RLG00000026499

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0018878
Physical Location & Seq
Forward (+)
3418821 .. 3419264
444 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026499

Sequence Viewer

Length: 444 bp
ATGGCTAAATGGATCAATTCACAAGCCGCGTTCGTGTTTGAGTCACGACATGGCCCAATGTACTATAACAAATTGAGCTTGGCCCGATCTGTAAGCCCAAATAATAGTAATACCCACCAAACCATTCTGATCAACGGCCCAAAAAGCACAAAAACGAAAACGCTGCGTTTGGTCGATGTCTCCTTAACAAACCTTCGTCCACTGCGTTTCTTCATTCTACAAGTTCTTCAAGCTTTGCACCTATCGGAAACAATGGACGACAAGGCGTCGGAGATGAAGAACAGCGAGAAGAAGAAGATATTGTCTGCGTGCGACGTTGAGGCCCTGAAGAAATGCTTGGAGGAGAACAAGGGCGACTACGTCAAGTGCCAATCACAGATCGATGCCTTCAAGTCTTCTTGTGCTGTGAAGAAACCAAGCCCATCCGTAGAGTCTGTACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.46

Weight (kDa)

9.41

Isoelectric Point (pI)

58.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018878)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g29780
prunus_persica Prupe.2G297100_v2.0.a1
pyrus_communis pycom01g21430
rosa_chinensis RchiOBHm_Chr1g0377781
rosa_laevigata RLG00000026499
rosa_samantha Rh1BG381900 Rh1CG395800 Rh1DG412900
rosa_wichuraiana Rw1G037120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 29
AciI CCGC 1 cut(s) 27
AclWI GGATC 1 cut(s) 20
AcuI CTGAAG 1 cut(s) 347
AcyI GRCGYC 1 cut(s) 266
AfaI GTAC 2 cut(s) 62, 438
AgsI TTSAA 2 cut(s) 230, 391
AhdI GACNNNNNGTC 1 cut(s) 265
AjuI GAANNNNNNNTTGG 2 cut(s) 320, 352
AluBI AGCT 2 cut(s) 78, 233
AluI AGCT 2 cut(s) 78, 233
Alw26I GTCTC 1 cut(s) 184
AlwI GGATC 1 cut(s) 20
AoxI GGCC 4 cut(s) 52, 81, 136, 321
ApeKI GCWGC 1 cut(s) 163
AspS9I GGNCC 4 cut(s) 53, 82, 137, 322
BbsI GAAGAC 1 cut(s) 387
BbvI GCAGC 1 cut(s) 150
BccI CCATC 1 cut(s) 430
BceAI ACGGC 1 cut(s) 151
BcgI CGANNNNNNTGC 2 cut(s) 145, 179
BclI TGATCA 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 184
BisI GCNGC 2 cut(s) 27, 164
BlsI GCNGC 2 cut(s) 28, 165
BmeRI GACNNNNNGTC 1 cut(s) 265
BmgT120I GGNCC 4 cut(s) 53, 82, 137, 322
BmsI GCATC 1 cut(s) 373
BpiI GAAGAC 1 cut(s) 387
Bsa29I ATCGAT 1 cut(s) 381
BsaHI GRCGYC 1 cut(s) 266
BseCI ATCGAT 1 cut(s) 381
BseGI GGATG 1 cut(s) 422
BseRI GAGGAG 1 cut(s) 356
BseXI GCAGC 1 cut(s) 150
Bsh1236I CGCG 1 cut(s) 29
BshFI GGCC 4 cut(s) 54, 83, 138, 323
BshVI ATCGAT 1 cut(s) 381
BsmAI GTCTC 1 cut(s) 184
BsnI GGCC 4 cut(s) 54, 83, 138, 323
Bsp143I GATC 4 cut(s) 12, 86, 129, 378
BspACI CCGC 1 cut(s) 27
BspANI GGCC 4 cut(s) 54, 83, 138, 323
BspDI ATCGAT 1 cut(s) 381
BspFNI CGCG 1 cut(s) 29
BspPI GGATC 1 cut(s) 20
BssMI GATC 4 cut(s) 12, 86, 129, 378
BssNI GRCGYC 1 cut(s) 266
BstACI GRCGYC 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 310
BstF5I GGATG 1 cut(s) 422
BstFNI CGCG 1 cut(s) 29
BstKTI GATC 4 cut(s) 15, 89, 132, 381
BstMAI GTCTC 1 cut(s) 184
BstMBI GATC 4 cut(s) 12, 86, 129, 378
BstMWI GCNNNNNNNGC 1 cut(s) 144
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 150
BstV2I GAAGAC 1 cut(s) 387
Bsu15I ATCGAT 1 cut(s) 381
BsuRI GGCC 4 cut(s) 54, 83, 138, 323
BsuTUI ATCGAT 1 cut(s) 381
BtsCI GGATG 1 cut(s) 422
BtsI GCAGTG 1 cut(s) 200
BtsIMutI CAGTG 1 cut(s) 200
Cac8I GCNNGC 1 cut(s) 310
Cfr13I GGNCC 4 cut(s) 53, 82, 137, 322
ClaI ATCGAT 1 cut(s) 381
CseI GACGC 1 cut(s) 255
Csp6I GTAC 2 cut(s) 61, 437
CviAII CATG 1 cut(s) 50
CviQI GTAC 2 cut(s) 61, 437
DpnI GATC 4 cut(s) 14, 88, 131, 380
DpnII GATC 4 cut(s) 12, 86, 129, 378
DriI GACNNNNNGTC 1 cut(s) 265
Eam1105I GACNNNNNGTC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 347
EcoO109I RGGNCCY 1 cut(s) 322
FaeI CATG 1 cut(s) 53
FaiI YATR 2 cut(s) 51, 66
FalI AAGNNNNNCTT 2 cut(s) 320, 352
FatI CATG 1 cut(s) 49
FbaI TGATCA 1 cut(s) 129
Fnu4HI GCNGC 2 cut(s) 27, 164
FokI GGATG 1 cut(s) 409
Fsp4HI GCNGC 2 cut(s) 27, 164
GluI GCNGC 2 cut(s) 27, 164
HaeIII GGCC 4 cut(s) 54, 83, 138, 323
HgaI GACGC 1 cut(s) 255
Hin1I GRCGYC 1 cut(s) 266
Hin1II CATG 1 cut(s) 53
HindIII AAGCTT 1 cut(s) 231
HinfI GANTC 2 cut(s) 41, 431
Hpy166II GTNNAC 1 cut(s) 200
Hpy188I TCNGA 3 cut(s) 129, 247, 271
Hpy188III TCNNGA 1 cut(s) 45
Hpy8I GTNNAC 1 cut(s) 200
Hpy99I CGWCG 2 cut(s) 271, 317
HpyAV CCTTC 2 cut(s) 203, 397
HpyCH4IV ACGT 2 cut(s) 315, 360
HpyCH4V TGCA 1 cut(s) 238
HpyF10VI GCNNNNNNNGC 1 cut(s) 144
HpySE526I ACGT 2 cut(s) 315, 360
Hsp92I GRCGYC 1 cut(s) 266
Hsp92II CATG 1 cut(s) 53
Ksp22I TGATCA 1 cut(s) 129
Kzo9I GATC 4 cut(s) 12, 86, 129, 378
LpnPI CCDG 1 cut(s) 338
Lsp1109I GCAGC 1 cut(s) 150
LweI GCATC 1 cut(s) 373
MaeII ACGT 2 cut(s) 315, 360
MaeIII GTNAC 1 cut(s) 42
MalI GATC 4 cut(s) 14, 88, 131, 380
MboI GATC 4 cut(s) 12, 86, 129, 378
MboII GAAGA 9 cut(s) 202, 218, 289, 301, 304, 307, 340, 387, 421
MluCI AATT 2 cut(s) 16, 71
MlyI GAGTC 2 cut(s) 50, 440
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 2 cut(s) 313, 334
MseI TTAA 2 cut(s) 185, 442
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 1 cut(s) 144
NdeII GATC 4 cut(s) 12, 86, 129, 378
NlaIII CATG 1 cut(s) 53
NmuCI GTSAC 1 cut(s) 42
PcsI WCGNNNNNNNCGW 1 cut(s) 202
PflFI GACNNNGTC 1 cut(s) 359
PkrI GCNGC 2 cut(s) 28, 165
PleI GAGTC 2 cut(s) 49, 439
PpsI GAGTC 2 cut(s) 49, 439
PspPI GGNCC 4 cut(s) 53, 82, 137, 322
PsyI GACNNNGTC 1 cut(s) 359
RsaI GTAC 2 cut(s) 62, 438
RsaNI GTAC 2 cut(s) 61, 437
SaqAI TTAA 2 cut(s) 185, 442
SatI GCNGC 2 cut(s) 27, 164
Sau3AI GATC 4 cut(s) 12, 86, 129, 378
Sau96I GGNCC 4 cut(s) 53, 82, 137, 322
SchI GAGTC 2 cut(s) 50, 440
SetI ASST 7 cut(s) 80, 195, 235, 243, 318, 363, 442
SfaNI GCATC 1 cut(s) 373
Sse9I AATT 2 cut(s) 16, 71
SsiI CCGC 1 cut(s) 27
TaiI ACGT 2 cut(s) 318, 363
TaqI TCGA 2 cut(s) 174, 381
TasI AATT 2 cut(s) 16, 71
TatI WGTACW 1 cut(s) 60
TauI GCSGC 1 cut(s) 29
Tru1I TTAA 2 cut(s) 185, 442
Tru9I TTAA 2 cut(s) 185, 442
TscAI CASTG 1 cut(s) 207
TseFI GTSAC 1 cut(s) 42
TseI GCWGC 1 cut(s) 163
Tsp45I GTSAC 1 cut(s) 42
TspDTI ATGAA 2 cut(s) 202, 290
TspGWI ACGGA 1 cut(s) 415
TspRI CASTG 1 cut(s) 207
Tth111I GACNNNGTC 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.