950.1_g000009 Rmu_sc0008148.1_g000050 Rmu_sc0027101.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037670 Rroxscaffold_1G00037710 Rroxscaffold_1G00037760 Rroxscaffold_1G00037830 Rroxscaffold_7G00212010
rosa_rugosa	Rorug03G0298700 Rorug05G0204300 Rorug05G0204500 Rorug05G0276100 Rorug05G0308400
rosa_samantha	Rh5AG289500 Rh5BG293600 Rh5BG293900 Rh5BG295600 Rh5BG295800 Rh5BG296100 Rh5CG290900 Rh5CG326200 Rh5DG303600 Rh5DG305300 Rh6AG419200 Rh6BG071100
rosa_wichuraiana	Rw5G026820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	151
AccB7I	CCANNNNNTGG	1 cut(s)	249
AclWI	GGATC	1 cut(s)	460
AfiI	CCNNNNNNNGG	2 cut(s)	249, 293
AflIII	ACRYGT	1 cut(s)	550
AluBI	AGCT	3 cut(s)	29, 55, 86
AluI	AGCT	3 cut(s)	29, 55, 86
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	3 cut(s)	209, 224, 541
Alw44I	GTGCAC	1 cut(s)	112
AlwI	GGATC	1 cut(s)	460
AlwNI	CAGNNNCTG	2 cut(s)	398, 440
AoxI	GGCC	2 cut(s)	90, 251
ApaLI	GTGCAC	1 cut(s)	112
ApeKI	GCWGC	4 cut(s)	26, 148, 398, 434
AspLEI	GCGC	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	16
BaeGI	GKGCMC	1 cut(s)	116
BbsI	GAAGAC	2 cut(s)	149, 292
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	4 cut(s)	38, 135, 385, 446
BcgI	CGANNNNNNTGC	4 cut(s)	130, 164, 216, 250
BcoDI	GTCTC	3 cut(s)	209, 224, 541
BfaI	CTAG	3 cut(s)	386, 429, 522
BfmI	CTRYAG	2 cut(s)	94, 158
BfoI	RGCGCY	1 cut(s)	197
BfuAI	ACCTGC	1 cut(s)	151
BisI	GCNGC	4 cut(s)	27, 149, 399, 435
BlsI	GCNGC	4 cut(s)	28, 150, 400, 436
BpiI	GAAGAC	2 cut(s)	149, 292
BpmI	CTGGAG	1 cut(s)	462
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	2 cut(s)	249, 293
Bse1I	ACTGG	2 cut(s)	445, 545
Bse3DI	GCAATG	1 cut(s)	322
BseDI	CCNNGG	1 cut(s)	254
BseGI	GGATG	1 cut(s)	562
BseLI	CCNNNNNNNGG	2 cut(s)	249, 293
BseMI	GCAATG	1 cut(s)	322
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	2 cut(s)	445, 545
BseSI	GKGCMC	1 cut(s)	116
BseXI	GCAGC	4 cut(s)	38, 135, 385, 446
BsgI	GTGCAG	1 cut(s)	453
BshFI	GGCC	2 cut(s)	92, 253
BsiHKAI	GWGCWC	1 cut(s)	116
BslI	CCNNNNNNNGG	2 cut(s)	249, 293
BsmAI	GTCTC	3 cut(s)	209, 224, 541
BsnI	GGCC	2 cut(s)	92, 253
Bso31I	GGTCTC	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	1 cut(s)	465
BspANI	GGCC	2 cut(s)	92, 253
BspCNI	CTCAG	1 cut(s)	268
BspMAI	CTGCAG	1 cut(s)	162
BspMI	ACCTGC	1 cut(s)	151
BspPI	GGATC	1 cut(s)	460
BspTNI	GGTCTC	1 cut(s)	209
BsrDI	GCAATG	1 cut(s)	322
BsrI	ACTGG	2 cut(s)	445, 545
BssECI	CCNNGG	1 cut(s)	254
BssMI	GATC	1 cut(s)	465
BssT1I	CCWWGG	1 cut(s)	254
Bst4CI	ACNGT	1 cut(s)	361
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	1 cut(s)	276
BstF5I	GGATG	1 cut(s)	562
BstH2I	RGCGCY	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	196
BstKTI	GATC	1 cut(s)	468
BstMAI	GTCTC	3 cut(s)	209, 224, 541
BstMBI	GATC	1 cut(s)	465
BstMWI	GCNNNNNNNGC	2 cut(s)	157, 434
BstNSI	RCATGY	1 cut(s)	554
BstSFI	CTRYAG	2 cut(s)	94, 158
BstSLI	GKGCMC	1 cut(s)	116
BstV1I	GCAGC	4 cut(s)	38, 135, 385, 446
BstV2I	GAAGAC	2 cut(s)	149, 292
BsuRI	GGCC	2 cut(s)	92, 253
BtsCI	GGATG	1 cut(s)	562
BveI	ACCTGC	1 cut(s)	151
Cac8I	GCNNGC	1 cut(s)	84
CaiI	CAGNNNCTG	2 cut(s)	398, 440
CfoI	GCGC	1 cut(s)	196
CseI	GACGC	1 cut(s)	154
CspCI	CAANNNNNGTGG	2 cut(s)	499, 534
CviAII	CATG	1 cut(s)	551
CviJI	RGCY	9 cut(s)	29, 55, 86, 92, 212, 253, 275, 286, 398
CviKI_1	RGCY	9 cut(s)	29, 55, 86, 92, 212, 253, 275, 286, 398
DdeI	CTNAG	1 cut(s)	276
DpnI	GATC	1 cut(s)	467
DpnII	GATC	1 cut(s)	465
Eco130I	CCWWGG	1 cut(s)	254
Eco31I	GGTCTC	1 cut(s)	209
EcoT14I	CCWWGG	1 cut(s)	254
ErhI	CCWWGG	1 cut(s)	254
FaeI	CATG	1 cut(s)	554
FaiI	YATR	8 cut(s)	32, 89, 96, 170, 250, 344, 528, 552
FatI	CATG	1 cut(s)	550
Fnu4HI	GCNGC	4 cut(s)	27, 149, 399, 435
Fsp4HI	GCNGC	4 cut(s)	27, 149, 399, 435
FspBI	CTAG	3 cut(s)	386, 429, 522
GlaI	GCGC	1 cut(s)	195
GluI	GCNGC	4 cut(s)	27, 149, 399, 435
GsuI	CTGGAG	1 cut(s)	462
HaeII	RGCGCY	1 cut(s)	197
HaeIII	GGCC	2 cut(s)	92, 253
HgaI	GACGC	1 cut(s)	154
HhaI	GCGC	1 cut(s)	196
Hin1II	CATG	1 cut(s)	554
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	1 cut(s)	325
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	106, 114
Hpy188I	TCNGA	1 cut(s)	305
Hpy188III	TCNNGA	1 cut(s)	334
Hpy8I	GTNNAC	2 cut(s)	106, 114
HpyAV	CCTTC	1 cut(s)	253
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4V	TGCA	5 cut(s)	82, 114, 160, 401, 434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	157, 434
HpyF3I	CTNAG	1 cut(s)	276
Hsp92II	CATG	1 cut(s)	554
HspAI	GCGC	1 cut(s)	194
Kzo9I	GATC	1 cut(s)	465
LmnI	GCTCC	2 cut(s)	172, 374
LpnPI	CCDG	6 cut(s)	137, 146, 161, 300, 426, 526
Lsp1109I	GCAGC	4 cut(s)	38, 135, 385, 446
MaeI	CTAG	3 cut(s)	386, 429, 522
MaeIII	GTNAC	2 cut(s)	322, 388
MalI	GATC	1 cut(s)	467
MboI	GATC	1 cut(s)	465
MboII	GAAGA	2 cut(s)	154, 292
MhlI	GDGCHC	1 cut(s)	116
MlyI	GAGTC	1 cut(s)	319
MnlI	CCTC	3 cut(s)	60, 388, 479
MslI	CAYNNNNRTG	2 cut(s)	119, 555
MwoI	GCNNNNNNNGC	2 cut(s)	157, 434
NdeII	GATC	1 cut(s)	465
NlaIII	CATG	1 cut(s)	554
NmeAIII	GCCGAG	1 cut(s)	188
NmuCI	GTSAC	1 cut(s)	322
NspI	RCATGY	1 cut(s)	554
PciI	ACATGT	1 cut(s)	550
PflMI	CCANNNNNTGG	1 cut(s)	249
PkrI	GCNGC	4 cut(s)	28, 150, 400, 436
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
PscI	ACATGT	1 cut(s)	550
PsrI	GAACNNNNNNTAC	2 cut(s)	438, 470
PstI	CTGCAG	1 cut(s)	162
PstNI	CAGNNNCTG	2 cut(s)	398, 440
RseI	CAYNNNNRTG	2 cut(s)	119, 555
SatI	GCNGC	4 cut(s)	27, 149, 399, 435
Sau3AI	GATC	1 cut(s)	465
SchI	GAGTC	1 cut(s)	319
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	6 cut(s)	31, 57, 88, 165, 264, 527
SfcI	CTRYAG	2 cut(s)	94, 158
SmiMI	CAYNNNNRTG	2 cut(s)	119, 555
SspI	AATATT	1 cut(s)	370
SspMI	CTAG	3 cut(s)	386, 429, 522
StyI	CCWWGG	1 cut(s)	254
TaaI	ACNGT	1 cut(s)	361
TaqI	TCGA	2 cut(s)	140, 236
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	4 cut(s)	26, 148, 398, 434
Tsp45I	GTSAC	1 cut(s)	322
Van91I	CCANNNNNTGG	1 cut(s)	249
VneI	GTGCAC	1 cut(s)	112
XceI	RCATGY	1 cut(s)	554
XspI	CTAG	3 cut(s)	386, 429, 522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.