Rh2AG328600

Monocopper oxidase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0018243
Physical Location & Seq
Forward (+)
47287942 .. 47289285
1344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG328600.1

Sequence Viewer

Length: 348 bp
ATGGATTCTGTTGATGTACGTGGTGGACAGTCCTACTCTGTGCTTGTCACAGCTGATCAAGCCACGTCAGGCTACTACATGGTAGCAACTCCTAAATTGCTTAATATCACTGATATGACCAAATTTGGAATTGGTGTGCTGGACTGTGATAACTCCACCACAGCTGCTGGTGGACCTCTACCAATTGGCCCTGATCTGTTTGATCTAGACTTCTCCATCAAACCAAGCCAAGTCCTTCAGGAAAATTTGTCCCGCCGGCCACTTCCCCTAGCTTCTGCACCTTCTGCTCCTCCTCCAAAGCCATCTGGTGCACCATCACCTTTGAAAACTACAGCAGCAGATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

115

Amino Acids

11.97

Weight (kDa)

4.54

Isoelectric Point (pI)

53.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase PF00394 1 - 30 1.2e-06 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018243)

Species Orthologous Gene IDs
rosa_laevigata RLG00000027642
rosa_multiflora Rmu_sc0005725.1_g000001 Rmu_sc0006328.1_g000002 Rmu_sc0007589.1_g000003
rosa_roxburghii Rroxscaffold_4G00294480
rosa_rugosa Rorug01G0294700
rosa_samantha Rh1BG267300 Rh1CG285400 Rh1DG297400 Rh2AG328600
rosa_wichuraiana Rw1G027070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 253
AcoI YGGCCR 1 cut(s) 257
AcsI RAATTY 2 cut(s) 122, 244
AcuI CTGAAG 1 cut(s) 221
AfaI GTAC 1 cut(s) 18
AgsI TTSAA 1 cut(s) 325
AjiI CACGTC 1 cut(s) 66
AluBI AGCT 3 cut(s) 53, 164, 272
AluI AGCT 3 cut(s) 53, 164, 272
Alw21I GWGCWC 1 cut(s) 313
Alw44I GTGCAC 1 cut(s) 309
AlwNI CAGNNNCTG 1 cut(s) 167
AoxI GGCC 2 cut(s) 187, 257
ApaLI GTGCAC 1 cut(s) 309
ApeKI GCWGC 2 cut(s) 164, 335
ApoI RAATTY 2 cut(s) 122, 244
AspS9I GGNCC 2 cut(s) 173, 188
AsuHPI GGTGA 1 cut(s) 309
AvaII GGWCC 1 cut(s) 173
BaeGI GKGCMC 1 cut(s) 313
Bbv12I GWGCWC 1 cut(s) 313
BbvI GCAGC 1 cut(s) 151
BccI CCATC 3 cut(s) 224, 310, 322
BclI TGATCA 1 cut(s) 55
BfaI CTAG 2 cut(s) 206, 269
BfmI CTRYAG 1 cut(s) 330
BisI GCNGC 2 cut(s) 165, 336
BlsI GCNGC 2 cut(s) 166, 337
Bme18I GGWCC 1 cut(s) 173
BmgBI CACGTC 1 cut(s) 66
BmgT120I GGNCC 2 cut(s) 173, 188
BsaAI YACGTR 1 cut(s) 20
Bse118I RCCGGY 1 cut(s) 255
BseRI GAGGAG 2 cut(s) 279, 282
BseSI GKGCMC 1 cut(s) 313
BseXI GCAGC 1 cut(s) 151
BsgI GTGCAG 1 cut(s) 261
BshFI GGCC 2 cut(s) 189, 259
BsiHKAI GWGCWC 1 cut(s) 313
BsiSI CCGG 1 cut(s) 256
BslFI GGGAC 1 cut(s) 235
BsmFI GGGAC 1 cut(s) 235
BsnI GGCC 2 cut(s) 189, 259
Bsp1286I GDGCHC 1 cut(s) 313
Bsp143I GATC 3 cut(s) 55, 193, 202
BspACI CCGC 1 cut(s) 253
BspANI GGCC 2 cut(s) 189, 259
BsrFI RCCGGY 1 cut(s) 255
BssAI RCCGGY 1 cut(s) 255
BssMI GATC 3 cut(s) 55, 193, 202
Bst4CI ACNGT 2 cut(s) 30, 146
BstAPI GCANNNNNTGC 1 cut(s) 284
BstBAI YACGTR 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 257
BstKTI GATC 3 cut(s) 58, 196, 205
BstMBI GATC 3 cut(s) 55, 193, 202
BstMWI GCNNNNNNNGC 2 cut(s) 59, 284
BstSFI CTRYAG 1 cut(s) 330
BstSLI GKGCMC 1 cut(s) 313
BstV1I GCAGC 1 cut(s) 151
BsuRI GGCC 2 cut(s) 189, 259
BtrI CACGTC 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 257
CaiI CAGNNNCTG 1 cut(s) 167
Cfr10I RCCGGY 1 cut(s) 255
Cfr13I GGNCC 2 cut(s) 173, 188
Csp6I GTAC 1 cut(s) 17
CviAII CATG 1 cut(s) 79
CviJI RGCY 9 cut(s) 53, 62, 72, 164, 189, 228, 259, 272, 301
CviKI_1 RGCY 9 cut(s) 53, 62, 72, 164, 189, 228, 259, 272, 301
CviQI GTAC 1 cut(s) 17
DpnI GATC 3 cut(s) 57, 195, 204
DpnII GATC 3 cut(s) 55, 193, 202
EaeI YGGCCR 1 cut(s) 257
Eco47I GGWCC 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 221
FaeI CATG 1 cut(s) 82
FaiI YATR 2 cut(s) 80, 116
FaqI GGGAC 1 cut(s) 235
FatI CATG 1 cut(s) 78
FauI CCCGC 1 cut(s) 260
FbaI TGATCA 1 cut(s) 55
Fnu4HI GCNGC 2 cut(s) 165, 336
Fsp4HI GCNGC 2 cut(s) 165, 336
FspBI CTAG 2 cut(s) 206, 269
GluI GCNGC 2 cut(s) 165, 336
HaeIII GGCC 2 cut(s) 189, 259
HapII CCGG 1 cut(s) 256
Hin1II CATG 1 cut(s) 82
HinfI GANTC 1 cut(s) 5
HpaII CCGG 1 cut(s) 256
HphI GGTGA 1 cut(s) 309
Hpy166II GTNNAC 3 cut(s) 26, 173, 311
Hpy188III TCNNGA 2 cut(s) 206, 239
Hpy8I GTNNAC 3 cut(s) 26, 173, 311
HpyAV CCTTC 2 cut(s) 245, 291
HpyCH4III ACNGT 2 cut(s) 30, 146
HpyCH4IV ACGT 2 cut(s) 19, 65
HpyCH4V TGCA 2 cut(s) 278, 311
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 284
HpySE526I ACGT 2 cut(s) 19, 65
Hsp92II CATG 1 cut(s) 82
KroI GCCGGC 1 cut(s) 255
KroNI GCCGGC 1 cut(s) 257
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 3 cut(s) 55, 193, 202
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 7 cut(s) 54, 125, 153, 204, 224, 269, 291
Lsp1109I GCAGC 1 cut(s) 151
MaeI CTAG 2 cut(s) 206, 269
MaeII ACGT 2 cut(s) 19, 65
MaeIII GTNAC 1 cut(s) 46
MalI GATC 3 cut(s) 57, 195, 204
MboI GATC 3 cut(s) 55, 193, 202
MfeI CAATTG 1 cut(s) 183
MhlI GDGCHC 1 cut(s) 313
MluCI AATT 5 cut(s) 95, 122, 129, 183, 244
MnlI CCTC 3 cut(s) 186, 300, 303
MroNI GCCGGC 1 cut(s) 255
MseI TTAA 2 cut(s) 102, 346
MslI CAYNNNNRTG 1 cut(s) 113
MspA1I CMGCKG 2 cut(s) 53, 164
MspI CCGG 1 cut(s) 256
MunI CAATTG 1 cut(s) 183
MwoI GCNNNNNNNGC 2 cut(s) 59, 284
NaeI GCCGGC 1 cut(s) 257
NdeII GATC 3 cut(s) 55, 193, 202
NgoMIV GCCGGC 1 cut(s) 255
NlaIII CATG 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 46
PdiI GCCGGC 1 cut(s) 257
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 2 cut(s) 166, 337
Ppu21I YACGTR 1 cut(s) 20
PspPI GGNCC 2 cut(s) 173, 188
PstNI CAGNNNCTG 1 cut(s) 167
PvuII CAGCTG 2 cut(s) 53, 164
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 113
SaqAI TTAA 2 cut(s) 102, 346
SatI GCNGC 2 cut(s) 165, 336
Sau3AI GATC 3 cut(s) 55, 193, 202
Sau96I GGNCC 2 cut(s) 173, 188
SduI GDGCHC 1 cut(s) 313
SetI ASST 8 cut(s) 22, 55, 68, 166, 178, 274, 283, 322
SfcI CTRYAG 1 cut(s) 330
SinI GGWCC 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 113
Sse9I AATT 5 cut(s) 95, 122, 129, 183, 244
SsiI CCGC 1 cut(s) 253
SspMI CTAG 2 cut(s) 206, 269
TaaI ACNGT 2 cut(s) 30, 146
TaiI ACGT 2 cut(s) 22, 68
TasI AATT 5 cut(s) 95, 122, 129, 183, 244
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 2 cut(s) 102, 346
Tru9I TTAA 2 cut(s) 102, 346
TscAI CASTG 1 cut(s) 115
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 2 cut(s) 164, 335
Tsp45I GTSAC 1 cut(s) 46
TspRI CASTG 1 cut(s) 115
VneI GTGCAC 1 cut(s) 309
VpaK11BI GGWCC 1 cut(s) 173
XapI RAATTY 2 cut(s) 122, 244
XbaI TCTAGA 1 cut(s) 205
XspI CTAG 2 cut(s) 206, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.