Rmu_sc0000353.1_g000006

pfkB family carbohydrate kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000353.1
Physical Location & Seq
Reverse (-)
23456 .. 30933
7478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000353.1_g000006.1.cds

Sequence Viewer

Length: 1716 bp
atgatccacgatcaaccgccaagcggtaaggtaacgcctcataaagaagatgaccgctacgtggcattacagtcaagctgctcgctacctaacgcccactgcctctgcggcatccccgagctccacactcacgccttcgcggtacccccgaactccgcgctcacgagctctaatgctcacgccttcgcgacaaccccgaacttacgttcacgccttcgcggcaaccccgagctttctgctcatgccttcctaacacccctgagctttccgctcacatcttcccggcacccccgagcttttcgctcatgccttcctggcacccccgagctttccgctcacgccttccaaacacccacgagctttccgctcaggccttcgcggcaacccttatcttccgctcacgccttcatggcaaccccgaacttcctctcacgccttagcggcaccctcgagcttccacttatgccttcgcactttcccctcactccttcccggcaaccacgagctttccgctcatgctttcctggcacccttgagctttcccctgatgccttcccggcacccctgagctttctgctcacgccctcccggcacccacgagctttccgctcacgccttcccggcacccccagagttttcctctcacgccttcccggcacccccgagcttttcggtcatgccttcccgacacccccaagctttccgctcaagccttctcagcacccccgagatttcacgctcttgccttccggcattcccgttaacgagtcccttattgcttacagagtttggggacttgtaagatctctgtgccacccgatacctctactagcaaggctattttctatgtcaccaagcataagcaacaccctcttaggggagcccacaagccgtggtggtacccaaccgcgacatgcatcccttagcctgatgttcaagctacgccattgtagtcggaagcgaccaatacctcgccgggaagccaccttcccggccttgccaagttgcctccataataggcctttctacactagaatagtggttttagcagcccacattgaaaaacataaacaacatgctgaggttctaccccgacgattctccaggcttgaagatcacgcccacagtcatcctcttcatgagccatctgcttcattggcttcgttaccgccctccacatgttcggtaagttctagctccaccgatctaccggctcgtaacacgaatcgttctagatccagagttctgaagctccggcgacgccgcagctcctcggagacaggagttctggagggagaaacgtggaaggaaatggtgaaagagtccgccgaggattcgttgctccttggggggcttgtgtttttcaatatgaatttgaaattgccattgtggaagtcgcgtgacgagactagagagttcatcaaaagggcgtggaatgaggcagacatgattgaggttttgaggcaagagttagagtttcttctggacgaagactattacgcaaggaagaggaattacaggccgcagtgcattagcttatggggtccgcgacccggcttgtcggagggacgtcgggggtttgcggagctggtctacggtccggtggagtcgccggcgagcgttctgcatggctgcacagaacctgcaactgcaggtgaggtggctgcccagaaaccggcaaccccgacttcctccgacctcaatcgccacccataa

Protein Analysis

571

Amino Acids

63.53

Weight (kDa)

10.09

Isoelectric Point (pI)

68.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020033)

Species Orthologous Gene IDs
rosa_laevigata RLG00000024866
rosa_multiflora Rmu_sc0000353.1_g000006
rosa_roxburghii Rroxscaffold_3G00247700 Rroxscaffold_4G00304020
rosa_rugosa Rorug06G0014100
rosa_samantha Rh7CG459400 Rh7CG459500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1643
AatII GACGTC 1 cut(s) 1573
Acc36I ACCTGC 2 cut(s) 1643, 1651
Acc65I GGTACC 2 cut(s) 142, 899
AccBSI CCGCTC 7 cut(s) 271, 335, 367, 398, 513, 609, 706
AccI GTMKAC 1 cut(s) 1593
AccII CGCG 8 cut(s) 140, 158, 188, 219, 379, 910, 1399, 1549
AclWI GGATC 1 cut(s) 1230
AcsI RAATTY 1 cut(s) 1372
AcuI CTGAAG 1 cut(s) 1268
AcyI GRCGYC 2 cut(s) 1261, 1570
AfaI GTAC 2 cut(s) 144, 901
AfiI CCNNNNNNNGG 6 cut(s) 23, 61, 876, 877, 1553, 1675
AflIII ACRYGT 1 cut(s) 1178
AgsI TTSAA 5 cut(s) 937, 1061, 1112, 1366, 1378
AjnI CCWGG 3 cut(s) 313, 523, 1103
Alw21I GWGCWC 2 cut(s) 123, 170
Alw26I GTCTC 2 cut(s) 1271, 1400
AlwI GGATC 1 cut(s) 1230
AlwNI CAGNNNCTG 1 cut(s) 1643
Ama87I CYCGRG 7 cut(s) 116, 227, 291, 323, 449, 662, 726
AoxI GGCC 4 cut(s) 371, 993, 1019, 1520
ApeKI GCWGC 5 cut(s) 78, 1049, 1266, 1632, 1664
ApoI RAATTY 1 cut(s) 1372
Asp718I GGTACC 2 cut(s) 142, 899
AspLEI GCGC 1 cut(s) 160
AspS9I GGNCC 2 cut(s) 1544, 1598
AsuC2I CCSGG 9 cut(s) 283, 493, 557, 589, 621, 654, 977, 992, 1554
AsuHPI GGTGA 3 cut(s) 843, 1327, 1667
AvaI CYCGRG 7 cut(s) 116, 227, 291, 323, 449, 662, 726
AvaII GGWCC 2 cut(s) 1544, 1598
BanII GRGCYC 3 cut(s) 123, 170, 885
BarI GAAGNNNNNNTAC 2 cut(s) 1499, 1531
BauI CACGAG 4 cut(s) 163, 355, 501, 597
BbsI GAAGAC 1 cut(s) 1497
Bbv12I GWGCWC 2 cut(s) 123, 170
BbvCI CCTCAGC 1 cut(s) 1080
BbvI GCAGC 5 cut(s) 65, 1061, 1278, 1619, 1651
BccI CCATC 1 cut(s) 1153
BceAI ACGGC 1 cut(s) 876
BcgI CGANNNNNNTGC 4 cut(s) 218, 252, 1606, 1640
BciT130I CCWGG 3 cut(s) 315, 525, 1105
BcnI CCSGG 9 cut(s) 283, 493, 557, 589, 621, 654, 977, 992, 1554
BcoDI GTCTC 2 cut(s) 1271, 1400
BfaI CTAG 5 cut(s) 830, 1032, 1194, 1233, 1410
BfmI CTRYAG 1 cut(s) 1650
BfuAI ACCTGC 2 cut(s) 1643, 1651
BglII AGATCT 1 cut(s) 803
Bme18I GGWCC 2 cut(s) 1544, 1598
BmeT110I CYCGRG 7 cut(s) 116, 227, 291, 323, 449, 662, 726
BmgT120I GGNCC 2 cut(s) 1544, 1598
BmsI GCATC 3 cut(s) 120, 538, 926
BpiI GAAGAC 1 cut(s) 1497
BplI GAGNNNNNCTC 2 cut(s) 624, 656
BpmI CTGGAG 2 cut(s) 1087, 1310
Bpu10I CCTNAGC 6 cut(s) 260, 368, 437, 566, 923, 1080
BpuEI CTTGAG 2 cut(s) 554, 692
BpuMI CCSGG 9 cut(s) 283, 493, 557, 589, 621, 654, 977, 992, 1554
BsaAI YACGTR 1 cut(s) 61
BsaHI GRCGYC 2 cut(s) 1261, 1570
BsaJI CCNNGG 4 cut(s) 892, 1272, 1329, 1345
BsaWI WCCGGW 1 cut(s) 1600
Bsc4I CCNNNNNNNGG 6 cut(s) 23, 61, 876, 877, 1553, 1675
Bse118I RCCGGY 3 cut(s) 1210, 1612, 1675
BseBI CCWGG 3 cut(s) 315, 525, 1105
BseDI CCNNGG 4 cut(s) 892, 1272, 1329, 1345
BseGI GGATG 3 cut(s) 111, 917, 1129
BseLI CCNNNNNNNGG 6 cut(s) 23, 61, 876, 877, 1553, 1675
BseMII CTCAG 5 cut(s) 251, 382, 557, 731, 1071
BseRI GAGGAG 1 cut(s) 1261
BseXI GCAGC 5 cut(s) 65, 1061, 1278, 1619, 1651
BsgI GTGCAG 1 cut(s) 1618
Bsh1236I CGCG 8 cut(s) 140, 158, 188, 219, 379, 910, 1399, 1549
BshFI GGCC 4 cut(s) 373, 995, 1021, 1522
BsiHKAI GWGCWC 2 cut(s) 123, 170
BsiHKCI CYCGRG 7 cut(s) 116, 227, 291, 323, 449, 662, 726
BslFI GGGAC 3 cut(s) 754, 807, 1581
BslI CCNNNNNNNGG 6 cut(s) 23, 61, 876, 877, 1553, 1675
BsmAI GTCTC 2 cut(s) 1271, 1400
BsmFI GGGAC 3 cut(s) 754, 807, 1581
BsmI GAATGC 1 cut(s) 753
BsnI GGCC 4 cut(s) 373, 995, 1021, 1522
BsoBI CYCGRG 7 cut(s) 116, 227, 291, 323, 449, 662, 726
Bsp1286I GDGCHC 3 cut(s) 123, 170, 885
Bsp143I GATC 6 cut(s) 3, 10, 803, 1114, 1204, 1235
Bsp68I TCGCGA 1 cut(s) 188
BspANI GGCC 4 cut(s) 373, 995, 1021, 1522
BspCNI CTCAG 5 cut(s) 252, 381, 558, 730, 1072
BspFNI CGCG 8 cut(s) 140, 158, 188, 219, 379, 910, 1399, 1549
BspHI TCATGA 1 cut(s) 1138
BspMAI CTGCAG 1 cut(s) 1654
BspMI ACCTGC 2 cut(s) 1643, 1651
BspPI GGATC 1 cut(s) 1230
BsrBI CCGCTC 7 cut(s) 271, 335, 367, 398, 513, 609, 706
BsrFI RCCGGY 3 cut(s) 1210, 1612, 1675
BssAI RCCGGY 3 cut(s) 1210, 1612, 1675
BssECI CCNNGG 4 cut(s) 892, 1272, 1329, 1345
BssMI GATC 6 cut(s) 3, 10, 803, 1114, 1204, 1235
BssNI GRCGYC 2 cut(s) 1261, 1570
BssSI CACGAG 4 cut(s) 163, 355, 501, 597
BssT1I CCWWGG 1 cut(s) 1345
Bst2BI CACGAG 4 cut(s) 163, 355, 501, 597
Bst2UI CCWGG 3 cut(s) 315, 525, 1105
Bst4CI ACNGT 3 cut(s) 72, 1127, 1598
Bst6I CTCTTC 2 cut(s) 1140, 1502
BstACI GRCGYC 2 cut(s) 1261, 1570
BstBAI YACGTR 1 cut(s) 61
BstC8I GCNNGC 3 cut(s) 83, 1614, 1618
BstDEI CTNAG 8 cut(s) 260, 368, 437, 566, 717, 874, 923, 1080
BstDSI CCRYGG 1 cut(s) 892
BstF5I GGATG 3 cut(s) 111, 917, 1129
BstFNI CGCG 8 cut(s) 140, 158, 188, 219, 379, 910, 1399, 1549
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 6 cut(s) 6, 13, 806, 1117, 1207, 1238
BstMAI GTCTC 2 cut(s) 1271, 1400
BstMBI GATC 6 cut(s) 3, 10, 803, 1114, 1204, 1235
BstNI CCWGG 3 cut(s) 315, 525, 1105
BstNSI RCATGY 3 cut(s) 917, 1079, 1182
BstSFI CTRYAG 1 cut(s) 1650
BstUI CGCG 8 cut(s) 140, 158, 188, 219, 379, 910, 1399, 1549
BstV1I GCAGC 5 cut(s) 65, 1061, 1278, 1619, 1651
BstV2I GAAGAC 1 cut(s) 1497
BstX2I RGATCY 2 cut(s) 803, 1235
BstYI RGATCY 2 cut(s) 803, 1235
BsuRI GGCC 4 cut(s) 373, 995, 1021, 1522
BtgI CCRYGG 1 cut(s) 892
BtsCI GGATG 3 cut(s) 111, 917, 1129
BtsI GCAGTG 2 cut(s) 97, 1532
BtsIMutI CAGTG 2 cut(s) 97, 1532
BtuMI TCGCGA 1 cut(s) 188
BveI ACCTGC 2 cut(s) 1643, 1651
Cac8I GCNNGC 3 cut(s) 83, 1614, 1618
CaiI CAGNNNCTG 1 cut(s) 1643
CciI TCATGA 1 cut(s) 1138
CfoI GCGC 1 cut(s) 160
Cfr10I RCCGGY 3 cut(s) 1210, 1612, 1675
Cfr13I GGNCC 2 cut(s) 1544, 1598
CpoI CGGWCCG 1 cut(s) 1598
CseI GACGC 1 cut(s) 1269
Csp6I GTAC 2 cut(s) 143, 900
CspI CGGWCCG 1 cut(s) 1598
CviQI GTAC 2 cut(s) 143, 900
DdeI CTNAG 8 cut(s) 260, 368, 437, 566, 717, 874, 923, 1080
DpnI GATC 6 cut(s) 5, 12, 805, 1116, 1206, 1237
DpnII GATC 6 cut(s) 3, 10, 803, 1114, 1204, 1235
Eam1104I CTCTTC 2 cut(s) 1140, 1502
EarI CTCTTC 2 cut(s) 1140, 1502
EciI GGCGGA 1 cut(s) 1315
Ecl136II GAGCTC 2 cut(s) 121, 168
Eco130I CCWWGG 1 cut(s) 1345
Eco147I AGGCCT 2 cut(s) 373, 1021
Eco24I GRGCYC 3 cut(s) 123, 170, 885
Eco47I GGWCC 2 cut(s) 1544, 1598
Eco53kI GAGCTC 2 cut(s) 121, 168
Eco57I CTGAAG 1 cut(s) 1268
Eco88I CYCGRG 7 cut(s) 116, 227, 291, 323, 449, 662, 726
EcoICRI GAGCTC 2 cut(s) 121, 168
EcoRII CCWGG 3 cut(s) 313, 523, 1103
EcoT14I CCWWGG 1 cut(s) 1345
EcoT22I ATGCAT 1 cut(s) 919
EcoT38I GRGCYC 3 cut(s) 123, 170, 885
ErhI CCWWGG 1 cut(s) 1345
FaqI GGGAC 3 cut(s) 754, 807, 1581
FblI GTMKAC 1 cut(s) 1593
FokI GGATG 3 cut(s) 98, 904, 1116
FriOI GRGCYC 3 cut(s) 123, 170, 885
FspBI CTAG 5 cut(s) 830, 1032, 1194, 1233, 1410
GlaI GCGC 1 cut(s) 159
GsuI CTGGAG 2 cut(s) 1087, 1310
HaeIII GGCC 4 cut(s) 373, 995, 1021, 1522
HgaI GACGC 1 cut(s) 1269
HhaI GCGC 1 cut(s) 160
Hin1I GRCGYC 2 cut(s) 1261, 1570
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HincII GTYRAC 1 cut(s) 763
HindII GTYRAC 1 cut(s) 763
HindIII AAGCTT 1 cut(s) 697
HinfI GANTC 6 cut(s) 767, 1098, 1225, 1322, 1334, 1607
HpaI GTTAAC 1 cut(s) 763
HphI GGTGA 3 cut(s) 843, 1327, 1667
Hpy166II GTNNAC 3 cut(s) 209, 763, 1594
Hpy188I TCNGA 5 cut(s) 957, 1248, 1276, 1564, 1696
Hpy188III TCNNGA 8 cut(s) 163, 187, 685, 1139, 1233, 1239, 1289, 1484
Hpy8I GTNNAC 3 cut(s) 209, 763, 1594
Hpy99I CGWCG 3 cut(s) 1098, 1263, 1575
HpyCH4III ACNGT 3 cut(s) 72, 1127, 1598
HpyCH4IV ACGT 4 cut(s) 60, 205, 1301, 1570
HpyCH4V TGCA 6 cut(s) 917, 1530, 1627, 1635, 1646, 1652
HpyF3I CTNAG 8 cut(s) 260, 368, 437, 566, 717, 874, 923, 1080
HpySE526I ACGT 4 cut(s) 60, 205, 1301, 1570
Hsp92I GRCGYC 2 cut(s) 1261, 1570
HspAI GCGC 1 cut(s) 158
KpnI GGTACC 2 cut(s) 146, 903
KroI GCCGGC 1 cut(s) 1612
KroNI GCCGGC 1 cut(s) 1614
KspAI GTTAAC 1 cut(s) 763
Kzo9I GATC 6 cut(s) 3, 10, 803, 1114, 1204, 1235
LmnI GCTCC 7 cut(s) 126, 880, 1202, 1257, 1274, 1347, 1585
Lsp1109I GCAGC 5 cut(s) 65, 1061, 1278, 1619, 1651
LweI GCATC 3 cut(s) 120, 538, 926
MaeI CTAG 5 cut(s) 830, 1032, 1194, 1233, 1410
MaeII ACGT 4 cut(s) 60, 205, 1301, 1570
MaeIII GTNAC 5 cut(s) 31, 849, 1164, 1217, 1400
MalI GATC 6 cut(s) 5, 12, 805, 1116, 1206, 1237
MbiI CCGCTC 7 cut(s) 271, 335, 367, 398, 513, 609, 706
MboI GATC 6 cut(s) 3, 10, 803, 1114, 1204, 1235
MboII GAAGA 8 cut(s) 59, 270, 384, 1124, 1127, 1472, 1502, 1519
MflI RGATCY 2 cut(s) 803, 1235
MhlI GDGCHC 3 cut(s) 123, 170, 885
MluCI AATT 3 cut(s) 1372, 1379, 1513
MlyI GAGTC 3 cut(s) 776, 1331, 1616
MmeI TCCRAC 2 cut(s) 935, 1542
Mph1103I ATGCAT 1 cut(s) 919
MreI CGCCGGCG 1 cut(s) 1612
MroNI GCCGGC 1 cut(s) 1612
MseI TTAA 1 cut(s) 762
Mva1269I GAATGC 1 cut(s) 753
MvaI CCWGG 3 cut(s) 315, 525, 1105
MvnI CGCG 8 cut(s) 140, 158, 188, 219, 379, 910, 1399, 1549
NaeI GCCGGC 1 cut(s) 1614
NciI CCSGG 9 cut(s) 283, 493, 557, 589, 621, 654, 977, 992, 1554
NdeII GATC 6 cut(s) 3, 10, 803, 1114, 1204, 1235
NgoMIV GCCGGC 1 cut(s) 1612
NmeAIII GCCGAG 1 cut(s) 1354
NmuCI GTSAC 2 cut(s) 849, 1400
NruI TCGCGA 1 cut(s) 188
NsiI ATGCAT 1 cut(s) 919
NspI RCATGY 3 cut(s) 917, 1079, 1182
PaeR7I CTCGAG 1 cut(s) 449
PagI TCATGA 1 cut(s) 1138
PaqCI CACCTGC 1 cut(s) 1643
PceI AGGCCT 2 cut(s) 373, 1021
PciI ACATGT 1 cut(s) 1178
PctI GAATGC 1 cut(s) 753
PdiI GCCGGC 1 cut(s) 1614
PfeI GAWTC 3 cut(s) 1098, 1225, 1334
PleI GAGTC 3 cut(s) 775, 1330, 1615
PpsI GAGTC 3 cut(s) 775, 1330, 1615
Ppu21I YACGTR 1 cut(s) 61
PscI ACATGT 1 cut(s) 1178
Psp124BI GAGCTC 2 cut(s) 123, 170
Psp6I CCWGG 3 cut(s) 313, 523, 1103
PspGI CCWGG 3 cut(s) 313, 523, 1103
PspPI GGNCC 2 cut(s) 1544, 1598
PspXI VCTCGAGB 1 cut(s) 449
PstI CTGCAG 1 cut(s) 1654
PstNI CAGNNNCTG 1 cut(s) 1643
PsuI RGATCY 2 cut(s) 803, 1235
RruI TCGCGA 1 cut(s) 188
RsaI GTAC 2 cut(s) 144, 901
RsaNI GTAC 2 cut(s) 143, 900
Rsr2I CGGWCCG 1 cut(s) 1598
RsrII CGGWCCG 1 cut(s) 1598
SacI GAGCTC 2 cut(s) 123, 170
SaqAI TTAA 1 cut(s) 762
Sau3AI GATC 6 cut(s) 3, 10, 803, 1114, 1204, 1235
Sau96I GGNCC 2 cut(s) 1544, 1598
SchI GAGTC 3 cut(s) 776, 1331, 1616
SduI GDGCHC 3 cut(s) 123, 170, 885
SfaNI GCATC 3 cut(s) 120, 538, 926
SfcI CTRYAG 1 cut(s) 1650
Sfr274I CTCGAG 1 cut(s) 449
SgrAI CRCCGGYG 1 cut(s) 1612
SinI GGWCC 2 cut(s) 1544, 1598
SlaI CTCGAG 1 cut(s) 449
SmlI CTYRAG 3 cut(s) 449, 533, 707
SmoI CTYRAG 3 cut(s) 449, 533, 707
Sse9I AATT 3 cut(s) 1372, 1379, 1513
SseBI AGGCCT 2 cut(s) 373, 1021
SspMI CTAG 5 cut(s) 830, 1032, 1194, 1233, 1410
SstI GAGCTC 2 cut(s) 123, 170
StuI AGGCCT 2 cut(s) 373, 1021
StyI CCWWGG 1 cut(s) 1345
TaaI ACNGT 3 cut(s) 72, 1127, 1598
TaiI ACGT 4 cut(s) 63, 208, 1304, 1573
TaqI TCGA 1 cut(s) 450
TaqII GACCGA 1 cut(s) 662
TasI AATT 3 cut(s) 1372, 1379, 1513
TauI GCSGC 6 cut(s) 111, 222, 382, 444, 1266, 1525
TfiI GAWTC 3 cut(s) 1098, 1225, 1334
Tru1I TTAA 1 cut(s) 762
Tru9I TTAA 1 cut(s) 762
TscAI CASTG 2 cut(s) 104, 1532
TseFI GTSAC 2 cut(s) 849, 1400
TseI GCWGC 5 cut(s) 78, 1049, 1266, 1632, 1664
Tsp45I GTSAC 2 cut(s) 849, 1400
TspDTI ATGAA 5 cut(s) 397, 1127, 1143, 1385, 1408
TspRI CASTG 2 cut(s) 104, 1532
VpaK11BI GGWCC 2 cut(s) 1544, 1598
XapI RAATTY 1 cut(s) 1372
XbaI TCTAGA 1 cut(s) 1232
XceI RCATGY 3 cut(s) 917, 1079, 1182
XhoI CTCGAG 1 cut(s) 449
XmiI GTMKAC 1 cut(s) 1593
XspI CTAG 5 cut(s) 830, 1032, 1194, 1233, 1410
ZraI GACGTC 1 cut(s) 1571
Zsp2I ATGCAT 1 cut(s) 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.