RLG00000026428

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0020690
Physical Location & Seq
Reverse (-)
2984711 .. 2989378
4668 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026428

Sequence Viewer

Length: 951 bp
ATGAAACGACATAAACCTAAAAAGTTCAAAATACCGGATCTGGAAGATGACGTAGAGGAGATCGTGAGGCTGAAGAAGAGGAAACCTGTCGTAAAAGAAATCGATGAAGATGGCTGTCCCGTCTGCAGTGACAAAATCCCACTGGGCGTAGTTATTGATCCTGTATATGACGAACCGCCTATAGGTCACTGGTACTGGGACGGCAGGTGCTCGAAGAACTGCCACCGGCCCCCGTGGATAGTTGAGATTCGGTCCATCGAACAATCCATCAGGGAGGTCCCGTCCACTGAACAATCCCTCGAGAACTCTCTGAAGAACAAGGAAGAGGATGAGGCAGATCGGAATGATTGTAAGCATGAAATGTGGGTTTCTCCCGAGTGTCTGAGCAAAAGTGAAGGACAGAAGCAGAACTGGAGACAAGATTTTCCTGAGGTGATGAGGGAAGGACAGAAGGAAGCAGTCCAAGATAAGCAAAAGAAAAATTCAAATGAGCGAGACAAAATCATCGAAATTAGCATGCCACCAGAGGTGTCTGAAAATGATGAAATAATCAACTCCCTAGTACCAGAGTCCAGAGTGGTGGTACCACCGGATCAACCAGATCCAATTTGGATCTGTATCGTCCACCAAATCGGAAAACCCACCCCTGGTCAGGTCCTTGATATTCCCTCGTCGGAAAACCCACCGCCACTGCGTCCGACTGACCGCTCCTTTGACCCCAGAGCCCGCCGCCAGCCATCAGGAGCCCACCGATCTCCCTCGCGATCGCCCAAGACTCCAGACATAGATCGTAACCGATCCATTCAGCTTGAAGTTGACCGCCCAATCATCCATTCCCAACGAAGGGACGCGCCGCCGGACGGAGCATCAGTCAGCCACGGGAGTACCAGACGCGTTCTCTCGTCTTTGTTTCGCACCCAGTCGATCTCTCTTCTTTCGATTCTCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

317

Amino Acids

36.3

Weight (kDa)

6.13

Isoelectric Point (pI)

71.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020690)

Species Orthologous Gene IDs
rosa_laevigata RLG00000026424 RLG00000026428
rosa_roxburghii Rroxscaffold_4G00280400
rosa_samantha Rh1BG389000 Rh1CG402400 Rh1DG420200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 195
Acc36I ACCTGC 1 cut(s) 195
Acc65I GGTACC 1 cut(s) 583
AccB1I GGYRCC 1 cut(s) 583
AccBSI CCGCTC 1 cut(s) 708
AccII CGCG 3 cut(s) 763, 851, 894
AciI CCGC 7 cut(s) 176, 686, 706, 727, 730, 820, 854
AclWI GGATC 6 cut(s) 45, 152, 596, 600, 620, 792
AcsI RAATTY 1 cut(s) 481
AcuI CTGAAG 2 cut(s) 92, 332
AfaI GTAC 4 cut(s) 194, 564, 585, 886
AfiI CCNNNNNNNGG 6 cut(s) 182, 647, 652, 843, 844, 860
AflIII ACRYGT 1 cut(s) 892
AgsI TTSAA 3 cut(s) 28, 486, 812
AjnI CCWGG 1 cut(s) 646
AjuI GAANNNNNNNTTGG 2 cut(s) 817, 849
AluBI AGCT 1 cut(s) 808
AluI AGCT 1 cut(s) 808
Alw21I GWGCWC 1 cut(s) 212
Alw26I GTCTC 2 cut(s) 409, 489
AlwI GGATC 6 cut(s) 45, 152, 596, 600, 620, 792
Ama87I CYCGRG 2 cut(s) 299, 374
AoxI GGCC 1 cut(s) 227
ApoI RAATTY 1 cut(s) 481
ArsI GACNNNNNNTTYG 2 cut(s) 695, 727
AsiSI GCGATCGC 1 cut(s) 767
Asp718I GGTACC 1 cut(s) 583
AspLEI GCGC 1 cut(s) 853
AspS9I GGNCC 4 cut(s) 228, 252, 277, 655
AsuHPI GGTGA 1 cut(s) 445
AvaI CYCGRG 2 cut(s) 299, 374
AvaII GGWCC 3 cut(s) 252, 277, 655
AxyI CCTNAGG 1 cut(s) 429
BaeI ACNNNNGTAYC 2 cut(s) 868, 901
BanI GGYRCC 1 cut(s) 583
BanII GRGCYC 2 cut(s) 727, 748
Bbv12I GWGCWC 1 cut(s) 212
BccI CCATC 4 cut(s) 104, 263, 275, 745
BceAI ACGGC 1 cut(s) 217
BciT130I CCWGG 1 cut(s) 648
BcoDI GTCTC 2 cut(s) 409, 489
BfaI CTAG 1 cut(s) 560
BfmI CTRYAG 2 cut(s) 124, 180
BfuAI ACCTGC 1 cut(s) 195
BisI GCNGC 2 cut(s) 730, 854
BlsI GCNGC 2 cut(s) 731, 855
Bme1390I CCNGG 1 cut(s) 648
Bme18I GGWCC 3 cut(s) 252, 277, 655
BmeT110I CYCGRG 2 cut(s) 299, 374
BmgT120I GGNCC 4 cut(s) 228, 252, 277, 655
BmiI GGNNCC 4 cut(s) 230, 279, 585, 745
BmrFI CCNGG 1 cut(s) 648
BmrI ACTGGG 3 cut(s) 152, 205, 913
BmsI GCATC 1 cut(s) 875
BmuI ACTGGG 3 cut(s) 152, 205, 913
BpmI CTGGAG 2 cut(s) 433, 762
Bsa29I ATCGAT 1 cut(s) 102
BsaBI GATNNNNATC 1 cut(s) 617
BsaJI CCNNGG 3 cut(s) 233, 646, 877
BsaWI WCCGGW 2 cut(s) 34, 589
BsaXI ACNNNNNCTCC 4 cut(s) 266, 296, 855, 885
Bsc4I CCNNNNNNNGG 6 cut(s) 182, 647, 652, 843, 844, 860
Bse118I RCCGGY 1 cut(s) 225
Bse1I ACTGG 5 cut(s) 147, 194, 200, 416, 919
Bse21I CCTNAGG 1 cut(s) 429
Bse8I GATNNNNATC 1 cut(s) 617
BseBI CCWGG 1 cut(s) 648
BseCI ATCGAT 1 cut(s) 102
BseDI CCNNGG 3 cut(s) 233, 646, 877
BseGI GGATG 2 cut(s) 334, 828
BseJI GATNNNNATC 1 cut(s) 617
BseLI CCNNNNNNNGG 6 cut(s) 182, 647, 652, 843, 844, 860
BseMII CTCAG 2 cut(s) 374, 420
BseNI ACTGG 5 cut(s) 147, 194, 200, 416, 919
BseRI GAGGAG 1 cut(s) 71
Bsh1236I CGCG 3 cut(s) 763, 851, 894
Bsh1285I CGRYCG 1 cut(s) 767
BshFI GGCC 1 cut(s) 229
BshNI GGYRCC 1 cut(s) 583
BshVI ATCGAT 1 cut(s) 102
BsiEI CGRYCG 1 cut(s) 767
BsiHKAI GWGCWC 1 cut(s) 212
BsiHKCI CYCGRG 2 cut(s) 299, 374
BsiSI CCGG 4 cut(s) 35, 226, 590, 857
BslFI GGGAC 4 cut(s) 102, 212, 263, 860
BslI CCNNNNNNNGG 6 cut(s) 182, 647, 652, 843, 844, 860
BsmAI GTCTC 2 cut(s) 409, 489
BsmFI GGGAC 4 cut(s) 102, 212, 263, 860
BsnI GGCC 1 cut(s) 229
BsoBI CYCGRG 2 cut(s) 299, 374
Bsp1286I GDGCHC 3 cut(s) 212, 727, 748
Bsp68I TCGCGA 1 cut(s) 763
BspACI CCGC 7 cut(s) 176, 686, 706, 727, 730, 820, 854
BspANI GGCC 1 cut(s) 229
BspCNI CTCAG 2 cut(s) 375, 421
BspDI ATCGAT 1 cut(s) 102
BspFNI CGCG 3 cut(s) 763, 851, 894
BspLI GGNNCC 4 cut(s) 230, 279, 585, 745
BspMAI CTGCAG 1 cut(s) 128
BspMI ACCTGC 1 cut(s) 195
BspPI GGATC 6 cut(s) 45, 152, 596, 600, 620, 792
BspT107I GGYRCC 1 cut(s) 583
BsrBI CCGCTC 1 cut(s) 708
BsrFI RCCGGY 1 cut(s) 225
BsrI ACTGG 5 cut(s) 147, 194, 200, 416, 919
BssAI RCCGGY 1 cut(s) 225
BssECI CCNNGG 3 cut(s) 233, 646, 877
Bst2UI CCWGG 1 cut(s) 648
Bst6I CTCTTC 3 cut(s) 71, 318, 936
BstC8I GCNNGC 3 cut(s) 518, 727, 734
BstDEI CTNAG 2 cut(s) 383, 429
BstDSI CCRYGG 2 cut(s) 233, 877
BstF5I GGATG 2 cut(s) 334, 828
BstFNI CGCG 3 cut(s) 763, 851, 894
BstHHI GCGC 1 cut(s) 853
BstMAI GTCTC 2 cut(s) 409, 489
BstMCI CGRYCG 1 cut(s) 767
BstNI CCWGG 1 cut(s) 648
BstNSI RCATGY 1 cut(s) 520
BstSCI CCNGG 1 cut(s) 646
BstSFI CTRYAG 2 cut(s) 124, 180
BstUI CGCG 3 cut(s) 763, 851, 894
BstX2I RGATCY 3 cut(s) 37, 601, 612
BstXI CCANNNNNNTGG 1 cut(s) 580
BstYI RGATCY 3 cut(s) 37, 601, 612
Bsu15I ATCGAT 1 cut(s) 102
Bsu36I CCTNAGG 1 cut(s) 429
BsuRI GGCC 1 cut(s) 229
BsuTUI ATCGAT 1 cut(s) 102
BtgI CCRYGG 2 cut(s) 233, 877
BtsCI GGATG 2 cut(s) 334, 828
BtsI GCAGTG 2 cut(s) 133, 689
BtsIMutI CAGTG 5 cut(s) 133, 140, 187, 285, 689
BtuMI TCGCGA 1 cut(s) 763
BveI ACCTGC 1 cut(s) 195
Cac8I GCNNGC 3 cut(s) 518, 727, 734
CfoI GCGC 1 cut(s) 853
Cfr10I RCCGGY 1 cut(s) 225
Cfr13I GGNCC 4 cut(s) 228, 252, 277, 655
ClaI ATCGAT 1 cut(s) 102
CseI GACGC 3 cut(s) 683, 857, 900
Csp6I GTAC 4 cut(s) 193, 563, 584, 885
CviAII CATG 2 cut(s) 356, 517
CviJI RGCY 8 cut(s) 70, 114, 229, 725, 736, 746, 808, 876
CviKI_1 RGCY 8 cut(s) 70, 114, 229, 725, 736, 746, 808, 876
CviQI GTAC 4 cut(s) 193, 563, 584, 885
DdeI CTNAG 2 cut(s) 383, 429
Eam1104I CTCTTC 3 cut(s) 71, 318, 936
EarI CTCTTC 3 cut(s) 71, 318, 936
Eco24I GRGCYC 2 cut(s) 727, 748
Eco47I GGWCC 3 cut(s) 252, 277, 655
Eco57I CTGAAG 2 cut(s) 92, 332
Eco81I CCTNAGG 1 cut(s) 429
Eco88I CYCGRG 2 cut(s) 299, 374
EcoO109I RGGNCCY 2 cut(s) 277, 655
EcoRII CCWGG 1 cut(s) 646
EcoT38I GRGCYC 2 cut(s) 727, 748
FaeI CATG 2 cut(s) 359, 520
FaiI YATR 7 cut(s) 12, 166, 168, 182, 357, 518, 785
FaqI GGGAC 4 cut(s) 102, 212, 263, 860
FatI CATG 2 cut(s) 355, 516
FauI CCCGC 1 cut(s) 734
Fnu4HI GCNGC 2 cut(s) 730, 854
FokI GGATG 2 cut(s) 341, 815
FriOI GRGCYC 2 cut(s) 727, 748
Fsp4HI GCNGC 2 cut(s) 730, 854
FspBI CTAG 1 cut(s) 560
GlaI GCGC 1 cut(s) 852
GluI GCNGC 2 cut(s) 730, 854
GsuI CTGGAG 2 cut(s) 433, 762
HaeIII GGCC 1 cut(s) 229
HapII CCGG 4 cut(s) 35, 226, 590, 857
HgaI GACGC 3 cut(s) 683, 857, 900
HhaI GCGC 1 cut(s) 853
Hin1II CATG 2 cut(s) 359, 520
Hin6I GCGC 1 cut(s) 851
HinP1I GCGC 1 cut(s) 851
HincII GTYRAC 1 cut(s) 817
HindII GTYRAC 1 cut(s) 817
HinfI GANTC 4 cut(s) 247, 569, 775, 940
HpaII CCGG 4 cut(s) 35, 226, 590, 857
HphI GGTGA 1 cut(s) 445
Hpy166II GTNNAC 3 cut(s) 285, 625, 817
Hpy188I TCNGA 7 cut(s) 312, 342, 384, 535, 635, 676, 699
Hpy188III TCNNGA 9 cut(s) 41, 64, 301, 374, 428, 573, 741, 762, 779
Hpy8I GTNNAC 3 cut(s) 285, 625, 817
Hpy99I CGWCG 1 cut(s) 676
HpyAV CCTTC 4 cut(s) 389, 437, 445, 837
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 1 cut(s) 126
HpyF3I CTNAG 2 cut(s) 383, 429
HpySE526I ACGT 1 cut(s) 51
Hsp92II CATG 2 cut(s) 359, 520
HspAI GCGC 1 cut(s) 851
KpnI GGTACC 1 cut(s) 587
LmnI GCTCC 3 cut(s) 713, 743, 863
LweI GCATC 1 cut(s) 875
MaeI CTAG 1 cut(s) 560
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 3 cut(s) 128, 185, 791
MbiI CCGCTC 1 cut(s) 708
MboII GAAGA 8 cut(s) 56, 85, 88, 119, 226, 325, 335, 923
MflI RGATCY 3 cut(s) 37, 601, 612
MhlI GDGCHC 3 cut(s) 212, 727, 748
MluCI AATT 3 cut(s) 481, 510, 606
MluI ACGCGT 1 cut(s) 892
MlyI GAGTC 2 cut(s) 578, 769
MmeI TCCRAC 2 cut(s) 654, 722
MspI CCGG 4 cut(s) 35, 226, 590, 857
MspR9I CCNGG 1 cut(s) 648
MvaI CCWGG 1 cut(s) 648
MvnI CGCG 3 cut(s) 763, 851, 894
NlaIII CATG 2 cut(s) 359, 520
NlaIV GGNNCC 4 cut(s) 230, 279, 585, 745
NmuCI GTSAC 2 cut(s) 128, 185
NruI TCGCGA 1 cut(s) 763
NspI RCATGY 1 cut(s) 520
PaeI GCATGC 1 cut(s) 520
PaeR7I CTCGAG 1 cut(s) 299
PaqCI CACCTGC 1 cut(s) 195
PfeI GAWTC 2 cut(s) 247, 940
PkrI GCNGC 2 cut(s) 731, 855
Ple19I CGATCG 1 cut(s) 767
PleI GAGTC 2 cut(s) 577, 769
PpsI GAGTC 2 cut(s) 577, 769
PpuMI RGGWCCY 2 cut(s) 277, 655
Psp5II RGGWCCY 2 cut(s) 277, 655
Psp6I CCWGG 1 cut(s) 646
PspGI CCWGG 1 cut(s) 646
PspN4I GGNNCC 4 cut(s) 230, 279, 585, 745
PspPI GGNCC 4 cut(s) 228, 252, 277, 655
PspPPI RGGWCCY 2 cut(s) 277, 655
PstI CTGCAG 1 cut(s) 128
PsuI RGATCY 3 cut(s) 37, 601, 612
PvuI CGATCG 1 cut(s) 767
RgaI GCGATCGC 1 cut(s) 767
RruI TCGCGA 1 cut(s) 763
RsaI GTAC 4 cut(s) 194, 564, 585, 886
RsaNI GTAC 4 cut(s) 193, 563, 584, 885
SatI GCNGC 2 cut(s) 730, 854
Sau96I GGNCC 4 cut(s) 228, 252, 277, 655
SchI GAGTC 2 cut(s) 578, 769
ScrFI CCNGG 1 cut(s) 648
SduI GDGCHC 3 cut(s) 212, 727, 748
SfaAI GCGATCGC 1 cut(s) 767
SfaNI GCATC 1 cut(s) 875
SfcI CTRYAG 2 cut(s) 124, 180
Sfr274I CTCGAG 1 cut(s) 299
SgfI GCGATCGC 1 cut(s) 767
SinI GGWCC 3 cut(s) 252, 277, 655
SlaI CTCGAG 1 cut(s) 299
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
SphI GCATGC 1 cut(s) 520
Sse9I AATT 3 cut(s) 481, 510, 606
SsiI CCGC 7 cut(s) 176, 686, 706, 727, 730, 820, 854
SspMI CTAG 1 cut(s) 560
StyD4I CCNGG 1 cut(s) 646
TaiI ACGT 1 cut(s) 54
TaqI TCGA 7 cut(s) 102, 212, 258, 300, 507, 923, 938
TaqII GACCGA 1 cut(s) 240
TasI AATT 3 cut(s) 481, 510, 606
TauI GCSGC 2 cut(s) 732, 856
TfiI GAWTC 2 cut(s) 247, 940
TscAI CASTG 5 cut(s) 133, 147, 194, 292, 696
TseFI GTSAC 2 cut(s) 128, 185
Tsp45I GTSAC 2 cut(s) 128, 185
TspDTI ATGAA 4 cut(s) 17, 120, 372, 558
TspGWI ACGGA 1 cut(s) 876
TspRI CASTG 5 cut(s) 133, 147, 194, 292, 696
VpaK11BI GGWCC 3 cut(s) 252, 277, 655
XapI RAATTY 1 cut(s) 481
XceI RCATGY 1 cut(s) 520
XcmI CCANNNNNNNNNTGG 1 cut(s) 606
XhoI CTCGAG 1 cut(s) 299
XspI CTAG 1 cut(s) 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.