Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0020683

Physical Location & Seq

Genomic Coordinates Forward (+)

67872844 .. 67873230

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030807

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGAAACAGCTACACAAGCAATTGCGCATGAATCACAAGAGGGACGAAGAGATCCCCACCTCCTTATCCTCCTCCTACTCCACCAAAGCCTTTAAGCAACCAAAATATCTCCCCAGATCCATCAACTACATATTCGAAGAGCAACACCTCCTCTTCATCCTCGTTGGCATTCTCGTCGGCTCCACCTTCTTCATCCTCCAGCCCGTTCTCTCCTGCCTCTCCCTTTCGAGCCCAATCCCTGCATCCCTAGATCCTTCTCCTCCGTTCACTATCGAATCAATACCGCCTCCTTCTCCACCAACCTCCCCCACAACGCCGACATGGTCCCTTCTAGCCTCAGCAAACACAGGCTCAGGATTGTCGTCACCGGTGGCCCATGAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005975 GO:0005996 GO:0008150 GO:0008152 GO:0016829 GO:0016830 GO:0016831 GO:0019321 GO:0036094 GO:0042732 GO:0043167 GO:0043168 GO:0044238 GO:0044281 GO:0048037 GO:0048040 GO:0050662 GO:0051287 GO:0070403 GO:0071704 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

129

Amino Acids

13.97

Weight (kDa)

7.93

Isoelectric Point (pI)

86.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020683)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000024107 RLG00000030807
rosa_multiflora	Rmu_sc0000031.1_g000037
rosa_roxburghii	Rroxscaffold_2G00088930
rosa_rugosa	Rorug05G0276100
rosa_samantha	Rh5CG384200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	26
AciI	CCGC	1 cut(s)	284
AclWI	GGATC	3 cut(s)	46, 111, 245
AgeI	ACCGGT	1 cut(s)	367
AluBI	AGCT	1 cut(s)	10
AluI	AGCT	1 cut(s)	10
AlwI	GGATC	3 cut(s)	46, 111, 245
AoxI	GGCC	1 cut(s)	372
AsiGI	ACCGGT	1 cut(s)	367
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	2 cut(s)	324, 373
AsuHPI	GGTGA	1 cut(s)	357
AsuII	TTCGAA	1 cut(s)	135
AvaII	GGWCC	1 cut(s)	324
BanII	GRGCYC	1 cut(s)	233
BbvCI	CCTCAGC	1 cut(s)	337
BccI	CCATC	1 cut(s)	128
BcgI	CGANNNNNNTGC	2 cut(s)	157, 191
BfaI	CTAG	2 cut(s)	248, 332
Bme18I	GGWCC	1 cut(s)	324
BmgT120I	GGNCC	2 cut(s)	324, 373
BmiI	GGNNCC	2 cut(s)	181, 326
BmsI	GCATC	1 cut(s)	251
BpmI	CTGGAG	1 cut(s)	182
Bpu10I	CCTNAGC	2 cut(s)	337, 352
Bpu14I	TTCGAA	1 cut(s)	135
BsaWI	WCCGGW	1 cut(s)	367
Bse118I	RCCGGY	1 cut(s)	367
BseGI	GGATG	3 cut(s)	156, 192, 242
BseMII	CTCAG	2 cut(s)	351, 366
BseRI	GAGGAG	3 cut(s)	61, 140, 249
BshFI	GGCC	1 cut(s)	374
BshTI	ACCGGT	1 cut(s)	367
BsiSI	CCGG	1 cut(s)	368
BslFI	GGGAC	2 cut(s)	56, 310
BsmFI	GGGAC	2 cut(s)	56, 310
BsmI	GAATGC	1 cut(s)	168
BsnI	GGCC	1 cut(s)	374
Bsp119I	TTCGAA	1 cut(s)	135
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp143I	GATC	3 cut(s)	51, 116, 250
BspACI	CCGC	1 cut(s)	284
BspANI	GGCC	1 cut(s)	374
BspCNI	CTCAG	2 cut(s)	350, 365
BspLI	GGNNCC	2 cut(s)	181, 326
BspPI	GGATC	3 cut(s)	46, 111, 245
BspQI	GCTCTTC	1 cut(s)	132
BspT104I	TTCGAA	1 cut(s)	135
BsrFI	RCCGGY	1 cut(s)	367
BssAI	RCCGGY	1 cut(s)	367
BssMI	GATC	3 cut(s)	51, 116, 250
Bst6I	CTCTTC	3 cut(s)	42, 132, 158
BstBI	TTCGAA	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	337, 352
BstF5I	GGATG	3 cut(s)	156, 192, 242
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	3 cut(s)	54, 119, 253
BstMBI	GATC	3 cut(s)	51, 116, 250
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstX2I	RGATCY	3 cut(s)	51, 116, 250
BstYI	RGATCY	3 cut(s)	51, 116, 250
BsuRI	GGCC	1 cut(s)	374
BtsCI	GGATG	3 cut(s)	156, 192, 242
CfoI	GCGC	1 cut(s)	27
Cfr10I	RCCGGY	1 cut(s)	367
Cfr13I	GGNCC	2 cut(s)	324, 373
CspAI	ACCGGT	1 cut(s)	367
CviAII	CATG	3 cut(s)	28, 321, 377
CviJI	RGCY	9 cut(s)	10, 89, 180, 202, 231, 335, 351, 374, 384
CviKI_1	RGCY	9 cut(s)	10, 89, 180, 202, 231, 335, 351, 374, 384
DdeI	CTNAG	2 cut(s)	337, 352
DpnI	GATC	3 cut(s)	53, 118, 252
DpnII	GATC	3 cut(s)	51, 116, 250
Eam1104I	CTCTTC	3 cut(s)	42, 132, 158
EarI	CTCTTC	3 cut(s)	42, 132, 158
Eco24I	GRGCYC	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	324
EcoT38I	GRGCYC	1 cut(s)	233
FaeI	CATG	3 cut(s)	31, 324, 380
FaiI	YATR	4 cut(s)	29, 131, 322, 378
FaqI	GGGAC	2 cut(s)	56, 310
FatI	CATG	3 cut(s)	27, 320, 376
FokI	GGATG	3 cut(s)	143, 179, 229
FriOI	GRGCYC	1 cut(s)	233
FspBI	CTAG	2 cut(s)	248, 332
FspI	TGCGCA	1 cut(s)	26
GlaI	GCGC	1 cut(s)	26
GsuI	CTGGAG	1 cut(s)	182
HaeIII	GGCC	1 cut(s)	374
HapII	CCGG	1 cut(s)	368
HhaI	GCGC	1 cut(s)	27
Hin1II	CATG	3 cut(s)	31, 324, 380
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HinfI	GANTC	2 cut(s)	31, 275
HpaII	CCGG	1 cut(s)	368
HphI	GGTGA	1 cut(s)	357
Hpy166II	GTNNAC	1 cut(s)	267
Hpy188III	TCNNGA	1 cut(s)	354
Hpy8I	GTNNAC	1 cut(s)	267
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	5 cut(s)	196, 264, 300, 338, 374
HpyCH4V	TGCA	1 cut(s)	242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	2 cut(s)	337, 352
Hsp92II	CATG	3 cut(s)	31, 324, 380
HspAI	GCGC	1 cut(s)	25
Kzo9I	GATC	3 cut(s)	51, 116, 250
LguI	GCTCTTC	1 cut(s)	132
LmnI	GCTCC	1 cut(s)	185
LpnPI	CCDG	7 cut(s)	127, 212, 226, 252, 333, 339, 381
LweI	GCATC	1 cut(s)	251
MaeI	CTAG	2 cut(s)	248, 332
MaeIII	GTNAC	1 cut(s)	363
MalI	GATC	3 cut(s)	53, 118, 252
MboI	GATC	3 cut(s)	51, 116, 250
MboII	GAAGA	4 cut(s)	59, 145, 149, 181
MfeI	CAATTG	1 cut(s)	20
MflI	RGATCY	3 cut(s)	51, 116, 250
MhlI	GDGCHC	1 cut(s)	233
MluCI	AATT	1 cut(s)	20
MseI	TTAA	1 cut(s)	93
MspI	CCGG	1 cut(s)	368
MunI	CAATTG	1 cut(s)	20
Mva1269I	GAATGC	1 cut(s)	168
MwoI	GCNNNNNNNGC	1 cut(s)	16
NdeII	GATC	3 cut(s)	51, 116, 250
NlaIII	CATG	3 cut(s)	31, 324, 380
NlaIV	GGNNCC	2 cut(s)	181, 326
NmuCI	GTSAC	1 cut(s)	363
NsbI	TGCGCA	1 cut(s)	26
NspV	TTCGAA	1 cut(s)	135
PciSI	GCTCTTC	1 cut(s)	132
PctI	GAATGC	1 cut(s)	168
PfeI	GAWTC	2 cut(s)	31, 275
PflFI	GACNNNGTC	1 cut(s)	322
PinAI	ACCGGT	1 cut(s)	367
PspN4I	GGNNCC	2 cut(s)	181, 326
PspPI	GGNCC	2 cut(s)	324, 373
PsuI	RGATCY	3 cut(s)	51, 116, 250
PsyI	GACNNNGTC	1 cut(s)	322
SapI	GCTCTTC	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	93
Sau3AI	GATC	3 cut(s)	51, 116, 250
Sau96I	GGNCC	2 cut(s)	324, 373
SduI	GDGCHC	1 cut(s)	233
SetI	ASST	5 cut(s)	12, 62, 150, 188, 305
SfaNI	GCATC	1 cut(s)	251
SfuI	TTCGAA	1 cut(s)	135
SgrAI	CRCCGGYG	1 cut(s)	367
SinI	GGWCC	1 cut(s)	324
Sse9I	AATT	1 cut(s)	20
SsiI	CCGC	1 cut(s)	284
SspMI	CTAG	2 cut(s)	248, 332
TaqI	TCGA	3 cut(s)	135, 227, 273
TasI	AATT	1 cut(s)	20
TfiI	GAWTC	2 cut(s)	31, 275
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TseFI	GTSAC	1 cut(s)	363
Tsp45I	GTSAC	1 cut(s)	363
TspDTI	ATGAA	4 cut(s)	17, 44, 145, 181
TspGWI	ACGGA	1 cut(s)	252
Tth111I	GACNNNGTC	1 cut(s)	322
VpaK11BI	GGWCC	1 cut(s)	324
XspI	CTAG	2 cut(s)	248, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.