Rh1CG126700

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0020687
Physical Location & Seq
Forward (+)
27947474 .. 27971217
23744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG126700.1

Sequence Viewer

Length: 498 bp
ATGGCACCCTGCAGATCGTCCTTCTATGCAAGGGGTGGTTCAGATGTTGGAAGAAGGAGAAAGCTTAACCATCCCTCCGAATCCTTTTGCCTCTCATGGTCCAGCAGGAACAAATACGAGCACACCTTCAAGAAATTTAAGTCTCCAACTAGAAGTAATTCTTTCGGTTGCCGCGGTCAATGGAGTTACACTGATCGGTACGGATATGAAGAATGTTATTCGCGCAGCATCCAAGGTCTCTTTGACCTTGGGTTGACGGTGTTAATCGAACGTGGTCATCTTTACTTGGATCTTATCGTTGCTGCCAGTGTTGTAGGGGTAAAACTTATATTTGGAGGTCCGTTTGTGATTGCACTTCTGATATACAAGTGGCGAAGAAGACATTGGTCAACCTACAACACTATCGAAGATTTTCTGCATAGTGACAATTTCATGCCTATAAGTTGTCCTGAGAATTATGAAAGCAGTCCATCAGTATTGGGAATCAACATGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr

Protein Analysis

165

Amino Acids

19.04

Weight (kDa)

9.28

Isoelectric Point (pI)

66.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020687)

Species Orthologous Gene IDs
rosa_laevigata RLG00000029606 RLG00000030562 RLG00000030568
rosa_samantha Rh1AG133100 Rh1CG126700 Rh1CG127300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 2 cut(s) 174, 223
AciI CCGC 2 cut(s) 172, 174
AclWI GGATC 1 cut(s) 297
AcsI RAATTY 1 cut(s) 134
AfaI GTAC 1 cut(s) 200
AgsI TTSAA 1 cut(s) 130
AjuI GAANNNNNNNTTGG 2 cut(s) 367, 399
AluBI AGCT 1 cut(s) 64
AluI AGCT 1 cut(s) 64
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 2 cut(s) 147, 242
AlwI GGATC 1 cut(s) 297
ApeKI GCWGC 2 cut(s) 225, 302
ApoI RAATTY 1 cut(s) 134
Asp700I GAANNNNTTC 2 cut(s) 157, 411
AspLEI GCGC 1 cut(s) 225
AspS9I GGNCC 2 cut(s) 99, 338
AvaII GGWCC 2 cut(s) 99, 338
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 385
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 237, 289
BccI CCATC 2 cut(s) 78, 478
BcoDI GTCTC 2 cut(s) 147, 242
BfaI CTAG 1 cut(s) 150
BfmI CTRYAG 1 cut(s) 10
BisI GCNGC 3 cut(s) 172, 226, 303
BlsI GCNGC 3 cut(s) 173, 227, 304
Bme18I GGWCC 2 cut(s) 99, 338
BmgT120I GGNCC 2 cut(s) 99, 338
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 237
BoxI GACNNNNGTC 1 cut(s) 385
BpiI GAAGAC 1 cut(s) 385
BsaI GGTCTC 1 cut(s) 242
BsaJI CCNNGG 3 cut(s) 172, 232, 247
BsaXI ACNNNNNCTCC 2 cut(s) 59, 89
Bse1I ACTGG 1 cut(s) 306
BseDI CCNNGG 3 cut(s) 172, 232, 247
BseGI GGATG 2 cut(s) 70, 228
BseMII CTCAG 1 cut(s) 441
BseNI ACTGG 1 cut(s) 306
BseXI GCAGC 2 cut(s) 237, 289
Bsh1236I CGCG 2 cut(s) 174, 223
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 123
BsmAI GTCTC 2 cut(s) 147, 242
Bso31I GGTCTC 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 3 cut(s) 14, 193, 289
BspACI CCGC 2 cut(s) 172, 174
BspCNI CTCAG 1 cut(s) 442
BspFNI CGCG 2 cut(s) 174, 223
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 14
BspPI GGATC 1 cut(s) 297
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 242
BsrI ACTGG 1 cut(s) 306
BssECI CCNNGG 3 cut(s) 172, 232, 247
BssMI GATC 3 cut(s) 14, 193, 289
BssT1I CCWWGG 2 cut(s) 232, 247
Bst4CI ACNGT 1 cut(s) 259
BstDEI CTNAG 1 cut(s) 450
BstDSI CCRYGG 1 cut(s) 172
BstF5I GGATG 2 cut(s) 70, 228
BstFNI CGCG 2 cut(s) 174, 223
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 3 cut(s) 17, 196, 292
BstMAI GTCTC 2 cut(s) 147, 242
BstMBI GATC 3 cut(s) 14, 193, 289
BstPAI GACNNNNGTC 1 cut(s) 385
BstSFI CTRYAG 1 cut(s) 10
BstUI CGCG 2 cut(s) 174, 223
BstV1I GCAGC 2 cut(s) 237, 289
BstV2I GAAGAC 1 cut(s) 385
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BtgI CCRYGG 1 cut(s) 172
BtsCI GGATG 2 cut(s) 70, 228
BtsIMutI CAGTG 2 cut(s) 189, 313
CfoI GCGC 1 cut(s) 225
Cfr13I GGNCC 2 cut(s) 99, 338
Cfr42I CCGCGG 1 cut(s) 175
Csp6I GTAC 1 cut(s) 199
CviAII CATG 3 cut(s) 96, 433, 490
CviJI RGCY 1 cut(s) 64
CviKI_1 RGCY 1 cut(s) 64
CviQI GTAC 1 cut(s) 199
DdeI CTNAG 1 cut(s) 450
DpnI GATC 3 cut(s) 16, 195, 291
DpnII GATC 3 cut(s) 14, 193, 289
Eco130I CCWWGG 2 cut(s) 232, 247
Eco31I GGTCTC 1 cut(s) 242
Eco47I GGWCC 2 cut(s) 99, 338
EcoT14I CCWWGG 2 cut(s) 232, 247
ErhI CCWWGG 2 cut(s) 232, 247
FaeI CATG 3 cut(s) 99, 436, 493
FalI AAGNNNNNCTT 2 cut(s) 145, 177
FatI CATG 3 cut(s) 95, 432, 489
Fnu4HI GCNGC 3 cut(s) 172, 226, 303
FokI GGATG 2 cut(s) 57, 215
Fsp4HI GCNGC 3 cut(s) 172, 226, 303
FspBI CTAG 1 cut(s) 150
GlaI GCGC 1 cut(s) 224
GluI GCNGC 3 cut(s) 172, 226, 303
HhaI GCGC 1 cut(s) 225
Hin1II CATG 3 cut(s) 99, 436, 493
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HincII GTYRAC 2 cut(s) 255, 390
HindII GTYRAC 2 cut(s) 255, 390
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 2 cut(s) 80, 483
Hpy166II GTNNAC 2 cut(s) 255, 390
Hpy188I TCNGA 3 cut(s) 43, 79, 360
Hpy188III TCNNGA 2 cut(s) 130, 449
Hpy8I GTNNAC 2 cut(s) 255, 390
HpyAV CCTTC 3 cut(s) 31, 48, 136
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4IV ACGT 1 cut(s) 271
HpyCH4V TGCA 4 cut(s) 12, 29, 353, 418
HpyF3I CTNAG 1 cut(s) 450
HpySE526I ACGT 1 cut(s) 271
Hsp92II CATG 3 cut(s) 99, 436, 493
HspAI GCGC 1 cut(s) 223
KspI CCGCGG 1 cut(s) 175
Kzo9I GATC 3 cut(s) 14, 193, 289
LpnPI CCDG 5 cut(s) 22, 91, 115, 319, 462
Lsp1109I GCAGC 2 cut(s) 237, 289
LweI GCATC 1 cut(s) 237
MaeI CTAG 1 cut(s) 150
MaeII ACGT 1 cut(s) 271
MaeIII GTNAC 2 cut(s) 185, 422
MalI GATC 3 cut(s) 16, 195, 291
MboI GATC 3 cut(s) 14, 193, 289
MboII GAAGA 5 cut(s) 63, 221, 387, 390, 419
MflI RGATCY 1 cut(s) 289
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 4 cut(s) 134, 157, 427, 454
MmeI TCCRAC 2 cut(s) 28, 170
MnlI CCTC 3 cut(s) 85, 101, 329
MroXI GAANNNNTTC 2 cut(s) 157, 411
MseI TTAA 3 cut(s) 66, 138, 263
MspA1I CMGCKG 1 cut(s) 174
MvnI CGCG 2 cut(s) 174, 223
NdeII GATC 3 cut(s) 14, 193, 289
NlaIII CATG 3 cut(s) 99, 436, 493
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 422
PdmI GAANNNNTTC 2 cut(s) 157, 411
PfeI GAWTC 2 cut(s) 80, 483
PkrI GCNGC 3 cut(s) 173, 227, 304
PshAI GACNNNNGTC 1 cut(s) 385
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 99, 338
PstI CTGCAG 1 cut(s) 14
PsuI RGATCY 1 cut(s) 289
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
SacII CCGCGG 1 cut(s) 175
SaqAI TTAA 3 cut(s) 66, 138, 263
SatI GCNGC 3 cut(s) 172, 226, 303
Sau3AI GATC 3 cut(s) 14, 193, 289
Sau96I GGNCC 2 cut(s) 99, 338
SduI GDGCHC 1 cut(s) 123
SetI ASST 7 cut(s) 66, 128, 238, 249, 274, 340, 395
SfaNI GCATC 1 cut(s) 237
SfcI CTRYAG 1 cut(s) 10
Sfr303I CCGCGG 1 cut(s) 175
SgrBI CCGCGG 1 cut(s) 175
SinI GGWCC 2 cut(s) 99, 338
Sse9I AATT 4 cut(s) 134, 157, 427, 454
SsiI CCGC 2 cut(s) 172, 174
SspMI CTAG 1 cut(s) 150
StyI CCWWGG 2 cut(s) 232, 247
TaaI ACNGT 1 cut(s) 259
TaiI ACGT 1 cut(s) 274
TaqI TCGA 2 cut(s) 267, 405
TasI AATT 4 cut(s) 134, 157, 427, 454
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 2 cut(s) 80, 483
Tru1I TTAA 3 cut(s) 66, 138, 263
Tru9I TTAA 3 cut(s) 66, 138, 263
TscAI CASTG 2 cut(s) 196, 313
TseFI GTSAC 1 cut(s) 422
TseI GCWGC 2 cut(s) 225, 302
Tsp45I GTSAC 1 cut(s) 422
TspDTI ATGAA 3 cut(s) 222, 421, 474
TspGWI ACGGA 2 cut(s) 216, 330
TspRI CASTG 2 cut(s) 196, 313
VpaK11BI GGWCC 2 cut(s) 99, 338
XapI RAATTY 1 cut(s) 134
XmnI GAANNNNTTC 2 cut(s) 157, 411
XspI CTAG 1 cut(s) 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.