RLG00000026424
NAC Family

Nascent polypeptide-associated complex subunit alpha-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0020690
Physical Location & Seq
Reverse (-)
2951346 .. 2952985
1640 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026424

Sequence Viewer

Length: 684 bp
ATGAAACGGCTTCAATTCAAGCGTCCCAAAAAGCTCAAAACACCGGATCTGGAAGACGACGTAGAGGATGTCGTGAGGCTGATGAAGAGGAAACCTGGTCACTGGTACTGGGACGACAGGTGCTCCCCGAACTTCCGCCGCCCCCCCTGGATGACAGAGATTCCGTCCATCGAACAATCCATCAGGGAGGTCCCATCCACTGAACAATCCCTTGAGAACTCTCTGCAGAATAAGGAGGGGGATGAGGTCATGGTCGATGTTGGGAAGGACAACAAGAACGAGGATGAGGTTGCGGTCTTGGATGACAATTGCAAGGAAGATGAGTCTAAAGGTGGAAATGAGTCTTCAAATCAGAGCAGCAGTGAGAAGAAGAGTTGTAAGGCAATCTTGGAGCATGCGGTGTCATCCTACATCTATTCCACATATGGTGAGAAGTTGAGCTCTCAGATCAGTCAGAAGCTGACACAGGCTGCCCGGCAGGAAAAACCAGAACGTTTCAGAGCTGGTACTGGAGCTCAGGCATATAAAGAGCTGGAAGAGGTTGACGAACCTGATGTGGAACCTGCGGACATAGATTTTTTCATGACACAGGCGGGGTTATCAAGGAGCGAGATTGTCAAGGCTGTCAAGTCTGAGAGCGGACACATCGACATCGTCCGCGCTATCAAAGAGCTCACCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAC

Protein Analysis

228

Amino Acids

25.84

Weight (kDa)

5.03

Isoelectric Point (pI)

56.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020690)

Species Orthologous Gene IDs
rosa_laevigata RLG00000026424 RLG00000026428
rosa_roxburghii Rroxscaffold_4G00280400
rosa_samantha Rh1BG389000 Rh1CG402400 Rh1DG420200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 571
AccBSI CCGCTC 1 cut(s) 639
AccII CGCG 1 cut(s) 660
AciI CCGC 8 cut(s) 136, 139, 293, 398, 566, 593, 639, 658
AclI AACGTT 1 cut(s) 493
AclWI GGATC 1 cut(s) 54
AfaI GTAC 2 cut(s) 107, 508
AgsI TTSAA 3 cut(s) 14, 19, 348
AjnI CCWGG 2 cut(s) 94, 146
AluBI AGCT 7 cut(s) 34, 441, 460, 503, 515, 532, 673
AluI AGCT 7 cut(s) 34, 441, 460, 503, 515, 532, 673
Alw21I GWGCWC 4 cut(s) 125, 443, 517, 675
AlwI GGATC 1 cut(s) 54
AlwNI CAGNNNCTG 1 cut(s) 460
ApeKI GCWGC 2 cut(s) 357, 470
AspLEI GCGC 1 cut(s) 662
AspS9I GGNCC 1 cut(s) 190
AsuC2I CCSGG 1 cut(s) 475
AsuHPI GGTGA 2 cut(s) 440, 667
AvaII GGWCC 1 cut(s) 190
BanII GRGCYC 3 cut(s) 443, 517, 675
BbsI GAAGAC 2 cut(s) 60, 336
Bbv12I GWGCWC 4 cut(s) 125, 443, 517, 675
BbvI GCAGC 2 cut(s) 369, 457
BccI CCATC 3 cut(s) 176, 188, 202
BceAI ACGGC 1 cut(s) 23
BciT130I CCWGG 2 cut(s) 96, 148
BcnI CCSGG 1 cut(s) 475
BfmI CTRYAG 1 cut(s) 224
BfuAI ACCTGC 1 cut(s) 571
BisI GCNGC 3 cut(s) 139, 358, 471
BlsI GCNGC 3 cut(s) 140, 359, 472
Bme1390I CCNGG 3 cut(s) 96, 148, 475
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 2 cut(s) 192, 561
BmrFI CCNGG 3 cut(s) 96, 148, 475
BmrI ACTGGG 1 cut(s) 118
BmuI ACTGGG 1 cut(s) 118
BpiI GAAGAC 2 cut(s) 60, 336
BpmI CTGGAG 1 cut(s) 531
Bpu10I CCTNAGC 1 cut(s) 516
BpuEI CTTGAG 1 cut(s) 233
BpuMI CCSGG 1 cut(s) 475
BsaJI CCNNGG 1 cut(s) 146
BsaWI WCCGGW 1 cut(s) 43
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bse1I ACTGG 3 cut(s) 107, 113, 514
BseBI CCWGG 2 cut(s) 96, 148
BseDI CCNNGG 1 cut(s) 146
BseGI GGATG 7 cut(s) 73, 156, 194, 247, 289, 307, 404
BseMII CTCAG 3 cut(s) 458, 530, 624
BseNI ACTGG 3 cut(s) 107, 113, 514
BseXI GCAGC 2 cut(s) 369, 457
Bsh1236I CGCG 1 cut(s) 660
BsiHKAI GWGCWC 4 cut(s) 125, 443, 517, 675
BsiSI CCGG 2 cut(s) 44, 475
BslFI GGGAC 3 cut(s) 9, 125, 176
BsmFI GGGAC 3 cut(s) 9, 125, 176
Bsp1286I GDGCHC 4 cut(s) 125, 443, 517, 675
Bsp143I GATC 2 cut(s) 46, 447
BspACI CCGC 8 cut(s) 136, 139, 293, 398, 566, 593, 639, 658
BspCNI CTCAG 3 cut(s) 457, 529, 625
BspFNI CGCG 1 cut(s) 660
BspHI TCATGA 1 cut(s) 582
BspLI GGNNCC 2 cut(s) 192, 561
BspMAI CTGCAG 1 cut(s) 228
BspMI ACCTGC 1 cut(s) 571
BspPI GGATC 1 cut(s) 54
BsrBI CCGCTC 1 cut(s) 639
BsrI ACTGG 3 cut(s) 107, 113, 514
BssECI CCNNGG 1 cut(s) 146
BssMI GATC 2 cut(s) 46, 447
Bst2UI CCWGG 2 cut(s) 96, 148
Bst6I CTCTTC 3 cut(s) 80, 365, 531
BstC8I GCNNGC 1 cut(s) 396
BstDEI CTNAG 3 cut(s) 444, 516, 633
BstF5I GGATG 7 cut(s) 73, 156, 194, 247, 289, 307, 404
BstFNI CGCG 1 cut(s) 660
BstHHI GCGC 1 cut(s) 662
BstKTI GATC 2 cut(s) 49, 450
BstMBI GATC 2 cut(s) 46, 447
BstNI CCWGG 2 cut(s) 96, 148
BstNSI RCATGY 1 cut(s) 398
BstSCI CCNGG 3 cut(s) 94, 146, 473
BstSFI CTRYAG 1 cut(s) 224
BstUI CGCG 1 cut(s) 660
BstV1I GCAGC 2 cut(s) 369, 457
BstV2I GAAGAC 2 cut(s) 60, 336
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BtsCI GGATG 7 cut(s) 73, 156, 194, 247, 289, 307, 404
BtsI GCAGTG 1 cut(s) 367
BtsIMutI CAGTG 3 cut(s) 100, 198, 367
BveI ACCTGC 1 cut(s) 571
Cac8I GCNNGC 1 cut(s) 396
CaiI CAGNNNCTG 1 cut(s) 460
CciI TCATGA 1 cut(s) 582
CfoI GCGC 1 cut(s) 662
Cfr13I GGNCC 1 cut(s) 190
CseI GACGC 1 cut(s) 11
CsiI ACCWGGT 1 cut(s) 94
Csp6I GTAC 2 cut(s) 106, 507
CviAII CATG 3 cut(s) 250, 395, 583
CviQI GTAC 2 cut(s) 106, 507
DdeI CTNAG 3 cut(s) 444, 516, 633
DpnI GATC 2 cut(s) 48, 449
DpnII GATC 2 cut(s) 46, 447
Eam1104I CTCTTC 3 cut(s) 80, 365, 531
EarI CTCTTC 3 cut(s) 80, 365, 531
EciI GGCGGA 1 cut(s) 125
Ecl136II GAGCTC 3 cut(s) 441, 515, 673
Eco24I GRGCYC 3 cut(s) 443, 517, 675
Eco47I GGWCC 1 cut(s) 190
Eco53kI GAGCTC 3 cut(s) 441, 515, 673
EcoICRI GAGCTC 3 cut(s) 441, 515, 673
EcoO109I RGGNCCY 1 cut(s) 190
EcoRII CCWGG 2 cut(s) 94, 146
EcoT38I GRGCYC 3 cut(s) 443, 517, 675
FaeI CATG 3 cut(s) 253, 398, 586
FaiI YATR 8 cut(s) 251, 396, 424, 426, 523, 525, 572, 584
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FaqI GGGAC 3 cut(s) 9, 125, 176
FatI CATG 3 cut(s) 249, 394, 582
FauI CCCGC 1 cut(s) 586
FauNDI CATATG 1 cut(s) 424
Fnu4HI GCNGC 3 cut(s) 139, 358, 471
FokI GGATG 7 cut(s) 80, 163, 181, 254, 296, 314, 391
FriOI GRGCYC 3 cut(s) 443, 517, 675
Fsp4HI GCNGC 3 cut(s) 139, 358, 471
GlaI GCGC 1 cut(s) 661
GluI GCNGC 3 cut(s) 139, 358, 471
GsuI CTGGAG 1 cut(s) 531
HapII CCGG 2 cut(s) 44, 475
HgaI GACGC 1 cut(s) 11
HhaI GCGC 1 cut(s) 662
Hin1II CATG 3 cut(s) 253, 398, 586
Hin6I GCGC 1 cut(s) 660
HinP1I GCGC 1 cut(s) 660
HincII GTYRAC 1 cut(s) 544
HindII GTYRAC 1 cut(s) 544
HinfI GANTC 3 cut(s) 160, 323, 341
HpaII CCGG 2 cut(s) 44, 475
HphI GGTGA 2 cut(s) 440, 667
Hpy166II GTNNAC 1 cut(s) 544
Hpy188I TCNGA 5 cut(s) 354, 447, 456, 500, 634
Hpy188III TCNNGA 3 cut(s) 50, 73, 583
Hpy8I GTNNAC 1 cut(s) 544
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 1 cut(s) 259
HpyCH4IV ACGT 2 cut(s) 60, 493
HpyCH4V TGCA 2 cut(s) 226, 312
HpyF3I CTNAG 3 cut(s) 444, 516, 633
HpySE526I ACGT 2 cut(s) 60, 493
Hsp92II CATG 3 cut(s) 253, 398, 586
HspAI GCGC 1 cut(s) 660
Kzo9I GATC 2 cut(s) 46, 447
LmnI GCTCC 4 cut(s) 128, 391, 512, 606
Lsp1109I GCAGC 2 cut(s) 369, 457
MabI ACCWGGT 1 cut(s) 94
MaeII ACGT 2 cut(s) 60, 493
MaeIII GTNAC 1 cut(s) 98
MalI GATC 2 cut(s) 48, 449
MbiI CCGCTC 1 cut(s) 639
MboI GATC 2 cut(s) 46, 447
MboII GAAGA 7 cut(s) 65, 97, 329, 336, 379, 382, 548
MfeI CAATTG 1 cut(s) 307
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 4 cut(s) 125, 443, 517, 675
MluCI AATT 2 cut(s) 14, 307
MlyI GAGTC 2 cut(s) 332, 350
MnlI CCTC 9 cut(s) 58, 69, 81, 181, 229, 238, 274, 280, 532
MseI TTAA 1 cut(s) 682
MspI CCGG 2 cut(s) 44, 475
MspR9I CCNGG 3 cut(s) 96, 148, 475
MunI CAATTG 1 cut(s) 307
MvaI CCWGG 2 cut(s) 96, 148
MvnI CGCG 1 cut(s) 660
NciI CCSGG 1 cut(s) 475
NdeI CATATG 1 cut(s) 424
NdeII GATC 2 cut(s) 46, 447
NlaIII CATG 3 cut(s) 253, 398, 586
NlaIV GGNNCC 2 cut(s) 192, 561
NmuCI GTSAC 1 cut(s) 98
NspI RCATGY 1 cut(s) 398
PaeI GCATGC 1 cut(s) 398
PagI TCATGA 1 cut(s) 582
PfeI GAWTC 1 cut(s) 160
PflFI GACNNNGTC 1 cut(s) 653
PkrI GCNGC 3 cut(s) 140, 359, 472
PleI GAGTC 2 cut(s) 331, 349
PpsI GAGTC 2 cut(s) 331, 349
PpuMI RGGWCCY 1 cut(s) 190
Psp124BI GAGCTC 3 cut(s) 443, 517, 675
Psp1406I AACGTT 1 cut(s) 493
Psp5II RGGWCCY 1 cut(s) 190
Psp6I CCWGG 2 cut(s) 94, 146
PspGI CCWGG 2 cut(s) 94, 146
PspN4I GGNNCC 2 cut(s) 192, 561
PspPI GGNCC 1 cut(s) 190
PspPPI RGGWCCY 1 cut(s) 190
PstI CTGCAG 1 cut(s) 228
PstNI CAGNNNCTG 1 cut(s) 460
PsuI RGATCY 1 cut(s) 46
PsyI GACNNNGTC 1 cut(s) 653
RsaI GTAC 2 cut(s) 107, 508
RsaNI GTAC 2 cut(s) 106, 507
SacI GAGCTC 3 cut(s) 443, 517, 675
SaqAI TTAA 1 cut(s) 682
SatI GCNGC 3 cut(s) 139, 358, 471
Sau3AI GATC 2 cut(s) 46, 447
Sau96I GGNCC 1 cut(s) 190
SchI GAGTC 2 cut(s) 332, 350
ScrFI CCNGG 3 cut(s) 96, 148, 475
SduI GDGCHC 4 cut(s) 125, 443, 517, 675
SexAI ACCWGGT 1 cut(s) 94
SfcI CTRYAG 1 cut(s) 224
SinI GGWCC 1 cut(s) 190
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
SphI GCATGC 1 cut(s) 398
Sse9I AATT 2 cut(s) 14, 307
SsiI CCGC 8 cut(s) 136, 139, 293, 398, 566, 593, 639, 658
SstI GAGCTC 3 cut(s) 443, 517, 675
StyD4I CCNGG 3 cut(s) 94, 146, 473
TaiI ACGT 2 cut(s) 63, 496
TaqI TCGA 3 cut(s) 171, 255, 648
TasI AATT 2 cut(s) 14, 307
TauI GCSGC 1 cut(s) 141
TfiI GAWTC 1 cut(s) 160
Tru1I TTAA 1 cut(s) 682
Tru9I TTAA 1 cut(s) 682
TscAI CASTG 3 cut(s) 107, 205, 367
TseFI GTSAC 1 cut(s) 98
TseI GCWGC 2 cut(s) 357, 470
Tsp45I GTSAC 1 cut(s) 98
TspDTI ATGAA 3 cut(s) 17, 98, 571
TspGWI ACGGA 1 cut(s) 153
TspRI CASTG 3 cut(s) 107, 205, 367
Tth111I GACNNNGTC 1 cut(s) 653
VpaK11BI GGWCC 1 cut(s) 190
XceI RCATGY 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.