Rw1G037120

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
64844089 .. 64844292
204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G037120.1

Sequence Viewer

Length: 204 bp
ATGGACGACAAGGCGTCGGAGACGAAGAGCAGCGAGAAGAAGAAGATACTGTCTGCGTGCGACGTTGAGGCCCTGAAGAAATGCTTGGAGGAGAACAAGGGCGACTACGTCAAGTGCCAATCACAGATCGATGCCTTCAAGTCTTCTTGTGCTGTGAAGAAACCAAGCCCATCCGTAGAGTCTGTACCTTCAGATCAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.35

Weight (kDa)

6.21

Isoelectric Point (pI)

68.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0018878)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g29780
prunus_persica Prupe.2G297100_v2.0.a1
pyrus_communis pycom01g21430
rosa_chinensis RchiOBHm_Chr1g0377781
rosa_laevigata RLG00000026499
rosa_samantha Rh1BG381900 Rh1CG395800 Rh1DG412900
rosa_wichuraiana Rw1G037120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 2 cut(s) 95, 174
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 1 cut(s) 186
AgsI TTSAA 1 cut(s) 139
AhdI GACNNNNNGTC 1 cut(s) 13
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
Alw26I GTCTC 1 cut(s) 14
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 42
BccI CCATC 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 14
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
BmeRI GACNNNNNGTC 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 70
BmsI GCATC 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 135
Bsa29I ATCGAT 1 cut(s) 129
BsaHI GRCGYC 1 cut(s) 14
BseCI ATCGAT 1 cut(s) 129
BseGI GGATG 1 cut(s) 170
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 1 cut(s) 42
BshFI GGCC 1 cut(s) 71
BshVI ATCGAT 1 cut(s) 129
BsmAI GTCTC 1 cut(s) 14
BsmBI CGTCTC 1 cut(s) 14
BsnI GGCC 1 cut(s) 71
Bsp143I GATC 2 cut(s) 126, 193
BspANI GGCC 1 cut(s) 71
BspDI ATCGAT 1 cut(s) 129
BspQI GCTCTTC 1 cut(s) 20
BssMI GATC 2 cut(s) 126, 193
BssNI GRCGYC 1 cut(s) 14
Bst4CI ACNGT 1 cut(s) 51
Bst6I CTCTTC 1 cut(s) 20
BstACI GRCGYC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 58
BstF5I GGATG 1 cut(s) 170
BstKTI GATC 2 cut(s) 129, 196
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 2 cut(s) 126, 193
BstV1I GCAGC 1 cut(s) 42
BstV2I GAAGAC 1 cut(s) 135
Bsu15I ATCGAT 1 cut(s) 129
BsuRI GGCC 1 cut(s) 71
BsuTUI ATCGAT 1 cut(s) 129
BtsCI GGATG 1 cut(s) 170
Cac8I GCNNGC 1 cut(s) 58
Cfr13I GGNCC 1 cut(s) 70
ClaI ATCGAT 1 cut(s) 129
CseI GACGC 1 cut(s) 3
Csp6I GTAC 1 cut(s) 185
CviJI RGCY 2 cut(s) 71, 168
CviKI_1 RGCY 2 cut(s) 71, 168
CviQI GTAC 1 cut(s) 185
DpnI GATC 2 cut(s) 128, 195
DpnII GATC 2 cut(s) 126, 193
DriI GACNNNNNGTC 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 20
Eam1105I GACNNNNNGTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 20
Eco57I CTGAAG 2 cut(s) 95, 174
EcoO109I RGGNCCY 1 cut(s) 70
Esp3I CGTCTC 1 cut(s) 14
FalI AAGNNNNNCTT 2 cut(s) 68, 100
Fnu4HI GCNGC 1 cut(s) 31
FokI GGATG 1 cut(s) 157
Fsp4HI GCNGC 1 cut(s) 31
GluI GCNGC 1 cut(s) 31
HaeIII GGCC 1 cut(s) 71
HgaI GACGC 1 cut(s) 3
Hin1I GRCGYC 1 cut(s) 14
HinfI GANTC 1 cut(s) 179
Hpy188I TCNGA 2 cut(s) 19, 193
Hpy99I CGWCG 2 cut(s) 19, 65
HpyAV CCTTC 2 cut(s) 145, 198
HpyCH4III ACNGT 1 cut(s) 51
HpyCH4IV ACGT 2 cut(s) 63, 108
HpySE526I ACGT 2 cut(s) 63, 108
Hsp92I GRCGYC 1 cut(s) 14
Kzo9I GATC 2 cut(s) 126, 193
LguI GCTCTTC 1 cut(s) 20
LpnPI CCDG 1 cut(s) 86
Lsp1109I GCAGC 1 cut(s) 42
LweI GCATC 1 cut(s) 121
MaeII ACGT 2 cut(s) 63, 108
MalI GATC 2 cut(s) 128, 195
MboI GATC 2 cut(s) 126, 193
MboII GAAGA 7 cut(s) 37, 49, 52, 55, 88, 135, 169
MluCI AATT 1 cut(s) 197
MlyI GAGTC 1 cut(s) 188
MnlI CCTC 2 cut(s) 61, 82
NdeII GATC 2 cut(s) 126, 193
PciSI GCTCTTC 1 cut(s) 20
PflFI GACNNNGTC 1 cut(s) 107
PkrI GCNGC 1 cut(s) 32
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
PspPI GGNCC 1 cut(s) 70
PsyI GACNNNGTC 1 cut(s) 107
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
SapI GCTCTTC 1 cut(s) 20
SatI GCNGC 1 cut(s) 31
Sau3AI GATC 2 cut(s) 126, 193
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 1 cut(s) 188
SetI ASST 3 cut(s) 66, 111, 190
SfaNI GCATC 1 cut(s) 121
Sse9I AATT 1 cut(s) 197
TaaI ACNGT 1 cut(s) 51
TaiI ACGT 2 cut(s) 66, 111
TaqI TCGA 1 cut(s) 129
TasI AATT 1 cut(s) 197
TseI GCWGC 1 cut(s) 30
TspGWI ACGGA 1 cut(s) 163
Tth111I GACNNNGTC 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.