Rh1BG381900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
51074551 .. 51074742
192 bp
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UTR
Exon/CDS
Intron
Rh1BG381900.1

Sequence Viewer

Length: 192 bp
ATGGACGACAAGGCGTCGGAGACGAAGAACAGCGAGAAGAAGAAGATATTGTCTGCGTGCGACGTTGAGGCCCTGAAGAAATGCTTGGAGGAGAACAAGGGCGACTACGTCAAGTGCCAATCTCAGATCGATGCCTTCAAGTCTTCTTGTGCTGTGAAGAAACCAAGCCCATCCGTAGAGTCTGTACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

6.89

Weight (kDa)

7.6

Isoelectric Point (pI)

67.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018878)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g29780
prunus_persica Prupe.2G297100_v2.0.a1
pyrus_communis pycom01g21430
rosa_chinensis RchiOBHm_Chr1g0377781
rosa_laevigata RLG00000026499
rosa_samantha Rh1BG381900 Rh1CG395800 Rh1DG412900
rosa_wichuraiana Rw1G037120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 95
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 1 cut(s) 186
AgsI TTSAA 1 cut(s) 139
AhdI GACNNNNNGTC 1 cut(s) 13
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
Alw26I GTCTC 1 cut(s) 14
AoxI GGCC 1 cut(s) 69
AspS9I GGNCC 1 cut(s) 70
BbsI GAAGAC 1 cut(s) 135
BccI CCATC 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 14
BmeRI GACNNNNNGTC 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 70
BmsI GCATC 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 135
Bsa29I ATCGAT 1 cut(s) 129
BsaHI GRCGYC 1 cut(s) 14
BseCI ATCGAT 1 cut(s) 129
BseGI GGATG 1 cut(s) 170
BseMII CTCAG 1 cut(s) 137
BseRI GAGGAG 1 cut(s) 104
BshFI GGCC 1 cut(s) 71
BshVI ATCGAT 1 cut(s) 129
BsmAI GTCTC 1 cut(s) 14
BsmBI CGTCTC 1 cut(s) 14
BsnI GGCC 1 cut(s) 71
Bsp143I GATC 1 cut(s) 126
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 136
BspDI ATCGAT 1 cut(s) 129
BssMI GATC 1 cut(s) 126
BssNI GRCGYC 1 cut(s) 14
BstACI GRCGYC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 170
BstKTI GATC 1 cut(s) 129
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 1 cut(s) 126
BstV2I GAAGAC 1 cut(s) 135
Bsu15I ATCGAT 1 cut(s) 129
BsuRI GGCC 1 cut(s) 71
BsuTUI ATCGAT 1 cut(s) 129
BtsCI GGATG 1 cut(s) 170
Cac8I GCNNGC 1 cut(s) 58
Cfr13I GGNCC 1 cut(s) 70
ClaI ATCGAT 1 cut(s) 129
CseI GACGC 1 cut(s) 3
Csp6I GTAC 1 cut(s) 185
CviJI RGCY 2 cut(s) 71, 168
CviKI_1 RGCY 2 cut(s) 71, 168
CviQI GTAC 1 cut(s) 185
DdeI CTNAG 1 cut(s) 123
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
DriI GACNNNNNGTC 1 cut(s) 13
Eam1105I GACNNNNNGTC 1 cut(s) 13
Eco57I CTGAAG 1 cut(s) 95
EcoO109I RGGNCCY 1 cut(s) 70
Esp3I CGTCTC 1 cut(s) 14
FalI AAGNNNNNCTT 2 cut(s) 68, 100
FokI GGATG 1 cut(s) 157
HaeIII GGCC 1 cut(s) 71
HgaI GACGC 1 cut(s) 3
Hin1I GRCGYC 1 cut(s) 14
HinfI GANTC 1 cut(s) 179
Hpy188I TCNGA 2 cut(s) 19, 126
Hpy99I CGWCG 2 cut(s) 19, 65
HpyAV CCTTC 1 cut(s) 145
HpyCH4IV ACGT 2 cut(s) 63, 108
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 2 cut(s) 63, 108
Hsp92I GRCGYC 1 cut(s) 14
Kzo9I GATC 1 cut(s) 126
LpnPI CCDG 1 cut(s) 86
LweI GCATC 1 cut(s) 121
MaeII ACGT 2 cut(s) 63, 108
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MboII GAAGA 7 cut(s) 37, 49, 52, 55, 88, 135, 169
MlyI GAGTC 1 cut(s) 188
MnlI CCTC 2 cut(s) 61, 82
MseI TTAA 1 cut(s) 190
NdeII GATC 1 cut(s) 126
PflFI GACNNNGTC 1 cut(s) 107
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
PspPI GGNCC 1 cut(s) 70
PsyI GACNNNGTC 1 cut(s) 107
RsaI GTAC 1 cut(s) 186
RsaNI GTAC 1 cut(s) 185
SaqAI TTAA 1 cut(s) 190
Sau3AI GATC 1 cut(s) 126
Sau96I GGNCC 1 cut(s) 70
SchI GAGTC 1 cut(s) 188
SetI ASST 3 cut(s) 66, 111, 190
SfaNI GCATC 1 cut(s) 121
TaiI ACGT 2 cut(s) 66, 111
TaqI TCGA 1 cut(s) 129
Tru1I TTAA 1 cut(s) 190
Tru9I TTAA 1 cut(s) 190
TspGWI ACGGA 1 cut(s) 163
Tth111I GACNNNGTC 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.