RLG00000029606

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0020687
Physical Location & Seq
Reverse (-)
41012191 .. 41013030
840 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029606

Sequence Viewer

Length: 405 bp
ATGTTGGGGAAGAAGGAGATGCTAAAATTGCAAAGAGACTTGCGATTGAGGTCTCTGGTGCATTCAATGGCACCCTGCAGATCGTCCTTCTATGCAAGGGGTGGTTCAGATGTTGGAAGAAGGAGAAAACTTAACCATGCCTCCAAATCCTTTTGCCTCTCAGGGTCCAGCAGGAACAAATACAAACACCTGCAGGTGGTCAAGGCTTTCTATGCCGAGTTTGTTATTGGCCAGGAGTGCTCCTATGCCACTAGCCTGGTTCTAATTAAAGATTTCACACCCATGGATCAAGTGAGAGTTCGATTAAACCTAAAATCAATCACCGTCCACCTCCCACGTCTTGTAAATAGGCCATTAAAACTCCTTCTGAAGGATCTTGTTGTAGCGCTCTGCTGTACTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.3

Weight (kDa)

10.34

Isoelectric Point (pI)

54.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020687)

Species Orthologous Gene IDs
rosa_laevigata RLG00000029606 RLG00000030562 RLG00000030568
rosa_samantha Rh1AG133100 Rh1CG126700 Rh1CG127300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 184, 198
Acc36I ACCTGC 2 cut(s) 184, 198
AccB1I GGYRCC 1 cut(s) 70
AclWI GGATC 2 cut(s) 294, 381
AcoI YGGCCR 1 cut(s) 229
AcuI CTGAAG 1 cut(s) 389
AfaI GTAC 1 cut(s) 397
AfeI AGCGCT 1 cut(s) 387
AfiI CCNNNNNNNGG 2 cut(s) 196, 370
AgsI TTSAA 1 cut(s) 66
AjiI CACGTC 1 cut(s) 338
AjnI CCWGG 2 cut(s) 231, 255
Alw21I GWGCWC 1 cut(s) 242
Alw26I GTCTC 2 cut(s) 30, 57
AlwI GGATC 2 cut(s) 294, 381
Aor51HI AGCGCT 1 cut(s) 387
AoxI GGCC 2 cut(s) 229, 350
AspLEI GCGC 1 cut(s) 388
AspS9I GGNCC 1 cut(s) 165
AsuHPI GGTGA 1 cut(s) 313
AvaII GGWCC 1 cut(s) 165
BalI TGGCCA 1 cut(s) 231
BanI GGYRCC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 242
BciT130I CCWGG 2 cut(s) 233, 257
BcoDI GTCTC 2 cut(s) 30, 57
BfaI CTAG 2 cut(s) 252, 403
BfmI CTRYAG 2 cut(s) 76, 191
BfoI RGCGCY 1 cut(s) 389
BfuAI ACCTGC 2 cut(s) 184, 198
Bme1390I CCNGG 2 cut(s) 233, 257
Bme18I GGWCC 1 cut(s) 165
BmgBI CACGTC 1 cut(s) 338
BmgT120I GGNCC 1 cut(s) 165
BmiI GGNNCC 2 cut(s) 72, 166
BmrFI CCNGG 2 cut(s) 233, 257
BmsI GCATC 1 cut(s) 9
BsaI GGTCTC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 282
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 370
BseBI CCWGG 2 cut(s) 233, 257
BseDI CCNNGG 1 cut(s) 282
BseLI CCNNNNNNNGG 2 cut(s) 196, 370
BseMII CTCAG 1 cut(s) 174
BshFI GGCC 2 cut(s) 231, 352
BshNI GGYRCC 1 cut(s) 70
BsiHKAI GWGCWC 1 cut(s) 242
BslI CCNNNNNNNGG 2 cut(s) 196, 370
BsmAI GTCTC 2 cut(s) 30, 57
BsmI GAATGC 1 cut(s) 61
BsnI GGCC 2 cut(s) 231, 352
Bso31I GGTCTC 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 242
Bsp143I GATC 3 cut(s) 80, 286, 373
Bsp19I CCATGG 1 cut(s) 282
BspANI GGCC 2 cut(s) 231, 352
BspCNI CTCAG 1 cut(s) 173
BspLI GGNNCC 2 cut(s) 72, 166
BspMAI CTGCAG 2 cut(s) 80, 195
BspMI ACCTGC 2 cut(s) 184, 198
BspPI GGATC 2 cut(s) 294, 381
BspT107I GGYRCC 1 cut(s) 70
BspTNI GGTCTC 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 282
BssMI GATC 3 cut(s) 80, 286, 373
BssT1I CCWWGG 1 cut(s) 282
Bst2UI CCWGG 2 cut(s) 233, 257
Bst4CI ACNGT 1 cut(s) 325
BstDEI CTNAG 1 cut(s) 160
BstDSI CCRYGG 1 cut(s) 282
BstENI CCTNNNNNAGG 1 cut(s) 368
BstH2I RGCGCY 1 cut(s) 389
BstHHI GCGC 1 cut(s) 388
BstKTI GATC 3 cut(s) 83, 289, 376
BstMAI GTCTC 2 cut(s) 30, 57
BstMBI GATC 3 cut(s) 80, 286, 373
BstMWI GCNNNNNNNGC 3 cut(s) 28, 212, 237
BstNI CCWGG 2 cut(s) 233, 257
BstSCI CCNGG 2 cut(s) 231, 255
BstSFI CTRYAG 2 cut(s) 76, 191
BstX2I RGATCY 1 cut(s) 373
BstXI CCANNNNNNTGG 1 cut(s) 256
BstYI RGATCY 1 cut(s) 373
BsuRI GGCC 2 cut(s) 231, 352
BtgI CCRYGG 1 cut(s) 282
BtrI CACGTC 1 cut(s) 338
BveI ACCTGC 2 cut(s) 184, 198
CfoI GCGC 1 cut(s) 388
Cfr13I GGNCC 1 cut(s) 165
Csp6I GTAC 1 cut(s) 396
CviAII CATG 2 cut(s) 137, 283
CviJI RGCY 4 cut(s) 206, 231, 255, 352
CviKI_1 RGCY 4 cut(s) 206, 231, 255, 352
CviQI GTAC 1 cut(s) 396
DdeI CTNAG 1 cut(s) 160
DpnI GATC 3 cut(s) 82, 288, 375
DpnII GATC 3 cut(s) 80, 286, 373
EaeI YGGCCR 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 282
Eco31I GGTCTC 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 165
Eco47III AGCGCT 1 cut(s) 387
Eco57I CTGAAG 1 cut(s) 389
EcoNI CCTNNNNNAGG 1 cut(s) 368
EcoRII CCWGG 2 cut(s) 231, 255
EcoT14I CCWWGG 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 2 cut(s) 140, 286
FaiI YATR 5 cut(s) 93, 138, 213, 246, 284
FatI CATG 2 cut(s) 136, 282
FspBI CTAG 2 cut(s) 252, 403
GlaI GCGC 1 cut(s) 387
HaeII RGCGCY 1 cut(s) 389
HaeIII GGCC 2 cut(s) 231, 352
HhaI GCGC 1 cut(s) 388
Hin1II CATG 2 cut(s) 140, 286
Hin6I GCGC 1 cut(s) 386
HinP1I GCGC 1 cut(s) 386
HphI GGTGA 1 cut(s) 313
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 2 cut(s) 109, 369
Hpy8I GTNNAC 1 cut(s) 328
HpyAV CCTTC 5 cut(s) 7, 97, 114, 364, 374
HpyCH4III ACNGT 1 cut(s) 325
HpyCH4IV ACGT 1 cut(s) 337
HpyCH4V TGCA 5 cut(s) 31, 61, 78, 95, 193
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 212, 237
HpyF3I CTNAG 1 cut(s) 160
HpySE526I ACGT 1 cut(s) 337
Hsp92II CATG 2 cut(s) 140, 286
HspAI GCGC 1 cut(s) 386
Kzo9I GATC 3 cut(s) 80, 286, 373
LmnI GCTCC 1 cut(s) 245
LweI GCATC 1 cut(s) 9
MaeI CTAG 2 cut(s) 252, 403
MaeII ACGT 1 cut(s) 337
MalI GATC 3 cut(s) 82, 288, 375
MboI GATC 3 cut(s) 80, 286, 373
MboII GAAGA 2 cut(s) 22, 129
MflI RGATCY 1 cut(s) 373
MhlI GDGCHC 1 cut(s) 242
MlsI TGGCCA 1 cut(s) 231
MluCI AATT 2 cut(s) 26, 264
MluNI TGGCCA 1 cut(s) 231
MmeI TCCRAC 1 cut(s) 94
MnlI CCTC 4 cut(s) 42, 151, 167, 341
Mox20I TGGCCA 1 cut(s) 231
MscI TGGCCA 1 cut(s) 231
MseI TTAA 4 cut(s) 132, 267, 305, 356
MslI CAYNNNNRTG 1 cut(s) 281
Msp20I TGGCCA 1 cut(s) 231
MspR9I CCNGG 2 cut(s) 233, 257
Mva1269I GAATGC 1 cut(s) 61
MvaI CCWGG 2 cut(s) 233, 257
MwoI GCNNNNNNNGC 3 cut(s) 28, 212, 237
NcoI CCATGG 1 cut(s) 282
NdeII GATC 3 cut(s) 80, 286, 373
NlaIII CATG 2 cut(s) 140, 286
NlaIV GGNNCC 2 cut(s) 72, 166
NmeAIII GCCGAG 1 cut(s) 241
PaqCI CACCTGC 2 cut(s) 184, 198
PctI GAATGC 1 cut(s) 61
Psp6I CCWGG 2 cut(s) 231, 255
PspGI CCWGG 2 cut(s) 231, 255
PspN4I GGNNCC 2 cut(s) 72, 166
PspPI GGNCC 1 cut(s) 165
PstI CTGCAG 2 cut(s) 80, 195
PsuI RGATCY 1 cut(s) 373
RsaI GTAC 1 cut(s) 397
RsaNI GTAC 1 cut(s) 396
RseI CAYNNNNRTG 1 cut(s) 281
SaqAI TTAA 4 cut(s) 132, 267, 305, 356
Sau3AI GATC 3 cut(s) 80, 286, 373
Sau96I GGNCC 1 cut(s) 165
SbfI CCTGCAGG 1 cut(s) 195
ScrFI CCNGG 2 cut(s) 233, 257
SdaI CCTGCAGG 1 cut(s) 195
SduI GDGCHC 1 cut(s) 242
SetI ASST 6 cut(s) 53, 192, 198, 312, 333, 340
SfaNI GCATC 1 cut(s) 9
SfcI CTRYAG 2 cut(s) 76, 191
SinI GGWCC 1 cut(s) 165
SmiMI CAYNNNNRTG 1 cut(s) 281
Sse8387I CCTGCAGG 1 cut(s) 195
Sse9I AATT 2 cut(s) 26, 264
SspMI CTAG 2 cut(s) 252, 403
StyD4I CCNGG 2 cut(s) 231, 255
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 1 cut(s) 325
TaiI ACGT 1 cut(s) 340
TaqI TCGA 1 cut(s) 301
TasI AATT 2 cut(s) 26, 264
TatI WGTACW 1 cut(s) 395
Tru1I TTAA 4 cut(s) 132, 267, 305, 356
Tru9I TTAA 4 cut(s) 132, 267, 305, 356
VpaK11BI GGWCC 1 cut(s) 165
XagI CCTNNNNNAGG 1 cut(s) 368
XspI CTAG 2 cut(s) 252, 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.