Rroxscaffold_2G00088930

UDP-glucuronic acid decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0020683
Physical Location & Seq
Forward (+)
10797743 .. 10798159
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00088930.1

Sequence Viewer

Length: 417 bp
ATGAAACAGCTACACAAGCAATTGAGCGTGAATCACGGGATGGACGAAGAGATCCTAACCTCTCTAGCCTCCTCCTACTCCACCAAAGCCTTTAAACAACCTAAATCTCTCCCCGGATCCATCAACTACATCTTCAAAGAGCAACACCTCCTCTTCATCCTCGTTGGCATTCTTATCGGCTCCACCTTCTTCATCCTCCAACCCACTCTCTCCCGCGTCTCCCTTCCAAGCCCAATCTCTACATCCCTAGATCCTTCTCCTCCGTTCACAACCGAATCAACACCGCCTCCCCCACAACACCGGCAAGGTCCCCGCCGGCCTTGGCAAGCGCGAGCTCGGGATCGTCGTCCTTTGGTGGCGCCGGCTTCATTGGGTCTCACCTCGTTGATAAGTTACTCTCTAGAGAGAACGATGTGA

Protein Analysis

138

Amino Acids

15.38

Weight (kDa)

10.27

Isoelectric Point (pI)

69.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020683)

Species Orthologous Gene IDs
rosa_laevigata RLG00000024107 RLG00000030807
rosa_multiflora Rmu_sc0000031.1_g000037
rosa_roxburghii Rroxscaffold_2G00088930
rosa_rugosa Rorug05G0276100
rosa_samantha Rh5CG384200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 358
AccII CGCG 2 cut(s) 216, 331
AciI CCGC 3 cut(s) 214, 284, 313
AclWI GGATC 5 cut(s) 46, 111, 124, 245, 348
AcyI GRCGYC 1 cut(s) 359
AgsI TTSAA 1 cut(s) 136
AluBI AGCT 2 cut(s) 10, 335
AluI AGCT 2 cut(s) 10, 335
Alw21I GWGCWC 1 cut(s) 337
Alw26I GTCTC 2 cut(s) 223, 380
AlwI GGATC 5 cut(s) 46, 111, 124, 245, 348
Ama87I CYCGRG 1 cut(s) 336
AoxI GGCC 1 cut(s) 317
AspLEI GCGC 2 cut(s) 331, 361
AspS9I GGNCC 1 cut(s) 308
AsuC2I CCSGG 1 cut(s) 114
AsuHPI GGTGA 1 cut(s) 370
AvaI CYCGRG 1 cut(s) 336
AvaII GGWCC 1 cut(s) 308
BamHI GGATCC 1 cut(s) 116
BanI GGYRCC 1 cut(s) 358
BanII GRGCYC 1 cut(s) 337
Bbv12I GWGCWC 1 cut(s) 337
BccI CCATC 2 cut(s) 34, 128
BcgI CGANNNNNNTGC 2 cut(s) 157, 191
BcnI CCSGG 1 cut(s) 114
BcoDI GTCTC 2 cut(s) 223, 380
BfaI CTAG 3 cut(s) 65, 248, 401
BfoI RGCGCY 1 cut(s) 362
Bme1390I CCNGG 1 cut(s) 114
Bme18I GGWCC 1 cut(s) 308
BmeT110I CYCGRG 1 cut(s) 336
BmgT120I GGNCC 1 cut(s) 308
BmiI GGNNCC 4 cut(s) 118, 181, 310, 360
BmrFI CCNGG 1 cut(s) 114
BpuMI CCSGG 1 cut(s) 114
BsaHI GRCGYC 1 cut(s) 359
BsaI GGTCTC 1 cut(s) 380
BsaJI CCNNGG 2 cut(s) 112, 320
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bse118I RCCGGY 3 cut(s) 300, 315, 361
BseDI CCNNGG 2 cut(s) 112, 320
BseGI GGATG 4 cut(s) 45, 156, 192, 242
BseRI GAGGAG 3 cut(s) 61, 140, 249
Bsh1236I CGCG 2 cut(s) 216, 331
BshFI GGCC 1 cut(s) 319
BshNI GGYRCC 1 cut(s) 358
BsiHKAI GWGCWC 1 cut(s) 337
BsiHKCI CYCGRG 1 cut(s) 336
BsiSI CCGG 4 cut(s) 114, 301, 316, 362
BslFI GGGAC 1 cut(s) 294
BsmAI GTCTC 2 cut(s) 223, 380
BsmBI CGTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 294
BsmI GAATGC 1 cut(s) 168
BsnI GGCC 1 cut(s) 319
Bso31I GGTCTC 1 cut(s) 380
BsoBI CYCGRG 1 cut(s) 336
Bsp1286I GDGCHC 1 cut(s) 337
Bsp143I GATC 4 cut(s) 51, 116, 250, 340
BspACI CCGC 3 cut(s) 214, 284, 313
BspANI GGCC 1 cut(s) 319
BspFNI CGCG 2 cut(s) 216, 331
BspLI GGNNCC 4 cut(s) 118, 181, 310, 360
BspPI GGATC 5 cut(s) 46, 111, 124, 245, 348
BspT107I GGYRCC 1 cut(s) 358
BspTNI GGTCTC 1 cut(s) 380
BsrFI RCCGGY 3 cut(s) 300, 315, 361
BssAI RCCGGY 3 cut(s) 300, 315, 361
BssECI CCNNGG 2 cut(s) 112, 320
BssMI GATC 4 cut(s) 51, 116, 250, 340
BssNI GRCGYC 1 cut(s) 359
BssT1I CCWWGG 1 cut(s) 320
Bst6I CTCTTC 2 cut(s) 42, 158
BstACI GRCGYC 1 cut(s) 359
BstC8I GCNNGC 4 cut(s) 317, 327, 333, 363
BstF5I GGATG 4 cut(s) 45, 156, 192, 242
BstFNI CGCG 2 cut(s) 216, 331
BstH2I RGCGCY 1 cut(s) 362
BstHHI GCGC 2 cut(s) 331, 361
BstKTI GATC 4 cut(s) 54, 119, 253, 343
BstMAI GTCTC 2 cut(s) 223, 380
BstMBI GATC 4 cut(s) 51, 116, 250, 340
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstSCI CCNGG 1 cut(s) 112
BstUI CGCG 2 cut(s) 216, 331
BstX2I RGATCY 3 cut(s) 51, 116, 250
BstYI RGATCY 3 cut(s) 51, 116, 250
BsuRI GGCC 1 cut(s) 319
BtsCI GGATG 4 cut(s) 45, 156, 192, 242
Cac8I GCNNGC 4 cut(s) 317, 327, 333, 363
CfoI GCGC 2 cut(s) 331, 361
Cfr10I RCCGGY 3 cut(s) 300, 315, 361
Cfr13I GGNCC 1 cut(s) 308
CseI GACGC 1 cut(s) 205
CviJI RGCY 8 cut(s) 10, 68, 89, 180, 231, 319, 335, 365
CviKI_1 RGCY 8 cut(s) 10, 68, 89, 180, 231, 319, 335, 365
DinI GGCGCC 1 cut(s) 360
DpnI GATC 4 cut(s) 53, 118, 252, 342
DpnII GATC 4 cut(s) 51, 116, 250, 340
DraI TTTAAA 1 cut(s) 94
Eam1104I CTCTTC 2 cut(s) 42, 158
EarI CTCTTC 2 cut(s) 42, 158
Ecl136II GAGCTC 1 cut(s) 335
Eco130I CCWWGG 1 cut(s) 320
Eco24I GRGCYC 1 cut(s) 337
Eco31I GGTCTC 1 cut(s) 380
Eco47I GGWCC 1 cut(s) 308
Eco53kI GAGCTC 1 cut(s) 335
Eco88I CYCGRG 1 cut(s) 336
EcoICRI GAGCTC 1 cut(s) 335
EcoO109I RGGNCCY 1 cut(s) 308
EcoT14I CCWWGG 1 cut(s) 320
EcoT38I GRGCYC 1 cut(s) 337
EgeI GGCGCC 1 cut(s) 360
EheI GGCGCC 1 cut(s) 360
ErhI CCWWGG 1 cut(s) 320
Esp3I CGTCTC 1 cut(s) 223
FaqI GGGAC 1 cut(s) 294
FauI CCCGC 2 cut(s) 221, 320
FokI GGATG 4 cut(s) 52, 143, 179, 229
FriOI GRGCYC 1 cut(s) 337
FspBI CTAG 3 cut(s) 65, 248, 401
GlaI GCGC 2 cut(s) 330, 360
HaeII RGCGCY 1 cut(s) 362
HaeIII GGCC 1 cut(s) 319
HapII CCGG 4 cut(s) 114, 301, 316, 362
HgaI GACGC 1 cut(s) 205
HhaI GCGC 2 cut(s) 331, 361
Hin1I GRCGYC 1 cut(s) 359
Hin6I GCGC 2 cut(s) 329, 359
HinP1I GCGC 2 cut(s) 329, 359
HinfI GANTC 2 cut(s) 31, 275
HpaII CCGG 4 cut(s) 114, 301, 316, 362
HphI GGTGA 1 cut(s) 370
Hpy166II GTNNAC 1 cut(s) 267
Hpy188III TCNNGA 2 cut(s) 338, 401
Hpy8I GTNNAC 1 cut(s) 267
Hpy99I CGWCG 1 cut(s) 348
HpyAV CCTTC 3 cut(s) 196, 233, 264
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
Hsp92I GRCGYC 1 cut(s) 359
HspAI GCGC 2 cut(s) 329, 359
KasI GGCGCC 1 cut(s) 358
KroI GCCGGC 2 cut(s) 315, 361
KroNI GCCGGC 2 cut(s) 317, 363
Kzo9I GATC 4 cut(s) 51, 116, 250, 340
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 4 cut(s) 127, 314, 329, 375
MaeI CTAG 3 cut(s) 65, 248, 401
MaeIII GTNAC 1 cut(s) 392
MalI GATC 4 cut(s) 53, 118, 252, 342
MboI GATC 4 cut(s) 51, 116, 250, 340
MboII GAAGA 4 cut(s) 59, 124, 145, 181
MfeI CAATTG 1 cut(s) 20
MflI RGATCY 3 cut(s) 51, 116, 250
MhlI GDGCHC 1 cut(s) 337
MluCI AATT 1 cut(s) 20
Mly113I GGCGCC 1 cut(s) 359
MmeI TCCRAC 1 cut(s) 223
MroNI GCCGGC 2 cut(s) 315, 361
MseI TTAA 1 cut(s) 93
MspI CCGG 4 cut(s) 114, 301, 316, 362
MspR9I CCNGG 1 cut(s) 114
MunI CAATTG 1 cut(s) 20
Mva1269I GAATGC 1 cut(s) 168
MvnI CGCG 2 cut(s) 216, 331
MwoI GCNNNNNNNGC 1 cut(s) 16
NaeI GCCGGC 2 cut(s) 317, 363
NarI GGCGCC 1 cut(s) 359
NciI CCSGG 1 cut(s) 114
NdeII GATC 4 cut(s) 51, 116, 250, 340
NgoMIV GCCGGC 2 cut(s) 315, 361
NlaIV GGNNCC 4 cut(s) 118, 181, 310, 360
PcsI WCGNNNNNNNCGW 2 cut(s) 42, 343
PctI GAATGC 1 cut(s) 168
PdiI GCCGGC 2 cut(s) 317, 363
PfeI GAWTC 2 cut(s) 31, 275
PluTI GGCGCC 1 cut(s) 362
PpuMI RGGWCCY 1 cut(s) 308
Psp124BI GAGCTC 1 cut(s) 337
Psp5II RGGWCCY 1 cut(s) 308
PspN4I GGNNCC 4 cut(s) 118, 181, 310, 360
PspPI GGNCC 1 cut(s) 308
PspPPI RGGWCCY 1 cut(s) 308
PsuI RGATCY 3 cut(s) 51, 116, 250
SacI GAGCTC 1 cut(s) 337
SaqAI TTAA 1 cut(s) 93
Sau3AI GATC 4 cut(s) 51, 116, 250, 340
Sau96I GGNCC 1 cut(s) 308
ScrFI CCNGG 1 cut(s) 114
SduI GDGCHC 1 cut(s) 337
SetI ASST 8 cut(s) 12, 62, 103, 150, 188, 310, 337, 383
SfoI GGCGCC 1 cut(s) 360
SinI GGWCC 1 cut(s) 308
Sse9I AATT 1 cut(s) 20
SsiI CCGC 3 cut(s) 214, 284, 313
SspDI GGCGCC 1 cut(s) 358
SspMI CTAG 3 cut(s) 65, 248, 401
SstI GAGCTC 1 cut(s) 337
StyD4I CCNGG 1 cut(s) 112
StyI CCWWGG 1 cut(s) 320
TasI AATT 1 cut(s) 20
TfiI GAWTC 2 cut(s) 31, 275
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TspDTI ATGAA 4 cut(s) 17, 145, 181, 357
TspGWI ACGGA 1 cut(s) 252
VpaK11BI GGWCC 1 cut(s) 308
XbaI TCTAGA 1 cut(s) 400
XspI CTAG 3 cut(s) 65, 248, 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.