Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001961

Physical Location & Seq

Genomic Coordinates Reverse (-)

37819611 .. 37820263

Gene Structure 653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG296100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGTTTGTGGGGTTTTGGTGTATGGGTCTAGGAGAGCTTTTGCTGTGGAGGGTGTGGTCAATGCAAGCTATGGGGTTGTTGGCAAGTGCATATTAATGTTCAGAAATGCTTGGCCGAAGACGCTGCTGGTTCTTCAGGTTCTTAAAGAGCAGGGTTTGATTTTGGCGGCTCTTTTGGGTTTCTCCGCTTTTTTTCTCAATGGCAGAGACTTCGATTACCGCGCAATGGCCTTGGAAGGTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBS CorC_HlyC DUF21

Protein Analysis

81

Amino Acids

8.82

Weight (kDa)

9.18

Isoelectric Point (pI)

22.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001961)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00925
fragaria_vesca	FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130 FvH4_3g24130
rosa_chinensis	RchiOBHm_Chr5g0042791 RchiOBHm_Chr5g0042841 RchiOBHm_Chr5g0043091 RchiOBHm_Chr5g0043121 RchiOBHm_Chr5g0043141
rosa_laevigata	RLG00000034152 RLG00000034154 RLG00000034159 RLG00000034161 RLG00000034162 RLG00000034165
rosa_multiflora	Rmu_sc0000493.1_g000029 Rmu_sc0002079.1_g000002 Rmu_sc0004950.1_g000009 Rmu_sc0008148.1_g000050 Rmu_sc0027101.1_g000001
rosa_roxburghii	Rroxscaffold_1G00037670 Rroxscaffold_1G00037710 Rroxscaffold_1G00037760 Rroxscaffold_1G00037830 Rroxscaffold_7G00212010
rosa_rugosa	Rorug03G0298700 Rorug05G0204300 Rorug05G0204500 Rorug05G0276100 Rorug05G0308400
rosa_samantha	Rh5AG289500 Rh5BG293600 Rh5BG293900 Rh5BG295600 Rh5BG295800 Rh5BG296100 Rh5CG290900 Rh5CG326200 Rh5DG303600 Rh5DG305300 Rh6AG419200 Rh6BG071100
rosa_wichuraiana	Rw5G026820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	222
AciI	CCGC	3 cut(s)	167, 186, 220
AcoI	YGGCCR	1 cut(s)	113
AcuI	CTGAAG	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	226
AluBI	AGCT	2 cut(s)	38, 69
AluI	AGCT	2 cut(s)	38, 69
Alw26I	GTCTC	1 cut(s)	201
AoxI	GGCC	2 cut(s)	113, 228
ApeKI	GCWGC	1 cut(s)	124
AseI	ATTAAT	1 cut(s)	95
AspLEI	GCGC	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	111
BcgI	CGANNNNNNTGC	4 cut(s)	106, 140, 193, 227
BcoDI	GTCTC	1 cut(s)	201
BfaI	CTAG	1 cut(s)	30
BisI	GCNGC	2 cut(s)	125, 168
BlsI	GCNGC	2 cut(s)	126, 169
BpiI	GAAGAC	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse3DI	GCAATG	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	231
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMI	GCAATG	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	2 cut(s)	115, 230
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	1 cut(s)	201
BsnI	GGCC	2 cut(s)	115, 230
BspACI	CCGC	3 cut(s)	167, 186, 220
BspANI	GGCC	2 cut(s)	115, 230
BspFNI	CGCG	1 cut(s)	222
BsrDI	GCAATG	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	231
BstC8I	GCNNGC	1 cut(s)	67
BstFNI	CGCG	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	224
BstMAI	GTCTC	1 cut(s)	201
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	1 cut(s)	111
BstV2I	GAAGAC	1 cut(s)	125
BsuRI	GGCC	2 cut(s)	115, 230
Cac8I	GCNNGC	1 cut(s)	67
CfoI	GCGC	1 cut(s)	224
CseI	GACGC	1 cut(s)	130
CviJI	RGCY	5 cut(s)	38, 69, 115, 170, 230
CviKI_1	RGCY	5 cut(s)	38, 69, 115, 170, 230
EaeI	YGGCCR	1 cut(s)	113
Eco130I	CCWWGG	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
FaiI	YATR	3 cut(s)	24, 72, 92
Fnu4HI	GCNGC	2 cut(s)	125, 168
Fsp4HI	GCNGC	2 cut(s)	125, 168
FspBI	CTAG	1 cut(s)	30
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	2 cut(s)	125, 168
HaeIII	GGCC	2 cut(s)	115, 230
HgaI	GACGC	1 cut(s)	130
HhaI	GCGC	1 cut(s)	224
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
Hpy188I	TCNGA	1 cut(s)	104
HpyAV	CCTTC	1 cut(s)	230
HpyCH4V	TGCA	2 cut(s)	65, 90
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HspAI	GCGC	1 cut(s)	222
LpnPI	CCDG	3 cut(s)	113, 122, 137
Lsp1109I	GCAGC	1 cut(s)	111
MaeI	CTAG	1 cut(s)	30
MboII	GAAGA	2 cut(s)	125, 130
MnlI	CCTC	1 cut(s)	43
MseI	TTAA	2 cut(s)	95, 144
MslI	CAYNNNNRTG	1 cut(s)	95
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	1 cut(s)	121
PkrI	GCNGC	2 cut(s)	126, 169
PshBI	ATTAAT	1 cut(s)	95
RseI	CAYNNNNRTG	1 cut(s)	95
SaqAI	TTAA	2 cut(s)	95, 144
SatI	GCNGC	2 cut(s)	125, 168
SetI	ASST	4 cut(s)	40, 71, 141, 241
SgeI	CNNG	8 cut(s)	42, 78, 97, 123, 140, 149, 164, 233
SmiMI	CAYNNNNRTG	1 cut(s)	95
SsiI	CCGC	3 cut(s)	167, 186, 220
SspMI	CTAG	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	231
TaqI	TCGA	1 cut(s)	213
TauI	GCSGC	1 cut(s)	170
Tru1I	TTAA	2 cut(s)	95, 144
Tru9I	TTAA	2 cut(s)	95, 144
TseI	GCWGC	1 cut(s)	124
VspI	ATTAAT	1 cut(s)	95
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.