Rh1CG127300

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0020687
Physical Location & Seq
Forward (+)
28055809 .. 28058337
2529 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG127300.1

Sequence Viewer

Length: 420 bp
ATGATCCATTGCCAGGGTCAATGGGATTTCTATGGAACATGTTATCCGCGCAGCATCCCAGGTTTCCTTCTACTTGGGTTGACGCTGATAATCGGTTTTGGTTATCAATACTGCATTCATATCGCCGCCGGTATTGTAGGGGCAAAACTTATATTTGGAGGTCCATTTGTGATTGCACTTCTGATATATAAGTGGCGAAGAAGACATTGGTCAACCTACAATACTATAGAAGATTTTTTGCATAGTGACAATTTCATGCCTATAAGTATTGACAAGAGTCCTAGGATTGAACTACCCAATGGAGTAGAAATTAAGCAGAATAAGAGCAAGAGGGAAATTACCGGCATTGCCAGAGCCGACGAAGAGAACTGGAGAGGAGGTGAGGGGAATGAAGCTGCGGATGAAAGGGCGGAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

139

Amino Acids

15.83

Weight (kDa)

6.9

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020687)

Species Orthologous Gene IDs
rosa_laevigata RLG00000029606 RLG00000030562 RLG00000030568
rosa_samantha Rh1AG133100 Rh1CG126700 Rh1CG127300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 49
AciI CCGC 4 cut(s) 47, 126, 398, 410
AfiI CCNNNNNNNGG 1 cut(s) 13
AflIII ACRYGT 1 cut(s) 38
AgsI TTSAA 1 cut(s) 290
AjnI CCWGG 2 cut(s) 12, 58
AjuI GAANNNNNNNTTGG 2 cut(s) 190, 222
AloI GAACNNNNNNTCC 2 cut(s) 28, 60
AluBI AGCT 1 cut(s) 395
AluI AGCT 1 cut(s) 395
ApeKI GCWGC 2 cut(s) 51, 395
AspA2I CCTAGG 1 cut(s) 281
AspLEI GCGC 1 cut(s) 51
AspS9I GGNCC 1 cut(s) 161
AsuHPI GGTGA 1 cut(s) 392
AvaII GGWCC 1 cut(s) 161
AvrII CCTAGG 1 cut(s) 281
BbsI GAAGAC 1 cut(s) 208
BbvI GCAGC 2 cut(s) 63, 382
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 2 cut(s) 14, 60
BfaI CTAG 1 cut(s) 282
BfmI CTRYAG 1 cut(s) 225
BisI GCNGC 3 cut(s) 52, 126, 396
BlnI CCTAGG 1 cut(s) 281
BlsI GCNGC 3 cut(s) 53, 127, 397
Bme1390I CCNGG 2 cut(s) 14, 60
Bme18I GGWCC 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 161
BmrFI CCNGG 2 cut(s) 14, 60
BmsI GCATC 1 cut(s) 63
BoxI GACNNNNGTC 2 cut(s) 208, 276
BpiI GAAGAC 1 cut(s) 208
BpmI CTGGAG 1 cut(s) 391
BsaJI CCNNGG 3 cut(s) 13, 58, 281
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
Bsc4I CCNNNNNNNGG 1 cut(s) 13
Bse118I RCCGGY 2 cut(s) 128, 341
Bse1I ACTGG 1 cut(s) 374
Bse3DI GCAATG 2 cut(s) 7, 345
BseBI CCWGG 2 cut(s) 14, 60
BseDI CCNNGG 3 cut(s) 13, 58, 281
BseGI GGATG 2 cut(s) 54, 406
BseLI CCNNNNNNNGG 1 cut(s) 13
BseMI GCAATG 2 cut(s) 7, 345
BseNI ACTGG 1 cut(s) 374
BseRI GAGGAG 1 cut(s) 390
BseXI GCAGC 2 cut(s) 63, 382
Bsh1236I CGCG 1 cut(s) 49
BsiSI CCGG 2 cut(s) 129, 342
BslI CCNNNNNNNGG 1 cut(s) 13
BsmI GAATGC 1 cut(s) 114
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 4 cut(s) 47, 126, 398, 410
BspFNI CGCG 1 cut(s) 49
BsrDI GCAATG 2 cut(s) 7, 345
BsrFI RCCGGY 2 cut(s) 128, 341
BsrI ACTGG 1 cut(s) 374
BssAI RCCGGY 2 cut(s) 128, 341
BssECI CCNNGG 3 cut(s) 13, 58, 281
BssMI GATC 1 cut(s) 3
BssT1I CCWWGG 1 cut(s) 281
Bst2UI CCWGG 2 cut(s) 14, 60
Bst6I CTCTTC 1 cut(s) 357
BstF5I GGATG 2 cut(s) 54, 406
BstFNI CGCG 1 cut(s) 49
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstNI CCWGG 2 cut(s) 14, 60
BstNSI RCATGY 1 cut(s) 42
BstPAI GACNNNNGTC 2 cut(s) 208, 276
BstSCI CCNGG 2 cut(s) 12, 58
BstSFI CTRYAG 1 cut(s) 225
BstUI CGCG 1 cut(s) 49
BstV1I GCAGC 2 cut(s) 63, 382
BstV2I GAAGAC 1 cut(s) 208
BtsCI GGATG 2 cut(s) 54, 406
CfoI GCGC 1 cut(s) 51
Cfr10I RCCGGY 2 cut(s) 128, 341
Cfr13I GGNCC 1 cut(s) 161
CseI GACGC 1 cut(s) 91
CviAII CATG 2 cut(s) 39, 256
CviJI RGCY 2 cut(s) 356, 395
CviKI_1 RGCY 2 cut(s) 356, 395
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
Eco130I CCWWGG 1 cut(s) 281
Eco47I GGWCC 1 cut(s) 161
EcoRII CCWGG 2 cut(s) 12, 58
EcoT14I CCWWGG 1 cut(s) 281
ErhI CCWWGG 1 cut(s) 281
FaeI CATG 2 cut(s) 42, 259
FatI CATG 2 cut(s) 38, 255
Fnu4HI GCNGC 3 cut(s) 52, 126, 396
FokI GGATG 2 cut(s) 41, 413
Fsp4HI GCNGC 3 cut(s) 52, 126, 396
FspBI CTAG 1 cut(s) 282
GlaI GCGC 1 cut(s) 50
GluI GCNGC 3 cut(s) 52, 126, 396
GsuI CTGGAG 1 cut(s) 391
HapII CCGG 2 cut(s) 129, 342
HgaI GACGC 1 cut(s) 91
HhaI GCGC 1 cut(s) 51
Hin1II CATG 2 cut(s) 42, 259
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HincII GTYRAC 2 cut(s) 81, 213
HindII GTYRAC 2 cut(s) 81, 213
HinfI GANTC 1 cut(s) 277
HpaII CCGG 2 cut(s) 129, 342
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 2 cut(s) 81, 213
Hpy188I TCNGA 1 cut(s) 183
Hpy8I GTNNAC 2 cut(s) 81, 213
Hpy99I CGWCG 1 cut(s) 362
HpyAV CCTTC 1 cut(s) 77
HpyCH4V TGCA 3 cut(s) 114, 176, 241
Hsp92II CATG 2 cut(s) 42, 259
HspAI GCGC 1 cut(s) 49
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 7 cut(s) 26, 45, 72, 142, 355, 355, 364
Lsp1109I GCAGC 2 cut(s) 63, 382
LweI GCATC 1 cut(s) 63
MaeI CTAG 1 cut(s) 282
MaeIII GTNAC 1 cut(s) 245
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 4 cut(s) 210, 213, 242, 374
MluCI AATT 3 cut(s) 250, 309, 336
MlyI GAGTC 1 cut(s) 286
MnlI CCTC 5 cut(s) 152, 324, 368, 371, 376
MseI TTAA 1 cut(s) 312
MspI CCGG 2 cut(s) 129, 342
MspR9I CCNGG 2 cut(s) 14, 60
Mva1269I GAATGC 1 cut(s) 114
MvaI CCWGG 2 cut(s) 14, 60
MvnI CGCG 1 cut(s) 49
NdeII GATC 1 cut(s) 3
NlaIII CATG 2 cut(s) 42, 259
NmuCI GTSAC 1 cut(s) 245
NspI RCATGY 1 cut(s) 42
PciI ACATGT 1 cut(s) 38
PctI GAATGC 1 cut(s) 114
PkrI GCNGC 3 cut(s) 53, 127, 397
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
PscI ACATGT 1 cut(s) 38
PshAI GACNNNNGTC 2 cut(s) 208, 276
Psp6I CCWGG 2 cut(s) 12, 58
PspGI CCWGG 2 cut(s) 12, 58
PspPI GGNCC 1 cut(s) 161
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 3 cut(s) 52, 126, 396
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 161
SchI GAGTC 1 cut(s) 286
ScrFI CCNGG 2 cut(s) 14, 60
SetI ASST 5 cut(s) 64, 163, 218, 382, 397
SfaNI GCATC 1 cut(s) 63
SfcI CTRYAG 1 cut(s) 225
SinI GGWCC 1 cut(s) 161
Sse9I AATT 3 cut(s) 250, 309, 336
SsiI CCGC 4 cut(s) 47, 126, 398, 410
SspMI CTAG 1 cut(s) 282
StyD4I CCNGG 2 cut(s) 12, 58
StyI CCWWGG 1 cut(s) 281
TasI AATT 3 cut(s) 250, 309, 336
TauI GCSGC 1 cut(s) 128
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 2 cut(s) 51, 395
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 4 cut(s) 107, 244, 405, 417
VpaK11BI GGWCC 1 cut(s) 161
XceI RCATGY 1 cut(s) 42
XmaJI CCTAGG 1 cut(s) 281
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.