Rh1AG133100

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0020687
Physical Location & Seq
Forward (+)
25553101 .. 25555715
2615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG133100.1

Sequence Viewer

Length: 567 bp
ATGTCCCTGGAAGATGTGGAGAATGGGTGCAGTATAGATTGGATGGGTATGATCACTTCGATGCACGGAAAGGACCGAAACATTTCCTATCAAGATATACACAATGAACTCGTGTATGGCTTTGAGCTTCAGTATTCTAGTTTCGGCATGATCCATTGCCAGGGTCAATGGGATTTCTATGGAACATGTTATCCGCGCAGCATCCCAGGTTTCCTTCTACTTGGGTTGACGCTGATAATCGGTTTTGGTTATCAATACTGCATTCATATCGCCGCCGGTATTGTAGGGGCAAAACTTATATTTGGAGGTCCATTTGTGATTGCACTTCTGATATATAAGTGGCGAAGAAGACATTGGTCAACCTACAATACTATAGAAGATTTTTTGCATAGTGACAATTTCATGCCTATAAGTATTGACAAGAGTCCTAGGATTGAACTACCCAATGGAGTAGAAATTAAGCAGAATAAGAGCAAGAGGGAAATTACCGGCATTGCCAGAGCCGACGAAGAGAACTGGAGAGGAGGTGAGGGGAATGAAGCTGCGGATGAAAGGGCGGAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

188

Amino Acids

21.46

Weight (kDa)

5.5

Isoelectric Point (pI)

47.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020687)

Species Orthologous Gene IDs
rosa_laevigata RLG00000029606 RLG00000030562 RLG00000030568
rosa_samantha Rh1AG133100 Rh1CG126700 Rh1CG127300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 196
AciI CCGC 4 cut(s) 194, 273, 545, 557
AclWI GGATC 1 cut(s) 145
AcuI CTGAAG 1 cut(s) 113
AfiI CCNNNNNNNGG 1 cut(s) 160
AflIII ACRYGT 1 cut(s) 185
AgsI TTSAA 1 cut(s) 437
AjnI CCWGG 3 cut(s) 6, 159, 205
AjuI GAANNNNNNNTTGG 2 cut(s) 337, 369
AloI GAACNNNNNNTCC 2 cut(s) 175, 207
AluBI AGCT 2 cut(s) 127, 542
AluI AGCT 2 cut(s) 127, 542
AlwI GGATC 1 cut(s) 145
ApeKI GCWGC 2 cut(s) 198, 542
Asp700I GAANNNNTTC 1 cut(s) 82
AspA2I CCTAGG 1 cut(s) 428
AspLEI GCGC 1 cut(s) 198
AspS9I GGNCC 2 cut(s) 73, 308
AsuHPI GGTGA 1 cut(s) 539
AvaII GGWCC 2 cut(s) 73, 308
AvrII CCTAGG 1 cut(s) 428
BarI GAAGNNNNNNTAC 2 cut(s) 40, 72
BauI CACGAG 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 355
BbvI GCAGC 2 cut(s) 210, 529
BccI CCATC 1 cut(s) 37
BcgI CGANNNNNNTGC 2 cut(s) 250, 284
BciT130I CCWGG 3 cut(s) 8, 161, 207
BclI TGATCA 1 cut(s) 51
BfaI CTAG 2 cut(s) 138, 429
BfmI CTRYAG 1 cut(s) 372
BisI GCNGC 3 cut(s) 199, 273, 543
BlnI CCTAGG 1 cut(s) 428
BlsI GCNGC 3 cut(s) 200, 274, 544
Bme1390I CCNGG 3 cut(s) 8, 161, 207
Bme18I GGWCC 2 cut(s) 73, 308
BmgT120I GGNCC 2 cut(s) 73, 308
BmrFI CCNGG 3 cut(s) 8, 161, 207
BmsI GCATC 2 cut(s) 51, 210
BoxI GACNNNNGTC 2 cut(s) 355, 423
BpiI GAAGAC 1 cut(s) 355
BpmI CTGGAG 1 cut(s) 538
BsaJI CCNNGG 4 cut(s) 6, 160, 205, 428
BsaXI ACNNNNNCTCC 4 cut(s) 11, 41, 511, 541
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse118I RCCGGY 2 cut(s) 275, 488
Bse1I ACTGG 1 cut(s) 521
Bse3DI GCAATG 2 cut(s) 154, 492
BseBI CCWGG 3 cut(s) 8, 161, 207
BseDI CCNNGG 4 cut(s) 6, 160, 205, 428
BseGI GGATG 3 cut(s) 48, 201, 553
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMI GCAATG 2 cut(s) 154, 492
BseNI ACTGG 1 cut(s) 521
BseRI GAGGAG 1 cut(s) 537
BseXI GCAGC 2 cut(s) 210, 529
BsgI GTGCAG 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 196
BsiSI CCGG 2 cut(s) 276, 489
BslI CCNNNNNNNGG 1 cut(s) 160
BsmI GAATGC 1 cut(s) 261
Bsp143I GATC 2 cut(s) 51, 150
BspACI CCGC 4 cut(s) 194, 273, 545, 557
BspFNI CGCG 1 cut(s) 196
BspPI GGATC 1 cut(s) 145
BsrDI GCAATG 2 cut(s) 154, 492
BsrFI RCCGGY 2 cut(s) 275, 488
BsrI ACTGG 1 cut(s) 521
BssAI RCCGGY 2 cut(s) 275, 488
BssECI CCNNGG 4 cut(s) 6, 160, 205, 428
BssMI GATC 2 cut(s) 51, 150
BssSI CACGAG 1 cut(s) 110
BssT1I CCWWGG 1 cut(s) 428
Bst2BI CACGAG 1 cut(s) 110
Bst2UI CCWGG 3 cut(s) 8, 161, 207
Bst6I CTCTTC 1 cut(s) 504
BstF5I GGATG 3 cut(s) 48, 201, 553
BstFNI CGCG 1 cut(s) 196
BstHHI GCGC 1 cut(s) 198
BstKTI GATC 2 cut(s) 54, 153
BstMBI GATC 2 cut(s) 51, 150
BstNI CCWGG 3 cut(s) 8, 161, 207
BstNSI RCATGY 1 cut(s) 189
BstPAI GACNNNNGTC 2 cut(s) 355, 423
BstSCI CCNGG 3 cut(s) 6, 159, 205
BstSFI CTRYAG 1 cut(s) 372
BstUI CGCG 1 cut(s) 196
BstV1I GCAGC 2 cut(s) 210, 529
BstV2I GAAGAC 1 cut(s) 355
BtsCI GGATG 3 cut(s) 48, 201, 553
CfoI GCGC 1 cut(s) 198
Cfr10I RCCGGY 2 cut(s) 275, 488
Cfr13I GGNCC 2 cut(s) 73, 308
CseI GACGC 1 cut(s) 238
CviAII CATG 3 cut(s) 148, 186, 403
CviJI RGCY 4 cut(s) 120, 127, 503, 542
CviKI_1 RGCY 4 cut(s) 120, 127, 503, 542
DpnI GATC 2 cut(s) 53, 152
DpnII GATC 2 cut(s) 51, 150
Eam1104I CTCTTC 1 cut(s) 504
EarI CTCTTC 1 cut(s) 504
Eco130I CCWWGG 1 cut(s) 428
Eco47I GGWCC 2 cut(s) 73, 308
Eco57I CTGAAG 1 cut(s) 113
EcoRII CCWGG 3 cut(s) 6, 159, 205
EcoT14I CCWWGG 1 cut(s) 428
ErhI CCWWGG 1 cut(s) 428
FaeI CATG 3 cut(s) 151, 189, 406
FatI CATG 3 cut(s) 147, 185, 402
FbaI TGATCA 1 cut(s) 51
Fnu4HI GCNGC 3 cut(s) 199, 273, 543
FokI GGATG 3 cut(s) 55, 188, 560
Fsp4HI GCNGC 3 cut(s) 199, 273, 543
FspBI CTAG 2 cut(s) 138, 429
GlaI GCGC 1 cut(s) 197
GluI GCNGC 3 cut(s) 199, 273, 543
GsuI CTGGAG 1 cut(s) 538
HapII CCGG 2 cut(s) 276, 489
HgaI GACGC 1 cut(s) 238
HhaI GCGC 1 cut(s) 198
Hin1II CATG 3 cut(s) 151, 189, 406
Hin6I GCGC 1 cut(s) 196
HinP1I GCGC 1 cut(s) 196
HincII GTYRAC 2 cut(s) 228, 360
HindII GTYRAC 2 cut(s) 228, 360
HinfI GANTC 1 cut(s) 424
HpaII CCGG 2 cut(s) 276, 489
HphI GGTGA 1 cut(s) 539
Hpy166II GTNNAC 2 cut(s) 228, 360
Hpy188I TCNGA 1 cut(s) 330
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 2 cut(s) 228, 360
Hpy99I CGWCG 1 cut(s) 509
HpyAV CCTTC 1 cut(s) 224
HpyCH4V TGCA 5 cut(s) 30, 64, 261, 323, 388
Hsp92II CATG 3 cut(s) 151, 189, 406
HspAI GCGC 1 cut(s) 196
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 2 cut(s) 51, 150
LpnPI CCDG 9 cut(s) 20, 146, 173, 192, 219, 289, 502, 502, 511
Lsp1109I GCAGC 2 cut(s) 210, 529
LweI GCATC 2 cut(s) 51, 210
MaeI CTAG 2 cut(s) 138, 429
MaeIII GTNAC 1 cut(s) 392
MalI GATC 2 cut(s) 53, 152
MboI GATC 2 cut(s) 51, 150
MboII GAAGA 5 cut(s) 23, 357, 360, 389, 521
MluCI AATT 3 cut(s) 397, 456, 483
MlyI GAGTC 1 cut(s) 433
MnlI CCTC 5 cut(s) 299, 471, 515, 518, 523
MroXI GAANNNNTTC 1 cut(s) 82
MseI TTAA 1 cut(s) 459
MslI CAYNNNNRTG 1 cut(s) 59
MspI CCGG 2 cut(s) 276, 489
MspR9I CCNGG 3 cut(s) 8, 161, 207
Mva1269I GAATGC 1 cut(s) 261
MvaI CCWGG 3 cut(s) 8, 161, 207
MvnI CGCG 1 cut(s) 196
NdeII GATC 2 cut(s) 51, 150
NlaIII CATG 3 cut(s) 151, 189, 406
NmuCI GTSAC 1 cut(s) 392
NspI RCATGY 1 cut(s) 189
PciI ACATGT 1 cut(s) 185
PctI GAATGC 1 cut(s) 261
PdmI GAANNNNTTC 1 cut(s) 82
PkrI GCNGC 3 cut(s) 200, 274, 544
PleI GAGTC 1 cut(s) 432
PpsI GAGTC 1 cut(s) 432
PscI ACATGT 1 cut(s) 185
PshAI GACNNNNGTC 2 cut(s) 355, 423
Psp6I CCWGG 3 cut(s) 6, 159, 205
PspGI CCWGG 3 cut(s) 6, 159, 205
PspPI GGNCC 2 cut(s) 73, 308
RseI CAYNNNNRTG 1 cut(s) 59
SaqAI TTAA 1 cut(s) 459
SatI GCNGC 3 cut(s) 199, 273, 543
Sau3AI GATC 2 cut(s) 51, 150
Sau96I GGNCC 2 cut(s) 73, 308
SchI GAGTC 1 cut(s) 433
ScrFI CCNGG 3 cut(s) 8, 161, 207
SetI ASST 6 cut(s) 129, 211, 310, 365, 529, 544
SfaNI GCATC 2 cut(s) 51, 210
SfcI CTRYAG 1 cut(s) 372
SinI GGWCC 2 cut(s) 73, 308
SmiMI CAYNNNNRTG 1 cut(s) 59
Sse9I AATT 3 cut(s) 397, 456, 483
SsiI CCGC 4 cut(s) 194, 273, 545, 557
SspMI CTAG 2 cut(s) 138, 429
StyD4I CCNGG 3 cut(s) 6, 159, 205
StyI CCWWGG 1 cut(s) 428
TaqI TCGA 1 cut(s) 59
TaqII GACCGA 1 cut(s) 90
TasI AATT 3 cut(s) 397, 456, 483
TauI GCSGC 1 cut(s) 275
Tru1I TTAA 1 cut(s) 459
Tru9I TTAA 1 cut(s) 459
TseFI GTSAC 1 cut(s) 392
TseI GCWGC 2 cut(s) 198, 542
Tsp45I GTSAC 1 cut(s) 392
TspDTI ATGAA 5 cut(s) 120, 254, 391, 552, 564
TspGWI ACGGA 1 cut(s) 81
VpaK11BI GGWCC 2 cut(s) 73, 308
XceI RCATGY 1 cut(s) 189
XmaJI CCTAGG 1 cut(s) 428
XmnI GAANNNNTTC 1 cut(s) 82
XspI CTAG 2 cut(s) 138, 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.