Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0020033

Physical Location & Seq

Genomic Coordinates Reverse (-)

39891942 .. 39892531

Gene Structure 590 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024866

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCTCTGAGATCCCCAGTGACATCGTCTTCGCGAGGTGGCTCCAACTCTGGAGGCATGGACGGCGACGACGGCTCTGGTGTCGGAAACAACATGCTGAGGTTCTACACCGACGACGCTCCAAGCTTGAAGATCACGCCCACCGTCGTCCTCGTCATGAACCGTCTGCTTTATCGGCTTCGTCACCGCCCTCCACGTGTTCGATCCAGAGTCCTGAAGCTCCGGCAACTCCACAGCTCCTCGGAGACTGGAGTTTCTGAGGGAGAAAAATGGAAGGAGACGATGAAAGAGTCCGCCGAGGATTCGTTGCTCCTTGGAGGGCTTGTGTTTTTCGATCTGAATTTGAAATTGCCATTGTGGAAGTCGCGTGACGAGACTAGGGAGTTCATCAAGAGGGCATGGAATGAGGCAGACGTGATGGAGGTTTCGAGGCAAGAGTTGGAGTTTCTTCTGGACGAAGACTATTACGCGAGGAAGAGGAATCACAGGCCGCAATACATTAGGTCATTAGCTTATGGGTTTGTCAAAGTATTGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0042644 GO:0042646 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043621 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PfkB SOUL

Protein Analysis

180

Amino Acids

20.6

Weight (kDa)

9.48

Isoelectric Point (pI)

55.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sec61_beta	PF03911	30 - 53	2.2e-08	Sec61beta family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020033)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000024866
rosa_multiflora	Rmu_sc0000353.1_g000006
rosa_roxburghii	Rroxscaffold_3G00247700 Rroxscaffold_4G00304020
rosa_rugosa	Rorug06G0014100
rosa_samantha	Rh7CG459400 Rh7CG459500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	34, 367, 470
AciI	CCGC	3 cut(s)	187, 294, 491
AclWI	GGATC	2 cut(s)	6, 198
AcsI	RAATTY	1 cut(s)	340
AcuI	CTGAAG	1 cut(s)	236
AcvI	CACGTG	1 cut(s)	197
AflIII	ACRYGT	1 cut(s)	196
AgsI	TTSAA	2 cut(s)	130, 346
AjiI	CACGTC	1 cut(s)	415
AluBI	AGCT	4 cut(s)	126, 220, 237, 512
AluI	AGCT	4 cut(s)	126, 220, 237, 512
Alw26I	GTCTC	3 cut(s)	239, 272, 368
AlwI	GGATC	2 cut(s)	6, 198
AoxI	GGCC	1 cut(s)	488
ApoI	RAATTY	1 cut(s)	340
ArsI	GACNNNNNNTTYG	2 cut(s)	13, 45
AsuHPI	GGTGA	1 cut(s)	176
BbrPI	CACGTG	1 cut(s)	197
BbsI	GAAGAC	2 cut(s)	21, 465
BbvCI	CCTCAGC	1 cut(s)	98
BccI	CCATC	1 cut(s)	412
BceAI	ACGGC	2 cut(s)	79, 88
BcoDI	GTCTC	3 cut(s)	239, 272, 368
BfaI	CTAG	1 cut(s)	378
BisI	GCNGC	1 cut(s)	491
BlsI	GCNGC	1 cut(s)	492
BmgBI	CACGTC	1 cut(s)	415
BmiI	GGNNCC	1 cut(s)	43
BmrI	ACTGGG	1 cut(s)	11
BmuI	ACTGGG	1 cut(s)	11
BpiI	GAAGAC	2 cut(s)	21, 465
BpmI	CTGGAG	2 cut(s)	72, 270
Bpu10I	CCTNAGC	1 cut(s)	98
BsaAI	YACGTR	1 cut(s)	197
BsaJI	CCNNGG	3 cut(s)	240, 297, 313
BsaXI	ACNNNNNCTCC	2 cut(s)	309, 339
Bse1I	ACTGG	2 cut(s)	17, 253
BseDI	CCNNGG	3 cut(s)	240, 297, 313
BseMII	CTCAG	2 cut(s)	89, 249
BseNI	ACTGG	2 cut(s)	17, 253
BseRI	GAGGAG	1 cut(s)	229
Bsh1236I	CGCG	3 cut(s)	34, 367, 470
BshFI	GGCC	1 cut(s)	490
BsiSI	CCGG	1 cut(s)	223
BsmAI	GTCTC	3 cut(s)	239, 272, 368
BsmBI	CGTCTC	1 cut(s)	272
BsnI	GGCC	1 cut(s)	490
Bsp143I	GATC	4 cut(s)	11, 132, 203, 334
Bsp68I	TCGCGA	1 cut(s)	34
BspACI	CCGC	3 cut(s)	187, 294, 491
BspANI	GGCC	1 cut(s)	490
BspCNI	CTCAG	2 cut(s)	90, 250
BspFNI	CGCG	3 cut(s)	34, 367, 470
BspHI	TCATGA	1 cut(s)	156
BspLI	GGNNCC	1 cut(s)	43
BspPI	GGATC	2 cut(s)	6, 198
BsrI	ACTGG	2 cut(s)	17, 253
BssECI	CCNNGG	3 cut(s)	240, 297, 313
BssMI	GATC	4 cut(s)	11, 132, 203, 334
BssT1I	CCWWGG	1 cut(s)	313
Bst4CI	ACNGT	2 cut(s)	145, 164
Bst6I	CTCTTC	1 cut(s)	470
BstBAI	YACGTR	1 cut(s)	197
BstDEI	CTNAG	3 cut(s)	8, 98, 258
BstFNI	CGCG	3 cut(s)	34, 367, 470
BstKTI	GATC	4 cut(s)	14, 135, 206, 337
BstMAI	GTCTC	3 cut(s)	239, 272, 368
BstMBI	GATC	4 cut(s)	11, 132, 203, 334
BstMWI	GCNNNNNNNGC	3 cut(s)	63, 72, 175
BstNSI	RCATGY	1 cut(s)	97
BstUI	CGCG	3 cut(s)	34, 367, 470
BstV2I	GAAGAC	2 cut(s)	21, 465
BstX2I	RGATCY	1 cut(s)	11
BstYI	RGATCY	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	490
BtrI	CACGTC	1 cut(s)	415
BtsIMutI	CAGTG	1 cut(s)	24
BtuMI	TCGCGA	1 cut(s)	34
CciI	TCATGA	1 cut(s)	156
CseI	GACGC	1 cut(s)	125
CviAII	CATG	4 cut(s)	58, 94, 157, 399
DdeI	CTNAG	3 cut(s)	8, 98, 258
DpnI	GATC	4 cut(s)	13, 134, 205, 336
DpnII	GATC	4 cut(s)	11, 132, 203, 334
Eam1104I	CTCTTC	1 cut(s)	470
EarI	CTCTTC	1 cut(s)	470
EciI	GGCGGA	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	313
Eco57I	CTGAAG	1 cut(s)	236
Eco72I	CACGTG	1 cut(s)	197
EcoT14I	CCWWGG	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	313
Esp3I	CGTCTC	1 cut(s)	272
FaeI	CATG	4 cut(s)	61, 97, 160, 402
FaiI	YATR	5 cut(s)	59, 95, 158, 400, 516
FatI	CATG	4 cut(s)	57, 93, 156, 398
Fnu4HI	GCNGC	1 cut(s)	491
Fsp4HI	GCNGC	1 cut(s)	491
FspBI	CTAG	1 cut(s)	378
GluI	GCNGC	1 cut(s)	491
GsuI	CTGGAG	2 cut(s)	72, 270
HaeIII	GGCC	1 cut(s)	490
HapII	CCGG	1 cut(s)	223
HgaI	GACGC	1 cut(s)	125
Hin1II	CATG	4 cut(s)	61, 97, 160, 402
HindIII	AAGCTT	1 cut(s)	124
HinfI	GANTC	4 cut(s)	210, 290, 302, 481
HpaII	CCGG	1 cut(s)	223
HphI	GGTGA	1 cut(s)	176
Hpy188I	TCNGA	5 cut(s)	9, 86, 244, 259, 339
Hpy188III	TCNNGA	7 cut(s)	33, 51, 157, 207, 214, 391, 452
Hpy99I	CGWCG	5 cut(s)	71, 74, 116, 119, 149
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	2 cut(s)	145, 164
HpyCH4IV	ACGT	2 cut(s)	196, 414
HpyF10VI	GCNNNNNNNGC	3 cut(s)	63, 72, 175
HpyF3I	CTNAG	3 cut(s)	8, 98, 258
HpySE526I	ACGT	2 cut(s)	196, 414
Hsp92II	CATG	4 cut(s)	61, 97, 160, 402
Kzo9I	GATC	4 cut(s)	11, 132, 203, 334
LmnI	GCTCC	5 cut(s)	47, 124, 225, 242, 315
LpnPI	CCDG	9 cut(s)	30, 36, 63, 220, 227, 234, 236, 437, 472
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	2 cut(s)	196, 414
MaeIII	GTNAC	3 cut(s)	19, 182, 368
MalI	GATC	4 cut(s)	13, 134, 205, 336
MboI	GATC	4 cut(s)	11, 132, 203, 334
MboII	GAAGA	5 cut(s)	21, 142, 440, 470, 487
MflI	RGATCY	1 cut(s)	11
MluCI	AATT	2 cut(s)	340, 347
MlyI	GAGTC	2 cut(s)	219, 299
MmeI	TCCRAC	3 cut(s)	64, 69, 420
MseI	TTAA	1 cut(s)	538
MspI	CCGG	1 cut(s)	223
MvnI	CGCG	3 cut(s)	34, 367, 470
MwoI	GCNNNNNNNGC	3 cut(s)	63, 72, 175
NdeII	GATC	4 cut(s)	11, 132, 203, 334
NlaIII	CATG	4 cut(s)	61, 97, 160, 402
NlaIV	GGNNCC	1 cut(s)	43
NmeAIII	GCCGAG	1 cut(s)	322
NmuCI	GTSAC	3 cut(s)	19, 182, 368
NruI	TCGCGA	1 cut(s)	34
NspI	RCATGY	1 cut(s)	97
PagI	TCATGA	1 cut(s)	156
PfeI	GAWTC	2 cut(s)	302, 481
PflFI	GACNNNGTC	1 cut(s)	25
PkrI	GCNGC	1 cut(s)	492
PleI	GAGTC	2 cut(s)	218, 298
PmaCI	CACGTG	1 cut(s)	197
PmlI	CACGTG	1 cut(s)	197
PpsI	GAGTC	2 cut(s)	218, 298
Ppu21I	YACGTR	1 cut(s)	197
PspCI	CACGTG	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	11
PsyI	GACNNNGTC	1 cut(s)	25
RruI	TCGCGA	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	538
SatI	GCNGC	1 cut(s)	491
Sau3AI	GATC	4 cut(s)	11, 132, 203, 334
SchI	GAGTC	2 cut(s)	219, 299
Sse9I	AATT	2 cut(s)	340, 347
SsiI	CCGC	3 cut(s)	187, 294, 491
SspMI	CTAG	1 cut(s)	378
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	2 cut(s)	145, 164
TaiI	ACGT	2 cut(s)	199, 417
TaqI	TCGA	3 cut(s)	202, 333, 428
TasI	AATT	2 cut(s)	340, 347
TauI	GCSGC	1 cut(s)	493
TfiI	GAWTC	2 cut(s)	302, 481
Tru1I	TTAA	1 cut(s)	538
Tru9I	TTAA	1 cut(s)	538
TscAI	CASTG	1 cut(s)	24
TseFI	GTSAC	3 cut(s)	19, 182, 368
Tsp45I	GTSAC	3 cut(s)	19, 182, 368
TspDTI	ATGAA	3 cut(s)	173, 299, 376
TspRI	CASTG	1 cut(s)	24
Tth111I	GACNNNGTC	1 cut(s)	25
XapI	RAATTY	1 cut(s)	340
XceI	RCATGY	1 cut(s)	97
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.