Rorug01G0294700

Monocopper oxidase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0018243
Physical Location & Seq
Forward (+)
41027791 .. 41028667
877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0294700.1

Sequence Viewer

Length: 300 bp
ATGAAGATGGGCGCGCATTTCAAGGCAGCCTTTGCACAGCAGATTTCGAATGCTGCATCAGCCAAGCAGGTGGAGCTTTTGGCGTTAAAAACAGGATTACAGCTGGTTCAACACCTACAGGTGGAACAAGTGATTGTGGAGACTGATTGTCAGGAAGCAGCCAAGGACATTCTTAATTCAAATCATGCTCTTATGGCAGAAGGGGGTCTCATTGACGACATCAAGGTCTGCTTAAGTTGTATGCCTACTGTGTCAATTTTTATTCCCCTAGAACATGTAATAGGGTGGCTCCTATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu-oxidase Cu-oxidase_2 Cu-oxidase_3

Protein Analysis

99

Amino Acids

10.8

Weight (kDa)

5.38

Isoelectric Point (pI)

35.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 6 - 86 1.5e-10 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018243)

Species Orthologous Gene IDs
rosa_laevigata RLG00000027642
rosa_multiflora Rmu_sc0005725.1_g000001 Rmu_sc0006328.1_g000002 Rmu_sc0007589.1_g000003
rosa_roxburghii Rroxscaffold_4G00294480
rosa_rugosa Rorug01G0294700
rosa_samantha Rh1BG267300 Rh1CG285400 Rh1DG297400 Rh2AG328600
rosa_wichuraiana Rw1G027070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 58
AasI GACNNNNNNGTC 1 cut(s) 224
Acc36I ACCTGC 1 cut(s) 58
AccII CGCG 1 cut(s) 14
AfiI CCNNNNNNNGG 1 cut(s) 121
AflII CTTAAG 1 cut(s) 232
AflIII ACRYGT 1 cut(s) 274
AgsI TTSAA 3 cut(s) 22, 110, 180
AhdI GACNNNNNGTC 1 cut(s) 147
AluBI AGCT 2 cut(s) 76, 103
AluI AGCT 2 cut(s) 76, 103
Alw26I GTCTC 2 cut(s) 134, 212
ApeKI GCWGC 3 cut(s) 26, 53, 158
AspLEI GCGC 2 cut(s) 14, 16
AsuII TTCGAA 1 cut(s) 47
BbvI GCAGC 3 cut(s) 38, 40, 170
BcoDI GTCTC 2 cut(s) 134, 212
BfaI CTAG 2 cut(s) 269, 298
BfmI CTRYAG 1 cut(s) 116
BfrI CTTAAG 1 cut(s) 232
BfuAI ACCTGC 1 cut(s) 58
BisI GCNGC 3 cut(s) 27, 54, 159
BlsI GCNGC 3 cut(s) 28, 55, 160
BmeRI GACNNNNNGTC 1 cut(s) 147
BmiI GGNNCC 1 cut(s) 290
BmsI GCATC 1 cut(s) 65
Bpu14I TTCGAA 1 cut(s) 47
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 162
BseLI CCNNNNNNNGG 1 cut(s) 121
BsePI GCGCGC 1 cut(s) 12
BseXI GCAGC 3 cut(s) 38, 40, 170
Bsh1236I CGCG 1 cut(s) 14
BslI CCNNNNNNNGG 1 cut(s) 121
BsmAI GTCTC 2 cut(s) 134, 212
BsmI GAATGC 1 cut(s) 55
Bso31I GGTCTC 1 cut(s) 212
Bsp119I TTCGAA 1 cut(s) 47
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 1 cut(s) 290
BspMI ACCTGC 1 cut(s) 58
BspT104I TTCGAA 1 cut(s) 47
BspTI CTTAAG 1 cut(s) 232
BspTNI GGTCTC 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 162
BssHII GCGCGC 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 250
BstAFI CTTAAG 1 cut(s) 232
BstAPI GCANNNNNTGC 1 cut(s) 32
BstBI TTCGAA 1 cut(s) 47
BstC8I GCNNGC 1 cut(s) 14
BstFNI CGCG 1 cut(s) 14
BstHHI GCGC 2 cut(s) 14, 16
BstMAI GTCTC 2 cut(s) 134, 212
BstMWI GCNNNNNNNGC 4 cut(s) 32, 59, 73, 194
BstNSI RCATGY 1 cut(s) 278
BstSFI CTRYAG 1 cut(s) 116
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 3 cut(s) 38, 40, 170
BstXI CCANNNNNNTGG 1 cut(s) 70
BveI ACCTGC 1 cut(s) 58
Cac8I GCNNGC 1 cut(s) 14
CfoI GCGC 2 cut(s) 14, 16
CviAII CATG 2 cut(s) 185, 275
CviJI RGCY 6 cut(s) 29, 62, 76, 103, 161, 289
CviKI_1 RGCY 6 cut(s) 29, 62, 76, 103, 161, 289
DrdI GACNNNNNNGTC 1 cut(s) 224
DriI GACNNNNNGTC 1 cut(s) 147
DseDI GACNNNNNNGTC 1 cut(s) 224
Eam1105I GACNNNNNGTC 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 162
Eco31I GGTCTC 1 cut(s) 212
EcoT14I CCWWGG 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 2 cut(s) 188, 278
FaiI YATR 5 cut(s) 186, 194, 242, 276, 295
FalI AAGNNNNNCTT 4 cut(s) 14, 46, 215, 247
FatI CATG 2 cut(s) 184, 274
Fnu4HI GCNGC 3 cut(s) 27, 54, 159
Fsp4HI GCNGC 3 cut(s) 27, 54, 159
FspBI CTAG 2 cut(s) 269, 298
GlaI GCGC 2 cut(s) 13, 15
GluI GCNGC 3 cut(s) 27, 54, 159
HhaI GCGC 2 cut(s) 14, 16
Hin1II CATG 2 cut(s) 188, 278
Hin6I GCGC 2 cut(s) 12, 14
HinP1I GCGC 2 cut(s) 12, 14
Hpy188III TCNNGA 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4V TGCA 2 cut(s) 35, 56
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 59, 73, 194
Hsp92II CATG 2 cut(s) 188, 278
HspAI GCGC 2 cut(s) 12, 14
LmnI GCTCC 2 cut(s) 73, 294
LpnPI CCDG 5 cut(s) 53, 78, 89, 104, 137
Lsp1109I GCAGC 3 cut(s) 38, 40, 170
LweI GCATC 1 cut(s) 65
MaeI CTAG 2 cut(s) 269, 298
MboII GAAGA 1 cut(s) 16
MluCI AATT 2 cut(s) 175, 255
MseI TTAA 3 cut(s) 86, 174, 233
MspA1I CMGCKG 1 cut(s) 103
MspCI CTTAAG 1 cut(s) 232
Mva1269I GAATGC 1 cut(s) 55
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 4 cut(s) 32, 59, 73, 194
NlaIII CATG 2 cut(s) 188, 278
NlaIV GGNNCC 1 cut(s) 290
NspI RCATGY 1 cut(s) 278
NspV TTCGAA 1 cut(s) 47
PaqCI CACCTGC 1 cut(s) 58
PauI GCGCGC 1 cut(s) 12
PciI ACATGT 1 cut(s) 274
PctI GAATGC 1 cut(s) 55
PkrI GCNGC 3 cut(s) 28, 55, 160
PscI ACATGT 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 290
PteI GCGCGC 1 cut(s) 12
PvuII CAGCTG 1 cut(s) 103
SaqAI TTAA 3 cut(s) 86, 174, 233
SatI GCNGC 3 cut(s) 27, 54, 159
SetI ASST 6 cut(s) 72, 78, 105, 117, 123, 228
SfaNI GCATC 1 cut(s) 65
SfcI CTRYAG 1 cut(s) 116
SfuI TTCGAA 1 cut(s) 47
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
Sse9I AATT 2 cut(s) 175, 255
SspMI CTAG 2 cut(s) 269, 298
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 250
TaqI TCGA 1 cut(s) 47
TasI AATT 2 cut(s) 175, 255
Tru1I TTAA 3 cut(s) 86, 174, 233
Tru9I TTAA 3 cut(s) 86, 174, 233
TseI GCWGC 3 cut(s) 26, 53, 158
TspDTI ATGAA 1 cut(s) 17
Vha464I CTTAAG 1 cut(s) 232
XceI RCATGY 1 cut(s) 278
XspI CTAG 2 cut(s) 269, 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.