RLG00000029498
ERF Family

Transducin WD40 repeat-like superfamily protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
39525675 .. 39529674
4000 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029498

Sequence Viewer

Length: 972 bp
ATGCCGCTAAGAAATGTGGTGTCTGGGACTACCATTATCACTGGTGAAATTGGTGAGCAAGTTCAAATTGTTGGTGATGATCTCCTTGTTACAAACCCAAAGCGAGGGGAGAAAGCAATCAAAGAGAGGAGCTGTAATGCCCTTCTTTTGAAGGTGAATCAAATTGGTTCAGTAACCAACAGTGTTGAAGCTCTGCAAATGTCAAAACGTGCTGGCCAGGATGTCACAGCAAATCACCGAAGTGGTGCAACTGAGGCTTTACAAGAGGCTGTAAAAATCTTTGATGAGACAAAAGTTGATGATGTTGATGGGAAGGTCTCAATATATTCACCACAAGATGGTATATATAAGCTGTTCAACCTTAAAAACTATCTCATGCTTTACTCTATATCAGACAAAAATGTACAAGAAATCAAGTTCAGTCCAGGTCTCATGCTGCTGATTTTCAATAGAGCTAGTACCCATGTTCTGCTGAAGATTATGTCCATAGAAGATGGCACAGTTCTCAAAGCTTTTAACAACATTCTTCATCGAAACAAGGTGTCTTTCATAGGACAATTCAATGAAAAGCTTCTTGTTAAGCAGGAAAAGAAAAATCTCCAGATTCTTGATGTTCGAAATGTGGAGCTGCTGGAAGTTAACAGAGCTGAGTTCCCGACATTCAAGAATATAACTGTGGCCGTCTGGATTGTTCTCTCAACACATGCTCTATCTACTCTGGATGCAATTTGTTTGTTTCAAAGAGGGGGTTCAGAAGGCGTTTCAGATTTAAAAGCTAGAATGCCCAATTTAGTTGAGGACATAGGTGCGTATGTTCCCAAAACGGGTTTTGGTTTGGATTGTGTGGGAATTGGACAAGTTGAGTTCAGGTTAGATGATGGTGTTTTATTGCACTCTTTCTTGGTTCCAGTGGTGTCATTTGTTAGGTTGGGTGCTCCTTTACATTTGAGGGACGCAGCCGAAGTGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

324

Amino Acids

35.59

Weight (kDa)

6.61

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Enolase_C PF00113 9 - 86 3.8e-26 Enolase, C-terminal TIM barrel domain
DUF7899 PF25463 89 - 222 3.3e-52 Domain of unknown function (DUF7899)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0022974)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 338
AciI CCGC 1 cut(s) 5
AcoI YGGCCR 2 cut(s) 214, 678
AcuI CTGAAG 1 cut(s) 494
AfaI GTAC 2 cut(s) 405, 460
AfiI CCNNNNNNNGG 4 cut(s) 104, 338, 824, 966
AgsI TTSAA 8 cut(s) 65, 151, 188, 358, 448, 562, 664, 740
AjnI CCWGG 2 cut(s) 216, 424
AleI CACNNNNGTG 1 cut(s) 240
AluBI AGCT 9 cut(s) 132, 191, 352, 455, 512, 571, 628, 647, 776
AluI AGCT 9 cut(s) 132, 191, 352, 455, 512, 571, 628, 647, 776
Alw21I GWGCWC 1 cut(s) 937
Alw26I GTCTC 3 cut(s) 281, 322, 434
AoxI GGCC 2 cut(s) 214, 678
ApeKI GCWGC 3 cut(s) 436, 628, 956
Asp700I GAANNNNTTC 1 cut(s) 570
AsuHPI GGTGA 6 cut(s) 56, 65, 86, 166, 227, 321
AsuII TTCGAA 1 cut(s) 616
BalI TGGCCA 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 937
BbvI GCAGC 3 cut(s) 423, 615, 968
BccI CCATC 4 cut(s) 302, 332, 488, 872
BceAI ACGGC 1 cut(s) 665
BciT130I CCWGG 2 cut(s) 218, 426
BcoDI GTCTC 3 cut(s) 281, 322, 434
BfaI CTAG 2 cut(s) 456, 777
BisI GCNGC 4 cut(s) 5, 437, 629, 957
BlsI GCNGC 4 cut(s) 6, 438, 630, 958
Bme1390I CCNGG 2 cut(s) 218, 426
BmiI GGNNCC 1 cut(s) 906
BmrFI CCNGG 2 cut(s) 218, 426
BmsI GCATC 1 cut(s) 712
BpmI CTGGAG 1 cut(s) 584
Bpu14I TTCGAA 1 cut(s) 616
BsaI GGTCTC 2 cut(s) 322, 434
Bsc4I CCNNNNNNNGG 4 cut(s) 104, 338, 824, 966
Bse1I ACTGG 2 cut(s) 46, 908
BseBI CCWGG 2 cut(s) 218, 426
BseGI GGATG 2 cut(s) 226, 727
BseLI CCNNNNNNNGG 4 cut(s) 104, 338, 824, 966
BseMII CTCAG 2 cut(s) 243, 639
BseNI ACTGG 2 cut(s) 46, 908
BseRI GAGGAG 1 cut(s) 142
BseXI GCAGC 3 cut(s) 423, 615, 968
BshFI GGCC 2 cut(s) 216, 680
BsiHKAI GWGCWC 1 cut(s) 937
BslFI GGGAC 2 cut(s) 40, 965
BslI CCNNNNNNNGG 4 cut(s) 104, 338, 824, 966
BsmAI GTCTC 3 cut(s) 281, 322, 434
BsmFI GGGAC 2 cut(s) 40, 965
BsmI GAATGC 1 cut(s) 786
BsnI GGCC 2 cut(s) 216, 680
Bso31I GGTCTC 2 cut(s) 322, 434
Bsp119I TTCGAA 1 cut(s) 616
Bsp1286I GDGCHC 1 cut(s) 937
Bsp1407I TGTACA 1 cut(s) 403
Bsp143I GATC 1 cut(s) 79
BspACI CCGC 1 cut(s) 5
BspANI GGCC 2 cut(s) 216, 680
BspCNI CTCAG 2 cut(s) 244, 640
BspLI GGNNCC 1 cut(s) 906
BspT104I TTCGAA 1 cut(s) 616
BspTNI GGTCTC 2 cut(s) 322, 434
BsrGI TGTACA 1 cut(s) 403
BsrI ACTGG 2 cut(s) 46, 908
BssMI GATC 1 cut(s) 79
Bst2UI CCWGG 2 cut(s) 218, 426
Bst4CI ACNGT 3 cut(s) 182, 502, 676
BstAUI TGTACA 1 cut(s) 403
BstBI TTCGAA 1 cut(s) 616
BstC8I GCNNGC 1 cut(s) 214
BstDEI CTNAG 3 cut(s) 8, 252, 648
BstF5I GGATG 2 cut(s) 226, 727
BstKTI GATC 1 cut(s) 82
BstMAI GTCTC 3 cut(s) 281, 322, 434
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstNI CCWGG 2 cut(s) 218, 426
BstNSI RCATGY 1 cut(s) 707
BstSCI CCNGG 2 cut(s) 216, 424
BstV1I GCAGC 3 cut(s) 423, 615, 968
BsuRI GGCC 2 cut(s) 216, 680
BtsCI GGATG 2 cut(s) 226, 727
BtsIMutI CAGTG 3 cut(s) 39, 187, 915
Cac8I GCNNGC 1 cut(s) 214
CseI GACGC 1 cut(s) 962
Csp6I GTAC 2 cut(s) 404, 459
CviAII CATG 4 cut(s) 376, 433, 464, 704
CviQI GTAC 2 cut(s) 404, 459
DdeI CTNAG 3 cut(s) 8, 252, 648
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
DraI TTTAAA 1 cut(s) 771
EaeI YGGCCR 2 cut(s) 214, 678
Eco31I GGTCTC 2 cut(s) 322, 434
Eco57I CTGAAG 1 cut(s) 494
EcoRII CCWGG 2 cut(s) 216, 424
FaeI CATG 4 cut(s) 379, 436, 467, 707
FaqI GGGAC 2 cut(s) 40, 965
FatI CATG 4 cut(s) 375, 432, 463, 703
Fnu4HI GCNGC 4 cut(s) 5, 437, 629, 957
FokI GGATG 2 cut(s) 233, 734
Fsp4HI GCNGC 4 cut(s) 5, 437, 629, 957
FspBI CTAG 2 cut(s) 456, 777
GluI GCNGC 4 cut(s) 5, 437, 629, 957
GsuI CTGGAG 1 cut(s) 584
HaeIII GGCC 2 cut(s) 216, 680
HgaI GACGC 1 cut(s) 962
Hin1II CATG 4 cut(s) 379, 436, 467, 707
HincII GTYRAC 1 cut(s) 640
HindII GTYRAC 1 cut(s) 640
HindIII AAGCTT 2 cut(s) 510, 569
HinfI GANTC 2 cut(s) 157, 604
HpaI GTTAAC 1 cut(s) 640
HphI GGTGA 6 cut(s) 56, 65, 86, 166, 227, 321
Hpy166II GTNNAC 1 cut(s) 640
Hpy188I TCNGA 3 cut(s) 394, 754, 766
Hpy188III TCNNGA 6 cut(s) 601, 608, 655, 664, 685, 719
Hpy8I GTNNAC 1 cut(s) 640
HpyAV CCTTC 4 cut(s) 145, 152, 307, 749
HpyCH4III ACNGT 3 cut(s) 182, 502, 676
HpyCH4IV ACGT 1 cut(s) 208
HpyCH4V TGCA 4 cut(s) 196, 248, 725, 892
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 3 cut(s) 8, 252, 648
HpySE526I ACGT 1 cut(s) 208
Hsp92II CATG 4 cut(s) 379, 436, 467, 707
KspAI GTTAAC 1 cut(s) 640
Kzo9I GATC 1 cut(s) 79
LmnI GCTCC 3 cut(s) 129, 625, 940
Lsp1109I GCAGC 3 cut(s) 423, 615, 968
LweI GCATC 1 cut(s) 712
MaeI CTAG 2 cut(s) 456, 777
MaeII ACGT 1 cut(s) 208
MaeIII GTNAC 3 cut(s) 88, 172, 223
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 3 cut(s) 487, 503, 518
MhlI GDGCHC 1 cut(s) 937
MlsI TGGCCA 1 cut(s) 216
MluCI AATT 7 cut(s) 48, 66, 162, 557, 726, 787, 849
MluNI TGGCCA 1 cut(s) 216
MnlI CCTC 7 cut(s) 98, 120, 247, 259, 737, 790, 942
Mox20I TGGCCA 1 cut(s) 216
MroXI GAANNNNTTC 1 cut(s) 570
MscI TGGCCA 1 cut(s) 216
MseI TTAA 5 cut(s) 363, 516, 579, 639, 770
MslI CAYNNNNRTG 1 cut(s) 240
Msp20I TGGCCA 1 cut(s) 216
MspR9I CCNGG 2 cut(s) 218, 426
Mva1269I GAATGC 1 cut(s) 786
MvaI CCWGG 2 cut(s) 218, 426
MwoI GCNNNNNNNGC 1 cut(s) 254
NdeII GATC 1 cut(s) 79
NlaIII CATG 4 cut(s) 379, 436, 467, 707
NlaIV GGNNCC 1 cut(s) 906
NmuCI GTSAC 1 cut(s) 223
NspI RCATGY 1 cut(s) 707
NspV TTCGAA 1 cut(s) 616
OliI CACNNNNGTG 1 cut(s) 240
PctI GAATGC 1 cut(s) 786
PdmI GAANNNNTTC 1 cut(s) 570
PfeI GAWTC 2 cut(s) 157, 604
PflMI CCANNNNNTGG 1 cut(s) 338
PkrI GCNGC 4 cut(s) 6, 438, 630, 958
Psp6I CCWGG 2 cut(s) 216, 424
PspGI CCWGG 2 cut(s) 216, 424
PspN4I GGNNCC 1 cut(s) 906
RsaI GTAC 2 cut(s) 405, 460
RsaNI GTAC 2 cut(s) 404, 459
RseI CAYNNNNRTG 1 cut(s) 240
SaqAI TTAA 5 cut(s) 363, 516, 579, 639, 770
SatI GCNGC 4 cut(s) 5, 437, 629, 957
Sau3AI GATC 1 cut(s) 79
ScrFI CCNGG 2 cut(s) 218, 426
SduI GDGCHC 1 cut(s) 937
SfaNI GCATC 1 cut(s) 712
SfuI TTCGAA 1 cut(s) 616
SmiMI CAYNNNNRTG 1 cut(s) 240
Sse9I AATT 7 cut(s) 48, 66, 162, 557, 726, 787, 849
SsiI CCGC 1 cut(s) 5
SspMI CTAG 2 cut(s) 456, 777
StyD4I CCNGG 2 cut(s) 216, 424
TaaI ACNGT 3 cut(s) 182, 502, 676
TaiI ACGT 1 cut(s) 211
TaqI TCGA 2 cut(s) 532, 616
TasI AATT 7 cut(s) 48, 66, 162, 557, 726, 787, 849
TatI WGTACW 1 cut(s) 403
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 2 cut(s) 157, 604
Tru1I TTAA 5 cut(s) 363, 516, 579, 639, 770
Tru9I TTAA 5 cut(s) 363, 516, 579, 639, 770
TscAI CASTG 3 cut(s) 46, 187, 915
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 3 cut(s) 436, 628, 956
Tsp45I GTSAC 1 cut(s) 223
TspDTI ATGAA 3 cut(s) 518, 538, 579
TspRI CASTG 3 cut(s) 46, 187, 915
Van91I CCANNNNNTGG 1 cut(s) 338
XceI RCATGY 1 cut(s) 707
XmnI GAANNNNTTC 1 cut(s) 570
XspI CTAG 2 cut(s) 456, 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.