Rroxscaffold_4G00294480

Monocopper oxidase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0018243
Physical Location & Seq
Reverse (-)
14563668 .. 14564096
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00294480.1

Sequence Viewer

Length: 429 bp
ATGGTGCTGCTTGAAAAAGAAGGATCCTACACTAATGAAAGCACCATGGATTCTGTTGATGTACATGGTGGACAGTCCTACTCTCTGCTTGTCACAGCTGATCAAGCCACTTCAAACTATTACATGGTAGCAACTCCTAAATTGCTTAATATCACTGATATGACCAATTTTGGAATTGGTGTGCTGGACTATGATAACTCCACCACAGCTGCTGGTGGACCTCTACCAATTGGCCCTGATCTGTTTGATCTAGACTTCTCCATCAAACCAAGCCAAGTCCTTCAGGTAAACATAATAACCAGCATTTGTTGTTGCGTGGTTGCGCCTCTCTTCCTTCTAATGATCTTGTGCTTATGTCTAAAACAACATTGTGTTCGGAGTTACAGGAAACACTTTGAGCTTCTCTTTACGATTAAAGATCTATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

142

Amino Acids

15.64

Weight (kDa)

4.73

Isoelectric Point (pI)

31.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu-oxidase PF00394 1 - 66 2.9e-12 Multicopper oxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018243)

Species Orthologous Gene IDs
rosa_laevigata RLG00000027642
rosa_multiflora Rmu_sc0005725.1_g000001 Rmu_sc0006328.1_g000002 Rmu_sc0007589.1_g000003
rosa_roxburghii Rroxscaffold_4G00294480
rosa_rugosa Rorug01G0294700
rosa_samantha Rh1BG267300 Rh1CG285400 Rh1DG297400 Rh2AG328600
rosa_wichuraiana Rw1G027070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 18, 31
AcuI CTGAAG 1 cut(s) 266
AfaI GTAC 1 cut(s) 63
AgsI TTSAA 2 cut(s) 14, 114
AluBI AGCT 3 cut(s) 98, 209, 400
AluI AGCT 3 cut(s) 98, 209, 400
AlwI GGATC 2 cut(s) 18, 31
AlwNI CAGNNNCTG 1 cut(s) 212
AoxI GGCC 1 cut(s) 232
ApeKI GCWGC 2 cut(s) 7, 209
AspLEI GCGC 1 cut(s) 325
AspS9I GGNCC 2 cut(s) 218, 233
AvaII GGWCC 1 cut(s) 218
BamHI GGATCC 1 cut(s) 23
BbvI GCAGC 1 cut(s) 196
BccI CCATC 1 cut(s) 269
BclI TGATCA 1 cut(s) 100
BfaI CTAG 1 cut(s) 251
BglII AGATCT 1 cut(s) 418
BisI GCNGC 2 cut(s) 8, 210
BlsI GCNGC 2 cut(s) 9, 211
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 2 cut(s) 218, 233
BmiI GGNNCC 1 cut(s) 25
BsaJI CCNNGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 45
BseXI GCAGC 1 cut(s) 196
BshFI GGCC 1 cut(s) 234
BsnI GGCC 1 cut(s) 234
Bsp1407I TGTACA 1 cut(s) 61
Bsp143I GATC 6 cut(s) 23, 100, 238, 247, 342, 418
Bsp19I CCATGG 1 cut(s) 45
BspANI GGCC 1 cut(s) 234
BspLI GGNNCC 1 cut(s) 25
BspPI GGATC 2 cut(s) 18, 31
BsrGI TGTACA 1 cut(s) 61
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 6 cut(s) 23, 100, 238, 247, 342, 418
BssT1I CCWWGG 1 cut(s) 45
Bst4CI ACNGT 1 cut(s) 75
Bst6I CTCTTC 1 cut(s) 335
BstAUI TGTACA 1 cut(s) 61
BstDEI CTNAG 1 cut(s) 426
BstDSI CCRYGG 1 cut(s) 45
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 6 cut(s) 26, 103, 241, 250, 345, 421
BstMBI GATC 6 cut(s) 23, 100, 238, 247, 342, 418
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 196
BstX2I RGATCY 2 cut(s) 23, 418
BstYI RGATCY 2 cut(s) 23, 418
BsuRI GGCC 1 cut(s) 234
BtgI CCRYGG 1 cut(s) 45
BtsIMutI CAGTG 1 cut(s) 153
CaiI CAGNNNCTG 1 cut(s) 212
CfoI GCGC 1 cut(s) 325
Cfr13I GGNCC 2 cut(s) 218, 233
Csp6I GTAC 1 cut(s) 62
CviAII CATG 3 cut(s) 46, 65, 124
CviJI RGCY 6 cut(s) 98, 107, 209, 234, 273, 400
CviKI_1 RGCY 6 cut(s) 98, 107, 209, 234, 273, 400
CviQI GTAC 1 cut(s) 62
DdeI CTNAG 1 cut(s) 426
DpnI GATC 6 cut(s) 25, 102, 240, 249, 344, 420
DpnII GATC 6 cut(s) 23, 100, 238, 247, 342, 418
Eam1104I CTCTTC 1 cut(s) 335
EarI CTCTTC 1 cut(s) 335
Eco130I CCWWGG 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 218
Eco57I CTGAAG 1 cut(s) 266
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 3 cut(s) 49, 68, 127
FaiI YATR 7 cut(s) 47, 66, 125, 161, 192, 293, 355
FatI CATG 3 cut(s) 45, 64, 123
FbaI TGATCA 1 cut(s) 100
Fnu4HI GCNGC 2 cut(s) 8, 210
Fsp4HI GCNGC 2 cut(s) 8, 210
FspBI CTAG 1 cut(s) 251
GlaI GCGC 1 cut(s) 324
GluI GCNGC 2 cut(s) 8, 210
HaeIII GGCC 1 cut(s) 234
HhaI GCGC 1 cut(s) 325
Hin1II CATG 3 cut(s) 49, 68, 127
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HinfI GANTC 1 cut(s) 50
Hpy166II GTNNAC 3 cut(s) 71, 218, 289
Hpy188I TCNGA 1 cut(s) 378
Hpy188III TCNNGA 1 cut(s) 251
Hpy8I GTNNAC 3 cut(s) 71, 218, 289
HpyAV CCTTC 3 cut(s) 14, 290, 344
HpyCH4III ACNGT 1 cut(s) 75
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
HpyF3I CTNAG 1 cut(s) 426
Hsp92II CATG 3 cut(s) 49, 68, 127
HspAI GCGC 1 cut(s) 323
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 6 cut(s) 23, 100, 238, 247, 342, 418
LpnPI CCDG 6 cut(s) 170, 198, 249, 269, 313, 370
Lsp1109I GCAGC 1 cut(s) 196
MaeI CTAG 1 cut(s) 251
MaeIII GTNAC 2 cut(s) 91, 380
MalI GATC 6 cut(s) 25, 102, 240, 249, 344, 420
MboI GATC 6 cut(s) 23, 100, 238, 247, 342, 418
MboII GAAGA 1 cut(s) 322
MfeI CAATTG 1 cut(s) 228
MflI RGATCY 2 cut(s) 23, 418
MluCI AATT 4 cut(s) 140, 166, 174, 228
MnlI CCTC 2 cut(s) 231, 336
MseI TTAA 2 cut(s) 147, 414
MslI CAYNNNNRTG 1 cut(s) 158
MspA1I CMGCKG 2 cut(s) 98, 209
MunI CAATTG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 104
NcoI CCATGG 1 cut(s) 45
NdeII GATC 6 cut(s) 23, 100, 238, 247, 342, 418
NlaIII CATG 3 cut(s) 49, 68, 127
NlaIV GGNNCC 1 cut(s) 25
NmuCI GTSAC 1 cut(s) 91
PfeI GAWTC 1 cut(s) 50
PkrI GCNGC 2 cut(s) 9, 211
PspN4I GGNNCC 1 cut(s) 25
PspPI GGNCC 2 cut(s) 218, 233
PstNI CAGNNNCTG 1 cut(s) 212
PsuI RGATCY 2 cut(s) 23, 418
PvuII CAGCTG 2 cut(s) 98, 209
RsaI GTAC 1 cut(s) 63
RsaNI GTAC 1 cut(s) 62
RseI CAYNNNNRTG 1 cut(s) 158
SaqAI TTAA 2 cut(s) 147, 414
SatI GCNGC 2 cut(s) 8, 210
Sau3AI GATC 6 cut(s) 23, 100, 238, 247, 342, 418
Sau96I GGNCC 2 cut(s) 218, 233
SetI ASST 5 cut(s) 100, 211, 223, 288, 402
SinI GGWCC 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 158
Sse9I AATT 4 cut(s) 140, 166, 174, 228
SspMI CTAG 1 cut(s) 251
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 75
TasI AATT 4 cut(s) 140, 166, 174, 228
TatI WGTACW 1 cut(s) 61
TfiI GAWTC 1 cut(s) 50
Tru1I TTAA 2 cut(s) 147, 414
Tru9I TTAA 2 cut(s) 147, 414
TscAI CASTG 1 cut(s) 160
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 2 cut(s) 7, 209
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 1 cut(s) 51
TspRI CASTG 1 cut(s) 160
VpaK11BI GGWCC 1 cut(s) 218
XbaI TCTAGA 1 cut(s) 250
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.