RLG00000025450

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
45817862 .. 45818566
705 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025450

Sequence Viewer

Length: 705 bp
ATGCAGACCCTTCACTTCAAAACCCAATCCTTCATCCCAAAACCCTCTTCTTTCTTCATAAACCCCATTGCCAAAACCCACAATTCGCTTCAAAACACAGTCTTTGCACCAAGATCTCATCTTTTTAACTTCTCACTCTCACTCTCTCACAGAACCCAGACCCAGAAACCGATTGTAAATTCAAGGAAGAAGAGAACGGCAAATGGGTCTTTGAAATTGCAGAGATTCTTGCTCCGATTGGTGCCCATTATCGCGTCGAACCTCAAGCTGTTGCCTCAGCCGTTGGATCTGGTTCTTGAAGAAATCGGCGGCGGAGATGGCGGCGGAGGAGGTCTGGGTTTTTGGAAGGGTTTTGGGGGCGGAGGGTTTGATGGGTTCAGAAGCAAAAGGAAGAGGAAATTGCTGTTGCTGTTTTTGTTTTATGGGATTTTGGTGACTTGTGGTTTTGGGTTGTTGTCTGGGAGAGATTTGGAGAGCAATGTGCTTTGGTGTGGATTGGTTTTTGGAGCAATTGGGGTTGGTTTGGTTCATTGGTGGGAGAAGAGAGGTCTTTTTGGGTTTTTTGTTTGTGGTGTTTTGGTGGGTTCAGGGTTTAAGAGAAAGGAATTGGTGAATTGGGGATCGAAGATTAGGCCTATAATGGAGCATGTGACATTGAGAACAAGAAGAAGAAGAAGAAGAAGAAGTGGAAGAAGAGCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

26.33

Weight (kDa)

11.75

Isoelectric Point (pI)

52.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017154)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G27440
fragaria_vesca FvH4_6g05580
malus_domestica MD04G1207300.v1.1 MD12G1221400.v1.1
prunus_persica Prupe.6G328200_v2.0.a1
pyrus_communis pycom04g18340 pycom12g20750
rosa_chinensis RchiOBHm_Chr3g0454361
rosa_laevigata RLG00000025450 RLG00000025457
rosa_roxburghii Rroxscaffold_6G00425170
rosa_rugosa Rorug02G0654500
rosa_wichuraiana Rw3G004510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 241
AccII CGCG 1 cut(s) 254
AciI CCGC 5 cut(s) 309, 312, 321, 324, 360
AclWI GGATC 2 cut(s) 294, 628
AcsI RAATTY 1 cut(s) 178
AgsI TTSAA 5 cut(s) 19, 92, 183, 214, 299
AjuI GAANNNNNNNTTGG 2 cut(s) 31, 63
AluBI AGCT 1 cut(s) 268
AluI AGCT 1 cut(s) 268
AlwI GGATC 2 cut(s) 294, 628
AoxI GGCC 1 cut(s) 632
ApoI RAATTY 1 cut(s) 178
AsuHPI GGTGA 2 cut(s) 445, 622
BaeGI GKGCMC 1 cut(s) 246
BanI GGYRCC 1 cut(s) 241
BbvCI CCTCAGC 1 cut(s) 276
BccI CCATC 2 cut(s) 311, 365
BceAI ACGGC 2 cut(s) 213, 265
BglII AGATCT 1 cut(s) 113
BisI GCNGC 2 cut(s) 310, 322
BlsI GCNGC 2 cut(s) 311, 323
BmiI GGNNCC 1 cut(s) 243
Bpu10I CCTNAGC 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 248
Bse3DI GCAATG 2 cut(s) 66, 484
BseGI GGATG 1 cut(s) 33
BseMI GCAATG 2 cut(s) 66, 484
BseMII CTCAG 1 cut(s) 290
BseRI GAGGAG 1 cut(s) 342
BseSI GKGCMC 1 cut(s) 246
Bsh1236I CGCG 1 cut(s) 254
BshFI GGCC 1 cut(s) 634
BshNI GGYRCC 1 cut(s) 241
BsnI GGCC 1 cut(s) 634
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 3 cut(s) 113, 286, 620
BspACI CCGC 5 cut(s) 309, 312, 321, 324, 360
BspANI GGCC 1 cut(s) 634
BspCNI CTCAG 1 cut(s) 289
BspFNI CGCG 1 cut(s) 254
BspLI GGNNCC 1 cut(s) 243
BspPI GGATC 2 cut(s) 294, 628
BspQI GCTCTTC 1 cut(s) 688
BspT107I GGYRCC 1 cut(s) 241
BsrDI GCAATG 2 cut(s) 66, 484
BssMI GATC 3 cut(s) 113, 286, 620
Bst4CI ACNGT 1 cut(s) 100
Bst6I CTCTTC 5 cut(s) 52, 185, 386, 536, 688
BstDEI CTNAG 1 cut(s) 276
BstF5I GGATG 1 cut(s) 33
BstFNI CGCG 1 cut(s) 254
BstKTI GATC 3 cut(s) 116, 289, 623
BstMBI GATC 3 cut(s) 113, 286, 620
BstMWI GCNNNNNNNGC 1 cut(s) 318
BstNSI RCATGY 1 cut(s) 650
BstSLI GKGCMC 1 cut(s) 246
BstUI CGCG 1 cut(s) 254
BstX2I RGATCY 2 cut(s) 113, 286
BstYI RGATCY 2 cut(s) 113, 286
BsuRI GGCC 1 cut(s) 634
BtsCI GGATG 1 cut(s) 33
CseI GACGC 1 cut(s) 243
CviAII CATG 1 cut(s) 647
CviJI RGCY 3 cut(s) 268, 280, 634
CviKI_1 RGCY 3 cut(s) 268, 280, 634
DdeI CTNAG 1 cut(s) 276
DpnI GATC 3 cut(s) 115, 288, 622
DpnII GATC 3 cut(s) 113, 286, 620
Eam1104I CTCTTC 5 cut(s) 52, 185, 386, 536, 688
EarI CTCTTC 5 cut(s) 52, 185, 386, 536, 688
EciI GGCGGA 3 cut(s) 327, 339, 375
Eco147I AGGCCT 1 cut(s) 634
FaeI CATG 1 cut(s) 650
FaiI YATR 4 cut(s) 59, 423, 638, 648
FatI CATG 1 cut(s) 646
Fnu4HI GCNGC 2 cut(s) 310, 322
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 2 cut(s) 310, 322
GluI GCNGC 2 cut(s) 310, 322
HaeIII GGCC 1 cut(s) 634
HgaI GACGC 1 cut(s) 243
Hin1II CATG 1 cut(s) 650
HinfI GANTC 1 cut(s) 225
HphI GGTGA 2 cut(s) 445, 622
Hpy188I TCNGA 2 cut(s) 236, 380
Hpy188III TCNNGA 1 cut(s) 296
Hpy99I CGWCG 1 cut(s) 259
HpyAV CCTTC 3 cut(s) 20, 40, 340
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4V TGCA 3 cut(s) 4, 107, 220
HpyF10VI GCNNNNNNNGC 1 cut(s) 318
HpyF3I CTNAG 1 cut(s) 276
Hsp92II CATG 1 cut(s) 650
Kzo9I GATC 3 cut(s) 113, 286, 620
LguI GCTCTTC 1 cut(s) 688
LmnI GCTCC 3 cut(s) 237, 506, 643
LpnPI CCDG 6 cut(s) 170, 176, 275, 320, 444, 573
MaeIII GTNAC 2 cut(s) 433, 649
MalI GATC 3 cut(s) 115, 288, 622
MboI GATC 3 cut(s) 113, 286, 620
MfeI CAATTG 1 cut(s) 510
MflI RGATCY 2 cut(s) 113, 286
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 7 cut(s) 82, 178, 215, 398, 510, 605, 613
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 8 cut(s) 55, 272, 285, 320, 323, 356, 387, 539
MseI TTAA 2 cut(s) 126, 594
MunI CAATTG 1 cut(s) 510
MvnI CGCG 1 cut(s) 254
MwoI GCNNNNNNNGC 1 cut(s) 318
NdeII GATC 3 cut(s) 113, 286, 620
NlaIII CATG 1 cut(s) 650
NlaIV GGNNCC 1 cut(s) 243
NmuCI GTSAC 2 cut(s) 433, 649
NspI RCATGY 1 cut(s) 650
PceI AGGCCT 1 cut(s) 634
PciSI GCTCTTC 1 cut(s) 688
PfeI GAWTC 1 cut(s) 225
PkrI GCNGC 2 cut(s) 311, 323
PspN4I GGNNCC 1 cut(s) 243
PsuI RGATCY 2 cut(s) 113, 286
SapI GCTCTTC 1 cut(s) 688
SaqAI TTAA 2 cut(s) 126, 594
SatI GCNGC 2 cut(s) 310, 322
Sau3AI GATC 3 cut(s) 113, 286, 620
SduI GDGCHC 1 cut(s) 246
SetI ASST 4 cut(s) 264, 270, 334, 550
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 7 cut(s) 82, 178, 215, 398, 510, 605, 613
SseBI AGGCCT 1 cut(s) 634
SsiI CCGC 5 cut(s) 309, 312, 321, 324, 360
StuI AGGCCT 1 cut(s) 634
TaaI ACNGT 1 cut(s) 100
TaqI TCGA 2 cut(s) 257, 623
TasI AATT 7 cut(s) 82, 178, 215, 398, 510, 605, 613
TauI GCSGC 2 cut(s) 312, 324
TfiI GAWTC 1 cut(s) 225
Tru1I TTAA 2 cut(s) 126, 594
Tru9I TTAA 2 cut(s) 126, 594
TseFI GTSAC 2 cut(s) 433, 649
Tsp45I GTSAC 2 cut(s) 433, 649
TspDTI ATGAA 3 cut(s) 22, 46, 518
XapI RAATTY 1 cut(s) 178
XceI RCATGY 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.