Rmu_sc0002571.1_g000010
ERF Family

Transducin WD40 repeat-like superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002571.1
OG0022974
Physical Location & Seq
Reverse (-)
58964 .. 60220
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002571.1_g000010.1.cds

Sequence Viewer

Length: 1257 bp
atggaatgtctatatgaaaccaggacattgaaatatggtcaggtatttgtgcaatgttctgaccatgctatcttcaatggcagcactacttcaaccgcaggccaagacaattttactattgagtgcaatgtaattattgctaaaaacccatgtttacactttggagatgagcgttttcttatggatggagtgagtgaggtttctgatcattatgcttggctggactttctaacaagcgaagttccagggacaaaggtaataaaatttacaaaggaaagtcttgctttccagagatattgttcaatggatgcattcggtcccaagaaggaagtcattgctttcgtaggtgagatctataagtattgttctatggttgtggaagcttctatagtactgtggtatttttctcttctatgttctcctttggatagtgatgatttcaggtctgcaatggtcaagttgattcatcacgaggttctccttgtacatgtacaagtcaatccagaattattttctttgaggtaccttaaaaactatctcatgctttactctatatcaaacaaaaacgtacaagaaatcaagatcagtccaggtctcatgttgctgattttcaatagagctagtaccaatattctgctgaagattatgtccatagaagatggcacagttctcaaagcttttaacaacattcttcatcaaaacaaggtgtatatcatagaacaattcaatgaaaagcttcttgttaagcaggaaaatgaaaatctccagattcttgatgttcgaaatgtggagctgctggaagttaatagagctgagttcctgacatcatcatcatttatcattctgtatgagaaccaactattcctgacattcaaaaatagaactgtggccgtctggaatgttttctcaacacatgctccatctacttcagatgcaatttgtttatatgtccagaagcttttcttggttgattgggcttttgcaaatgtaccaatatcttggaaggatatgaaaaccaagttgtttgctcttaatatggttactaaggtactcctacaggaaggtcaaatctgtgatttctcgaccattatgcagttggttgtgattttgtccactaggtctttgaatgaactaaagggaatcatgtgcattctgcatagttcttttgcagacattgatgacccctattctaagtggattttgactcatgtgaaacttgaggacaagttctctgtgaagcagggtggattgttatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

418

Amino Acids

47.91

Weight (kDa)

5.84

Isoelectric Point (pI)

34.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022974)

Species Orthologous Gene IDs
rosa_laevigata RLG00000029498
rosa_multiflora Rmu_sc0000850.1_g000014 Rmu_sc0002571.1_g000010 Rmu_sc0008835.1_g000008

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 522
AccB1I GGYRCC 1 cut(s) 522
AciI CCGC 1 cut(s) 96
AcoI YGGCCR 1 cut(s) 888
AcsI RAATTY 1 cut(s) 263
AcuI CTGAAG 2 cut(s) 659, 912
AfaI GTAC 8 cut(s) 393, 486, 492, 524, 570, 625, 990, 1050
AflIII ACRYGT 1 cut(s) 487
AgsI TTSAA 8 cut(s) 31, 76, 93, 303, 613, 727, 874, 1126
AjnI CCWGG 3 cut(s) 20, 244, 589
AjuI GAANNNNNNNTTGG 2 cut(s) 947, 979
AluBI AGCT 7 cut(s) 383, 620, 677, 736, 793, 812, 958
AluI AGCT 7 cut(s) 383, 620, 677, 736, 793, 812, 958
Alw26I GTCTC 1 cut(s) 599
AoxI GGCC 2 cut(s) 100, 888
ApeKI GCWGC 2 cut(s) 81, 793
ApoI RAATTY 1 cut(s) 263
Asp700I GAANNNNTTC 3 cut(s) 735, 902, 959
Asp718I GGTACC 1 cut(s) 522
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 1 cut(s) 359
AsuII TTCGAA 1 cut(s) 781
AvaII GGWCC 1 cut(s) 317
BanI GGYRCC 1 cut(s) 522
BauI CACGAG 1 cut(s) 470
BbvI GCAGC 2 cut(s) 93, 780
BccI CCATC 3 cut(s) 179, 653, 928
BceAI ACGGC 1 cut(s) 875
BcgI CGANNNNNNTGC 2 cut(s) 1072, 1106
BciT130I CCWGG 3 cut(s) 22, 246, 591
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 599
BfaI CTAG 2 cut(s) 621, 1116
BfmI CTRYAG 2 cut(s) 387, 1055
BglII AGATCT 1 cut(s) 351
BisI GCNGC 2 cut(s) 82, 794
BlsI GCNGC 2 cut(s) 83, 795
BmcAI AGTACT 1 cut(s) 393
Bme1390I CCNGG 3 cut(s) 22, 246, 591
Bme18I GGWCC 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 2 cut(s) 319, 524
BmrFI CCNGG 3 cut(s) 22, 246, 591
BmsI GCATC 2 cut(s) 298, 922
BpmI CTGGAG 1 cut(s) 749
Bpu14I TTCGAA 1 cut(s) 781
BpuEI CTTGAG 1 cut(s) 1238
BsaI GGTCTC 1 cut(s) 599
BsaJI CCNNGG 1 cut(s) 245
BsaXI ACNNNNNCTCC 2 cut(s) 901, 931
Bse3DI GCAATG 4 cut(s) 59, 133, 333, 456
BseBI CCWGG 3 cut(s) 22, 246, 591
BseDI CCNNGG 1 cut(s) 245
BseGI GGATG 2 cut(s) 190, 313
BseMI GCAATG 4 cut(s) 59, 133, 333, 456
BseMII CTCAG 1 cut(s) 804
BseXI GCAGC 2 cut(s) 93, 780
BshFI GGCC 2 cut(s) 102, 890
BshNI GGYRCC 1 cut(s) 522
BslFI GGGAC 2 cut(s) 262, 303
BsmAI GTCTC 1 cut(s) 599
BsmFI GGGAC 2 cut(s) 262, 303
BsmI GAATGC 2 cut(s) 311, 1149
BsnI GGCC 2 cut(s) 102, 890
Bso31I GGTCTC 1 cut(s) 599
Bsp119I TTCGAA 1 cut(s) 781
Bsp1407I TGTACA 2 cut(s) 484, 490
Bsp143I GATC 3 cut(s) 205, 351, 582
BspACI CCGC 1 cut(s) 96
BspANI GGCC 2 cut(s) 102, 890
BspCNI CTCAG 1 cut(s) 805
BspLI GGNNCC 2 cut(s) 319, 524
BspT104I TTCGAA 1 cut(s) 781
BspT107I GGYRCC 1 cut(s) 522
BspTNI GGTCTC 1 cut(s) 599
BsrDI GCAATG 4 cut(s) 59, 133, 333, 456
BsrGI TGTACA 2 cut(s) 484, 490
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 3 cut(s) 205, 351, 582
BssSI CACGAG 1 cut(s) 470
Bst2BI CACGAG 1 cut(s) 470
Bst2UI CCWGG 3 cut(s) 22, 246, 591
Bst4CI ACNGT 3 cut(s) 396, 667, 886
Bst6I CTCTTC 1 cut(s) 414
BstAUI TGTACA 2 cut(s) 484, 490
BstBI TTCGAA 1 cut(s) 781
BstC8I GCNNGC 1 cut(s) 100
BstDEI CTNAG 3 cut(s) 813, 1044, 1191
BstF5I GGATG 2 cut(s) 190, 313
BstKTI GATC 3 cut(s) 208, 354, 585
BstMAI GTCTC 1 cut(s) 599
BstMBI GATC 3 cut(s) 205, 351, 582
BstNI CCWGG 3 cut(s) 22, 246, 591
BstNSI RCATGY 2 cut(s) 491, 917
BstSCI CCNGG 3 cut(s) 20, 244, 589
BstSFI CTRYAG 2 cut(s) 387, 1055
BstV1I GCAGC 2 cut(s) 93, 780
BstX2I RGATCY 1 cut(s) 351
BstXI CCANNNNNNTGG 1 cut(s) 999
BstYI RGATCY 1 cut(s) 351
BsuRI GGCC 2 cut(s) 102, 890
BtsCI GGATG 2 cut(s) 190, 313
Cac8I GCNNGC 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 317
Csp6I GTAC 8 cut(s) 392, 485, 491, 523, 569, 624, 989, 1049
CviAII CATG 8 cut(s) 65, 150, 488, 541, 598, 914, 1144, 1208
CviQI GTAC 8 cut(s) 392, 485, 491, 523, 569, 624, 989, 1049
DdeI CTNAG 3 cut(s) 813, 1044, 1191
DpnI GATC 3 cut(s) 207, 353, 584
DpnII GATC 3 cut(s) 205, 351, 582
EaeI YGGCCR 1 cut(s) 888
Eam1104I CTCTTC 1 cut(s) 414
EarI CTCTTC 1 cut(s) 414
Eco31I GGTCTC 1 cut(s) 599
Eco47I GGWCC 1 cut(s) 317
Eco57I CTGAAG 2 cut(s) 659, 912
EcoRII CCWGG 3 cut(s) 20, 244, 589
EcoT22I ATGCAT 1 cut(s) 313
FaeI CATG 8 cut(s) 68, 153, 491, 544, 601, 917, 1147, 1211
FalI AAGNNNNNCTT 4 cut(s) 268, 300, 947, 979
FaqI GGGAC 2 cut(s) 262, 303
FatI CATG 8 cut(s) 64, 149, 487, 540, 597, 913, 1143, 1207
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 2 cut(s) 82, 794
FokI GGATG 2 cut(s) 197, 320
Fsp4HI GCNGC 2 cut(s) 82, 794
FspBI CTAG 2 cut(s) 621, 1116
GluI GCNGC 2 cut(s) 82, 794
GsuI CTGGAG 1 cut(s) 749
HaeIII GGCC 2 cut(s) 102, 890
Hin1II CATG 8 cut(s) 68, 153, 491, 544, 601, 917, 1147, 1211
HindIII AAGCTT 4 cut(s) 381, 675, 734, 956
HinfI GANTC 4 cut(s) 463, 769, 1140, 1204
HphI GGTGA 1 cut(s) 359
Hpy166II GTNNAC 2 cut(s) 155, 1113
Hpy188I TCNGA 3 cut(s) 61, 205, 931
Hpy8I GTNNAC 2 cut(s) 155, 1113
HpyAV CCTTC 3 cut(s) 319, 997, 1055
HpyCH4III ACNGT 3 cut(s) 396, 667, 886
HpyCH4IV ACGT 1 cut(s) 567
HpyF3I CTNAG 3 cut(s) 813, 1044, 1191
HpySE526I ACGT 1 cut(s) 567
Hsp92II CATG 8 cut(s) 68, 153, 491, 544, 601, 917, 1147, 1211
KpnI GGTACC 1 cut(s) 526
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 3 cut(s) 205, 351, 582
LmnI GCTCC 2 cut(s) 790, 922
Lsp1109I GCAGC 2 cut(s) 93, 780
LweI GCATC 2 cut(s) 298, 922
MaeI CTAG 2 cut(s) 621, 1116
MaeII ACGT 1 cut(s) 567
MaeIII GTNAC 1 cut(s) 1039
MalI GATC 3 cut(s) 207, 353, 584
MboI GATC 3 cut(s) 205, 351, 582
MboII GAAGA 5 cut(s) 64, 401, 652, 668, 683
MflI RGATCY 1 cut(s) 351
MluCI AATT 6 cut(s) 109, 132, 263, 506, 722, 936
MlyI GAGTC 1 cut(s) 1198
MnlI CCTC 4 cut(s) 190, 466, 513, 1213
Mph1103I ATGCAT 1 cut(s) 313
MroXI GAANNNNTTC 3 cut(s) 735, 902, 959
MseI TTAA 5 cut(s) 528, 681, 744, 804, 1032
MspR9I CCNGG 3 cut(s) 22, 246, 591
Mva1269I GAATGC 2 cut(s) 311, 1149
MvaI CCWGG 3 cut(s) 22, 246, 591
NdeII GATC 3 cut(s) 205, 351, 582
NlaIII CATG 8 cut(s) 68, 153, 491, 544, 601, 917, 1147, 1211
NlaIV GGNNCC 2 cut(s) 319, 524
NsiI ATGCAT 1 cut(s) 313
NspI RCATGY 2 cut(s) 491, 917
NspV TTCGAA 1 cut(s) 781
PciI ACATGT 1 cut(s) 487
PctI GAATGC 2 cut(s) 311, 1149
PdmI GAANNNNTTC 3 cut(s) 735, 902, 959
PfeI GAWTC 3 cut(s) 463, 769, 1140
PkrI GCNGC 2 cut(s) 83, 795
PleI GAGTC 1 cut(s) 1198
PpsI GAGTC 1 cut(s) 1198
PscI ACATGT 1 cut(s) 487
Psp6I CCWGG 3 cut(s) 20, 244, 589
PspGI CCWGG 3 cut(s) 20, 244, 589
PspN4I GGNNCC 2 cut(s) 319, 524
PspPI GGNCC 1 cut(s) 317
PsuI RGATCY 1 cut(s) 351
RsaI GTAC 8 cut(s) 393, 486, 492, 524, 570, 625, 990, 1050
RsaNI GTAC 8 cut(s) 392, 485, 491, 523, 569, 624, 989, 1049
SaqAI TTAA 5 cut(s) 528, 681, 744, 804, 1032
SatI GCNGC 2 cut(s) 82, 794
Sau3AI GATC 3 cut(s) 205, 351, 582
Sau96I GGNCC 1 cut(s) 317
ScaI AGTACT 1 cut(s) 393
SchI GAGTC 1 cut(s) 1198
ScrFI CCNGG 3 cut(s) 22, 246, 591
SfaNI GCATC 2 cut(s) 298, 922
SfcI CTRYAG 2 cut(s) 387, 1055
SfuI TTCGAA 1 cut(s) 781
SinI GGWCC 1 cut(s) 317
SmlI CTYRAG 1 cut(s) 1217
SmoI CTYRAG 1 cut(s) 1217
Sse9I AATT 6 cut(s) 109, 132, 263, 506, 722, 936
SsiI CCGC 1 cut(s) 96
SspI AATATT 1 cut(s) 631
SspMI CTAG 2 cut(s) 621, 1116
StyD4I CCNGG 3 cut(s) 20, 244, 589
TaaI ACNGT 3 cut(s) 396, 667, 886
TaiI ACGT 1 cut(s) 570
TaqI TCGA 2 cut(s) 781, 1082
TaqII GACCGA 1 cut(s) 305
TasI AATT 6 cut(s) 109, 132, 263, 506, 722, 936
TatI WGTACW 3 cut(s) 391, 484, 490
TfiI GAWTC 3 cut(s) 463, 769, 1140
Tru1I TTAA 5 cut(s) 528, 681, 744, 804, 1032
Tru9I TTAA 5 cut(s) 528, 681, 744, 804, 1032
TseI GCWGC 2 cut(s) 81, 793
TspDTI ATGAA 7 cut(s) 30, 455, 683, 744, 771, 1025, 1143
VpaK11BI GGWCC 1 cut(s) 317
XapI RAATTY 1 cut(s) 263
XceI RCATGY 2 cut(s) 491, 917
XcmI CCANNNNNNNNNTGG 1 cut(s) 1093
XmnI GAANNNNTTC 3 cut(s) 735, 902, 959
XspI CTAG 2 cut(s) 621, 1116
ZrmI AGTACT 1 cut(s) 393
Zsp2I ATGCAT 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.