RLG00000027642

Monocopper oxidase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0018243
Physical Location & Seq
Reverse (-)
13470897 .. 13471558
662 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027642

Sequence Viewer

Length: 420 bp
ATGGTGCTTGTTGAAACAGAAGGTTCCTACACTGATGAAATCACCTTAGATTCTCTTGATGGGCAAGTTGGACAGTCCTACTGTGCGCTTGTCGCAGGTGATCAATCCCATTCAGACTATTACATGGTGGCAACTCCTAAATTGCTTAATAACACAGATGTGACCAATTTTGAATTGGCGTGCTGCACTATATATGATAATTCCACCACAGCTGCTGGTGGACCTCTAACAATTGGTCCTGATCCGTTTGATCTAGAATTCTCCATCAATCAAGCCAAGTTCATCAGTTGGAACTTGACTACAGGGGCAGCAAGGCCTAGTCCACAAGGAAGCTTCAACGTTCATAATGTGACACGATCACAGACATTCATACTATGTGCATCAACAGCAGAGATTGATGTGCACCCAAGTTTACCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

140

Amino Acids

14.93

Weight (kDa)

4.1

Isoelectric Point (pI)

46.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase PF00394 1 - 49 4.8e-08 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018243)

Species Orthologous Gene IDs
rosa_laevigata RLG00000027642
rosa_multiflora Rmu_sc0005725.1_g000001 Rmu_sc0006328.1_g000002 Rmu_sc0007589.1_g000003
rosa_roxburghii Rroxscaffold_4G00294480
rosa_rugosa Rorug01G0294700
rosa_samantha Rh1BG267300 Rh1CG285400 Rh1DG297400 Rh2AG328600
rosa_wichuraiana Rw1G027070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 86
Acc36I ACCTGC 1 cut(s) 86
AclI AACGTT 1 cut(s) 339
AclWI GGATC 1 cut(s) 236
AcsI RAATTY 1 cut(s) 257
AgsI TTSAA 3 cut(s) 14, 173, 337
AleI CACNNNNGTG 1 cut(s) 158
AluBI AGCT 2 cut(s) 212, 333
AluI AGCT 2 cut(s) 212, 333
Alw21I GWGCWC 1 cut(s) 405
Alw44I GTGCAC 1 cut(s) 401
AlwI GGATC 1 cut(s) 236
AlwNI CAGNNNCTG 1 cut(s) 215
AoxI GGCC 1 cut(s) 314
ApaLI GTGCAC 1 cut(s) 401
ApeKI GCWGC 3 cut(s) 183, 212, 308
ApoI RAATTY 1 cut(s) 257
AspLEI GCGC 1 cut(s) 88
AspS9I GGNCC 2 cut(s) 221, 236
AsuHPI GGTGA 2 cut(s) 34, 110
AvaII GGWCC 2 cut(s) 221, 236
BaeGI GKGCMC 1 cut(s) 405
Bbv12I GWGCWC 1 cut(s) 405
BbvI GCAGC 3 cut(s) 170, 199, 320
BccI CCATC 2 cut(s) 53, 272
BclI TGATCA 1 cut(s) 100
BfaI CTAG 2 cut(s) 254, 318
BfmI CTRYAG 1 cut(s) 300
BfuAI ACCTGC 1 cut(s) 86
BisI GCNGC 3 cut(s) 184, 213, 309
BlsI GCNGC 3 cut(s) 185, 214, 310
Bme18I GGWCC 2 cut(s) 221, 236
BmgT120I GGNCC 2 cut(s) 221, 236
BmiI GGNNCC 1 cut(s) 25
BmsI GCATC 1 cut(s) 389
BseSI GKGCMC 1 cut(s) 405
BseXI GCAGC 3 cut(s) 170, 199, 320
BsgI GTGCAG 1 cut(s) 169
BshFI GGCC 1 cut(s) 316
BsiHKAI GWGCWC 1 cut(s) 405
BsnI GGCC 1 cut(s) 316
Bsp1286I GDGCHC 1 cut(s) 405
Bsp143I GATC 4 cut(s) 100, 241, 250, 356
BspANI GGCC 1 cut(s) 316
BspLI GGNNCC 1 cut(s) 25
BspMI ACCTGC 1 cut(s) 86
BspPI GGATC 1 cut(s) 236
BssMI GATC 4 cut(s) 100, 241, 250, 356
Bst4CI ACNGT 3 cut(s) 75, 83, 417
BstC8I GCNNGC 1 cut(s) 181
BstDEI CTNAG 1 cut(s) 46
BstHHI GCGC 1 cut(s) 88
BstKTI GATC 4 cut(s) 103, 244, 253, 359
BstMBI GATC 4 cut(s) 100, 241, 250, 356
BstMWI GCNNNNNNNGC 2 cut(s) 92, 386
BstSFI CTRYAG 1 cut(s) 300
BstSLI GKGCMC 1 cut(s) 405
BstV1I GCAGC 3 cut(s) 170, 199, 320
BsuRI GGCC 1 cut(s) 316
BtsIMutI CAGTG 1 cut(s) 30
BveI ACCTGC 1 cut(s) 86
Cac8I GCNNGC 1 cut(s) 181
CaiI CAGNNNCTG 1 cut(s) 215
CfoI GCGC 1 cut(s) 88
Cfr13I GGNCC 2 cut(s) 221, 236
CviAII CATG 1 cut(s) 124
CviJI RGCY 4 cut(s) 212, 275, 316, 333
CviKI_1 RGCY 4 cut(s) 212, 275, 316, 333
DdeI CTNAG 1 cut(s) 46
DpnI GATC 4 cut(s) 102, 243, 252, 358
DpnII GATC 4 cut(s) 100, 241, 250, 356
Eco147I AGGCCT 1 cut(s) 316
Eco47I GGWCC 2 cut(s) 221, 236
EcoRI GAATTC 1 cut(s) 257
FaeI CATG 1 cut(s) 127
FaiI YATR 7 cut(s) 125, 191, 193, 195, 345, 371, 376
FatI CATG 1 cut(s) 123
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 3 cut(s) 184, 213, 309
Fsp4HI GCNGC 3 cut(s) 184, 213, 309
FspBI CTAG 2 cut(s) 254, 318
GlaI GCGC 1 cut(s) 87
GluI GCNGC 3 cut(s) 184, 213, 309
HaeIII GGCC 1 cut(s) 316
HhaI GCGC 1 cut(s) 88
Hin1II CATG 1 cut(s) 127
Hin6I GCGC 1 cut(s) 86
HinP1I GCGC 1 cut(s) 86
HindIII AAGCTT 1 cut(s) 331
HinfI GANTC 1 cut(s) 50
HphI GGTGA 2 cut(s) 34, 110
Hpy166II GTNNAC 4 cut(s) 221, 323, 403, 413
Hpy188I TCNGA 1 cut(s) 115
Hpy188III TCNNGA 3 cut(s) 56, 239, 254
Hpy8I GTNNAC 4 cut(s) 221, 323, 403, 413
HpyAV CCTTC 1 cut(s) 14
HpyCH4III ACNGT 3 cut(s) 75, 83, 417
HpyCH4IV ACGT 1 cut(s) 339
HpyCH4V TGCA 3 cut(s) 186, 380, 403
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 386
HpyF3I CTNAG 1 cut(s) 46
HpySE526I ACGT 1 cut(s) 339
Hsp92II CATG 1 cut(s) 127
HspAI GCGC 1 cut(s) 86
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 4 cut(s) 100, 241, 250, 356
LpnPI CCDG 4 cut(s) 81, 201, 252, 288
Lsp1109I GCAGC 3 cut(s) 170, 199, 320
LweI GCATC 1 cut(s) 389
MaeI CTAG 2 cut(s) 254, 318
MaeII ACGT 1 cut(s) 339
MaeIII GTNAC 2 cut(s) 160, 349
MalI GATC 4 cut(s) 102, 243, 252, 358
MboI GATC 4 cut(s) 100, 241, 250, 356
MfeI CAATTG 1 cut(s) 231
MhlI GDGCHC 1 cut(s) 405
MluCI AATT 6 cut(s) 140, 166, 173, 199, 231, 257
MmeI TCCRAC 2 cut(s) 49, 269
MnlI CCTC 1 cut(s) 234
MseI TTAA 1 cut(s) 147
MslI CAYNNNNRTG 1 cut(s) 158
MspA1I CMGCKG 1 cut(s) 212
MunI CAATTG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 92, 386
NdeII GATC 4 cut(s) 100, 241, 250, 356
NlaIII CATG 1 cut(s) 127
NlaIV GGNNCC 1 cut(s) 25
NmuCI GTSAC 2 cut(s) 160, 349
OliI CACNNNNGTG 1 cut(s) 158
PaqCI CACCTGC 1 cut(s) 86
PceI AGGCCT 1 cut(s) 316
PfeI GAWTC 1 cut(s) 50
PkrI GCNGC 3 cut(s) 185, 214, 310
Psp1406I AACGTT 1 cut(s) 339
PspN4I GGNNCC 1 cut(s) 25
PspPI GGNCC 2 cut(s) 221, 236
PstNI CAGNNNCTG 1 cut(s) 215
PvuII CAGCTG 1 cut(s) 212
RseI CAYNNNNRTG 1 cut(s) 158
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 3 cut(s) 184, 213, 309
Sau3AI GATC 4 cut(s) 100, 241, 250, 356
Sau96I GGNCC 2 cut(s) 221, 236
SduI GDGCHC 1 cut(s) 405
SetI ASST 7 cut(s) 25, 47, 100, 214, 226, 335, 342
SfaNI GCATC 1 cut(s) 389
SfcI CTRYAG 1 cut(s) 300
SinI GGWCC 2 cut(s) 221, 236
SmiMI CAYNNNNRTG 1 cut(s) 158
Sse9I AATT 6 cut(s) 140, 166, 173, 199, 231, 257
SseBI AGGCCT 1 cut(s) 316
SspMI CTAG 2 cut(s) 254, 318
StuI AGGCCT 1 cut(s) 316
TaaI ACNGT 3 cut(s) 75, 83, 417
TaiI ACGT 1 cut(s) 342
TasI AATT 6 cut(s) 140, 166, 173, 199, 231, 257
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TscAI CASTG 1 cut(s) 37
TseFI GTSAC 2 cut(s) 160, 349
TseI GCWGC 3 cut(s) 183, 212, 308
Tsp45I GTSAC 2 cut(s) 160, 349
TspDTI ATGAA 4 cut(s) 51, 271, 332, 358
TspGWI ACGGA 1 cut(s) 234
TspRI CASTG 1 cut(s) 37
VneI GTGCAC 1 cut(s) 401
VpaK11BI GGWCC 2 cut(s) 221, 236
XapI RAATTY 1 cut(s) 257
XbaI TCTAGA 1 cut(s) 253
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XspI CTAG 2 cut(s) 254, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.