Rh1CG402400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0020690
Physical Location & Seq
Forward (+)
66803848 .. 66805009
1162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG402400.1

Sequence Viewer

Length: 219 bp
ATGGCAAGGAAGATGAGGCTAAAGAGTTTGTCATCCAACATCGATTTCACATATGTTGAGGAGTTGAGATCTCAGATCAGTCAGAAGCTGACACAGGCTGCCCAGCGGGGAAAACCAGAACGTTTCGAAGCTGGTACTGGAGCTCAGGCATATAAAGAGCTGGAAGAGGTTGATGAGCCTGCGGACATTGATTTTTTCATGACACAGGCCGGGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.17

Weight (kDa)

5.05

Isoelectric Point (pI)

37.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020690)

Species Orthologous Gene IDs
rosa_laevigata RLG00000026424 RLG00000026428
rosa_roxburghii Rroxscaffold_4G00280400
rosa_samantha Rh1BG389000 Rh1CG402400 Rh1DG420200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 217
AciI CCGC 2 cut(s) 106, 182
AclI AACGTT 1 cut(s) 121
AfaI GTAC 1 cut(s) 136
AjuI GAANNNNNNNTTGG 2 cut(s) 29, 61
AluBI AGCT 4 cut(s) 88, 131, 143, 160
AluI AGCT 4 cut(s) 88, 131, 143, 160
Alw21I GWGCWC 1 cut(s) 145
AlwNI CAGNNNCTG 1 cut(s) 88
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 1 cut(s) 98
AsuC2I CCSGG 1 cut(s) 211
AsuII TTCGAA 1 cut(s) 126
BanII GRGCYC 1 cut(s) 145
Bbv12I GWGCWC 1 cut(s) 145
BbvI GCAGC 1 cut(s) 85
BcnI CCSGG 1 cut(s) 211
BglII AGATCT 1 cut(s) 68
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
Bme1390I CCNGG 1 cut(s) 211
BmrFI CCNGG 1 cut(s) 211
BpmI CTGGAG 1 cut(s) 159
Bpu10I CCTNAGC 1 cut(s) 144
Bpu14I TTCGAA 1 cut(s) 126
BpuMI CCSGG 1 cut(s) 211
Bsa29I ATCGAT 1 cut(s) 42
Bse1I ACTGG 1 cut(s) 142
BseCI ATCGAT 1 cut(s) 42
BseGI GGATG 1 cut(s) 32
BseMII CTCAG 2 cut(s) 86, 158
BseNI ACTGG 1 cut(s) 142
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 1 cut(s) 85
BseYI CCCAGC 1 cut(s) 102
BshFI GGCC 1 cut(s) 209
BshVI ATCGAT 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 145
BsiSI CCGG 1 cut(s) 210
BsnI GGCC 1 cut(s) 209
Bsp119I TTCGAA 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 145
Bsp143I GATC 2 cut(s) 68, 75
BspACI CCGC 2 cut(s) 106, 182
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 2 cut(s) 85, 157
BspDI ATCGAT 1 cut(s) 42
BspHI TCATGA 1 cut(s) 198
BspT104I TTCGAA 1 cut(s) 126
BsrI ACTGG 1 cut(s) 142
BssMI GATC 2 cut(s) 68, 75
Bst6I CTCTTC 1 cut(s) 159
BstBI TTCGAA 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 2 cut(s) 72, 144
BstF5I GGATG 1 cut(s) 32
BstKTI GATC 2 cut(s) 71, 78
BstMBI GATC 2 cut(s) 68, 75
BstSCI CCNGG 1 cut(s) 209
BstV1I GCAGC 1 cut(s) 85
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
Bsu15I ATCGAT 1 cut(s) 42
BsuRI GGCC 1 cut(s) 209
BsuTUI ATCGAT 1 cut(s) 42
BtsCI GGATG 1 cut(s) 32
Cac8I GCNNGC 1 cut(s) 180
CaiI CAGNNNCTG 1 cut(s) 88
CciI TCATGA 1 cut(s) 198
ClaI ATCGAT 1 cut(s) 42
Csp6I GTAC 1 cut(s) 135
CviAII CATG 1 cut(s) 199
CviJI RGCY 8 cut(s) 19, 88, 98, 131, 143, 160, 178, 209
CviKI_1 RGCY 8 cut(s) 19, 88, 98, 131, 143, 160, 178, 209
CviQI GTAC 1 cut(s) 135
DdeI CTNAG 2 cut(s) 72, 144
DpnI GATC 2 cut(s) 70, 77
DpnII GATC 2 cut(s) 68, 75
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Ecl136II GAGCTC 1 cut(s) 143
Eco24I GRGCYC 1 cut(s) 145
Eco53kI GAGCTC 1 cut(s) 143
EcoICRI GAGCTC 1 cut(s) 143
EcoT38I GRGCYC 1 cut(s) 145
FaeI CATG 1 cut(s) 202
FaiI YATR 6 cut(s) 52, 54, 151, 153, 200, 217
FatI CATG 1 cut(s) 198
FauI CCCGC 1 cut(s) 99
FauNDI CATATG 1 cut(s) 52
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 1 cut(s) 19
FriOI GRGCYC 1 cut(s) 145
Fsp4HI GCNGC 1 cut(s) 99
GluI GCNGC 1 cut(s) 99
GsaI CCCAGC 1 cut(s) 106
GsuI CTGGAG 1 cut(s) 159
HaeIII GGCC 1 cut(s) 209
HapII CCGG 1 cut(s) 210
Hin1II CATG 1 cut(s) 202
HpaII CCGG 1 cut(s) 210
Hpy188I TCNGA 2 cut(s) 75, 84
Hpy188III TCNNGA 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 121
HpyF3I CTNAG 2 cut(s) 72, 144
HpySE526I ACGT 1 cut(s) 121
Hsp92II CATG 1 cut(s) 202
Kzo9I GATC 2 cut(s) 68, 75
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 9 cut(s) 80, 116, 117, 123, 129, 131, 146, 191, 192
Lsp1109I GCAGC 1 cut(s) 85
MaeII ACGT 1 cut(s) 121
MalI GATC 2 cut(s) 70, 77
MboI GATC 2 cut(s) 68, 75
MboII GAAGA 2 cut(s) 22, 176
MflI RGATCY 1 cut(s) 68
MhlI GDGCHC 1 cut(s) 145
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 3 cut(s) 9, 52, 160
MspA1I CMGCKG 1 cut(s) 106
MspI CCGG 1 cut(s) 210
MspR9I CCNGG 1 cut(s) 211
NciI CCSGG 1 cut(s) 211
NdeI CATATG 1 cut(s) 52
NdeII GATC 2 cut(s) 68, 75
NlaIII CATG 1 cut(s) 202
NspV TTCGAA 1 cut(s) 126
PagI TCATGA 1 cut(s) 198
PkrI GCNGC 1 cut(s) 100
PsiI TTATAA 1 cut(s) 217
Psp124BI GAGCTC 1 cut(s) 145
Psp1406I AACGTT 1 cut(s) 121
PspFI CCCAGC 1 cut(s) 102
PstNI CAGNNNCTG 1 cut(s) 88
PsuI RGATCY 1 cut(s) 68
RsaI GTAC 1 cut(s) 136
RsaNI GTAC 1 cut(s) 135
SacI GAGCTC 1 cut(s) 145
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 2 cut(s) 68, 75
ScrFI CCNGG 1 cut(s) 211
SduI GDGCHC 1 cut(s) 145
SetI ASST 6 cut(s) 90, 124, 133, 145, 162, 171
SfuI TTCGAA 1 cut(s) 126
SsiI CCGC 2 cut(s) 106, 182
SstI GAGCTC 1 cut(s) 145
StyD4I CCNGG 1 cut(s) 209
TaiI ACGT 1 cut(s) 124
TaqI TCGA 2 cut(s) 42, 126
TseI GCWGC 1 cut(s) 98
TspDTI ATGAA 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.