Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0022973

Physical Location & Seq

Genomic Coordinates Forward (+)

58060784 .. 58061899

Gene Structure 1116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030228

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGATCTGGGCACCAAACTGGAGGAAACCCATAGAAATCAAGCCAGATTCCGGCCACCAGAAATCAGGTCGGATCTTGGGTGCAGGCATACAGCTGAGGGATCCCTGTCGTCATCATTATCGGAGAGACCGGTTCCCGTCGAAACAAGGCCGTGTGGTAGGCCAGGTTTGCGTCAGCGCTGTCTCCGACTACGAAAATCCGGATCTGTCACGCCACACCACTGTCTACGTTGGGTGCTCCATTTACGGTTTAAACGACAAGGTCTCGTTCTCGGGATCCGACCAGACGAACCAGCCGGCGAGCCTCTACGCAGCGACAAAGAAAGCCGGCGAGGCCTACACAATCGATGGAGGAGGATTGGCCGATTTACATGCCTCGAGAAGAGTAACGAGGTTCAAGTTGAGTAAATTAGTAAAAGGCATCAAGGCCCAAGACAATAGTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005996 GO:0006063 GO:0006082 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0012505 GO:0016051 GO:0016053 GO:0016853 GO:0016854 GO:0016857 GO:0019586 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032787 GO:0033481 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046364 GO:0046394 GO:0050378 GO:0050829 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0072330 GO:0097708 GO:0098542 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Epimerase GDP_Man_Dehyd

Protein Analysis

149

Amino Acids

16.34

Weight (kDa)

9.78

Isoelectric Point (pI)

25.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022973)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000030228
rosa_multiflora	Rmu_sc0003725.1_g000013
rosa_samantha	Rh1AG352000 Rh4CG044100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	10
AccI	GTMKAC	1 cut(s)	225
AccIII	TCCGGA	1 cut(s)	199
AclWI	GGATC	6 cut(s)	80, 95, 108, 210, 270, 283
AcoI	YGGCCR	2 cut(s)	52, 360
AfeI	AGCGCT	1 cut(s)	178
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgeI	ACCGGT	1 cut(s)	129
AgsI	TTSAA	1 cut(s)	397
AjnI	CCWGG	1 cut(s)	162
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
Alw21I	GWGCWC	1 cut(s)	239
Alw26I	GTCTC	3 cut(s)	120, 187, 268
AlwI	GGATC	6 cut(s)	80, 95, 108, 210, 270, 283
Ama87I	CYCGRG	2 cut(s)	271, 376
Aor13HI	TCCGGA	1 cut(s)	199
Aor51HI	AGCGCT	1 cut(s)	178
AoxI	GGCC	6 cut(s)	52, 148, 160, 333, 360, 426
ApeKI	GCWGC	1 cut(s)	311
AsiGI	ACCGGT	1 cut(s)	129
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	427
AvaI	CYCGRG	2 cut(s)	271, 376
BaeGI	GKGCMC	1 cut(s)	13
BamHI	GGATCC	2 cut(s)	100, 275
BanI	GGYRCC	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	239
BbvCI	CCTCAGC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	323
BccI	CCATC	1 cut(s)	341
BceAI	ACGGC	1 cut(s)	135
BcgI	CGANNNNNNTGC	2 cut(s)	353, 387
BciT130I	CCWGG	1 cut(s)	164
BcoDI	GTCTC	3 cut(s)	120, 187, 268
BfoI	RGCGCY	1 cut(s)	180
BglI	GCCNNNNNGGC	1 cut(s)	332
BisI	GCNGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	313
Bme1390I	CCNGG	1 cut(s)	164
BmeT110I	CYCGRG	2 cut(s)	271, 376
BmgT120I	GGNCC	1 cut(s)	427
BmiI	GGNNCC	4 cut(s)	12, 102, 134, 277
BmrFI	CCNGG	1 cut(s)	164
BmsI	GCATC	1 cut(s)	429
BoxI	GACNNNNGTC	1 cut(s)	438
BpmI	CTGGAG	1 cut(s)	40
Bpu10I	CCTNAGC	1 cut(s)	95
Bsa29I	ATCGAT	1 cut(s)	345
BsaI	GGTCTC	2 cut(s)	120, 268
BsaWI	WCCGGW	2 cut(s)	129, 199
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse118I	RCCGGY	3 cut(s)	129, 295, 326
Bse1I	ACTGG	1 cut(s)	23
BseAI	TCCGGA	1 cut(s)	199
BseBI	CCWGG	1 cut(s)	164
BseCI	ATCGAT	1 cut(s)	345
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMII	CTCAG	1 cut(s)	86
BseNI	ACTGG	1 cut(s)	23
BseRI	GAGGAG	1 cut(s)	366
BseSI	GKGCMC	1 cut(s)	13
BseXI	GCAGC	1 cut(s)	323
BsgI	GTGCAG	1 cut(s)	102
BshFI	GGCC	6 cut(s)	54, 150, 162, 335, 362, 428
BshNI	GGYRCC	1 cut(s)	10
BshTI	ACCGGT	1 cut(s)	129
BshVI	ATCGAT	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	239
BsiHKCI	CYCGRG	2 cut(s)	271, 376
BsiSI	CCGG	5 cut(s)	51, 130, 200, 296, 327
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmAI	GTCTC	3 cut(s)	120, 187, 268
BsnI	GGCC	6 cut(s)	54, 150, 162, 335, 362, 428
Bso31I	GGTCTC	2 cut(s)	120, 268
BsoBI	CYCGRG	2 cut(s)	271, 376
Bsp1286I	GDGCHC	2 cut(s)	13, 239
Bsp13I	TCCGGA	1 cut(s)	199
Bsp143I	GATC	5 cut(s)	3, 72, 100, 202, 275
BspANI	GGCC	6 cut(s)	54, 150, 162, 335, 362, 428
BspCNI	CTCAG	1 cut(s)	87
BspDI	ATCGAT	1 cut(s)	345
BspEI	TCCGGA	1 cut(s)	199
BspLI	GGNNCC	4 cut(s)	12, 102, 134, 277
BspPI	GGATC	6 cut(s)	80, 95, 108, 210, 270, 283
BspT107I	GGYRCC	1 cut(s)	10
BspTNI	GGTCTC	2 cut(s)	120, 268
BsrFI	RCCGGY	3 cut(s)	129, 295, 326
BsrI	ACTGG	1 cut(s)	23
BssAI	RCCGGY	3 cut(s)	129, 295, 326
BssMI	GATC	5 cut(s)	3, 72, 100, 202, 275
Bst2UI	CCWGG	1 cut(s)	164
Bst4CI	ACNGT	2 cut(s)	223, 248
Bst6I	CTCTTC	1 cut(s)	376
BstC8I	GCNNGC	4 cut(s)	85, 297, 301, 328
BstDEI	CTNAG	1 cut(s)	95
BstH2I	RGCGCY	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	5 cut(s)	6, 75, 103, 205, 278
BstMAI	GTCTC	3 cut(s)	120, 187, 268
BstMBI	GATC	5 cut(s)	3, 72, 100, 202, 275
BstMWI	GCNNNNNNNGC	2 cut(s)	168, 332
BstNI	CCWGG	1 cut(s)	164
BstNSI	RCATGY	1 cut(s)	374
BstPAI	GACNNNNGTC	1 cut(s)	438
BstSCI	CCNGG	1 cut(s)	162
BstSLI	GKGCMC	1 cut(s)	13
BstV1I	GCAGC	1 cut(s)	323
BstX2I	RGATCY	4 cut(s)	72, 100, 202, 275
BstYI	RGATCY	4 cut(s)	72, 100, 202, 275
Bsu15I	ATCGAT	1 cut(s)	345
BsuRI	GGCC	6 cut(s)	54, 150, 162, 335, 362, 428
BsuTUI	ATCGAT	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	4 cut(s)	85, 297, 301, 328
CfoI	GCGC	1 cut(s)	179
Cfr10I	RCCGGY	3 cut(s)	129, 295, 326
Cfr13I	GGNCC	1 cut(s)	427
ClaI	ATCGAT	1 cut(s)	345
CseI	GACGC	1 cut(s)	160
CspAI	ACCGGT	1 cut(s)	129
CviAII	CATG	1 cut(s)	371
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	5 cut(s)	5, 74, 102, 204, 277
DpnII	GATC	5 cut(s)	3, 72, 100, 202, 275
DraI	TTTAAA	1 cut(s)	252
EaeI	YGGCCR	2 cut(s)	52, 360
Eam1104I	CTCTTC	1 cut(s)	376
EarI	CTCTTC	1 cut(s)	376
Eco147I	AGGCCT	1 cut(s)	335
Eco31I	GGTCTC	2 cut(s)	120, 268
Eco47III	AGCGCT	1 cut(s)	178
Eco88I	CYCGRG	2 cut(s)	271, 376
EcoRII	CCWGG	1 cut(s)	162
FaeI	CATG	1 cut(s)	374
FaiI	YATR	3 cut(s)	32, 89, 372
FatI	CATG	1 cut(s)	370
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	1 cut(s)	312
Fsp4HI	GCNGC	1 cut(s)	312
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	1 cut(s)	312
GsuI	CTGGAG	1 cut(s)	40
HaeII	RGCGCY	1 cut(s)	180
HaeIII	GGCC	6 cut(s)	54, 150, 162, 335, 362, 428
HapII	CCGG	5 cut(s)	51, 130, 200, 296, 327
HgaI	GACGC	1 cut(s)	160
HhaI	GCGC	1 cut(s)	179
Hin1II	CATG	1 cut(s)	374
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HinfI	GANTC	1 cut(s)	47
HpaII	CCGG	5 cut(s)	51, 130, 200, 296, 327
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	4 cut(s)	72, 123, 187, 280
Hpy188III	TCNNGA	3 cut(s)	200, 273, 378
Hpy8I	GTNNAC	1 cut(s)	226
Hpy99I	CGWCG	1 cut(s)	142
HpyCH4III	ACNGT	2 cut(s)	223, 248
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	2 cut(s)	168, 332
HpyF3I	CTNAG	1 cut(s)	95
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	1 cut(s)	374
HspAI	GCGC	1 cut(s)	177
Kpn2I	TCCGGA	1 cut(s)	199
KroI	GCCGGC	2 cut(s)	295, 326
KroNI	GCCGGC	2 cut(s)	297, 328
Kzo9I	GATC	5 cut(s)	3, 72, 100, 202, 275
LmnI	GCTCC	1 cut(s)	242
Lsp1109I	GCAGC	1 cut(s)	323
LweI	GCATC	1 cut(s)	429
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	2 cut(s)	207, 385
MalI	GATC	5 cut(s)	5, 74, 102, 204, 277
MboI	GATC	5 cut(s)	3, 72, 100, 202, 275
MboII	GAAGA	1 cut(s)	393
MflI	RGATCY	4 cut(s)	72, 100, 202, 275
MhlI	GDGCHC	2 cut(s)	13, 239
MluCI	AATT	1 cut(s)	407
MmeI	TCCRAC	3 cut(s)	50, 210, 303
MnlI	CCTC	8 cut(s)	15, 90, 314, 325, 344, 347, 384, 385
MroI	TCCGGA	1 cut(s)	199
MroNI	GCCGGC	2 cut(s)	295, 326
MseI	TTAA	1 cut(s)	251
MspA1I	CMGCKG	1 cut(s)	94
MspI	CCGG	5 cut(s)	51, 130, 200, 296, 327
MspR9I	CCNGG	1 cut(s)	164
MssI	GTTTAAAC	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	164
MwoI	GCNNNNNNNGC	2 cut(s)	168, 332
NaeI	GCCGGC	2 cut(s)	297, 328
NdeII	GATC	5 cut(s)	3, 72, 100, 202, 275
NgoMIV	GCCGGC	2 cut(s)	295, 326
NlaIII	CATG	1 cut(s)	374
NlaIV	GGNNCC	4 cut(s)	12, 102, 134, 277
NmuCI	GTSAC	1 cut(s)	207
NspI	RCATGY	1 cut(s)	374
PaeR7I	CTCGAG	1 cut(s)	376
PceI	AGGCCT	1 cut(s)	335
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PdiI	GCCGGC	2 cut(s)	297, 328
PfeI	GAWTC	1 cut(s)	47
PflFI	GACNNNGTC	1 cut(s)	260
PinAI	ACCGGT	1 cut(s)	129
PkrI	GCNGC	1 cut(s)	313
PmeI	GTTTAAAC	1 cut(s)	252
PshAI	GACNNNNGTC	1 cut(s)	438
Psp6I	CCWGG	1 cut(s)	162
PspGI	CCWGG	1 cut(s)	162
PspN4I	GGNNCC	4 cut(s)	12, 102, 134, 277
PspPI	GGNCC	1 cut(s)	427
PsuI	RGATCY	4 cut(s)	72, 100, 202, 275
PsyI	GACNNNGTC	1 cut(s)	260
PvuII	CAGCTG	1 cut(s)	94
SaqAI	TTAA	1 cut(s)	251
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	5 cut(s)	3, 72, 100, 202, 275
Sau96I	GGNCC	1 cut(s)	427
ScrFI	CCNGG	1 cut(s)	164
SduI	GDGCHC	2 cut(s)	13, 239
SetI	ASST	6 cut(s)	70, 96, 168, 231, 264, 395
SfaNI	GCATC	1 cut(s)	429
Sfr274I	CTCGAG	1 cut(s)	376
SlaI	CTCGAG	1 cut(s)	376
SmlI	CTYRAG	1 cut(s)	376
SmoI	CTYRAG	1 cut(s)	376
Sse9I	AATT	1 cut(s)	407
SseBI	AGGCCT	1 cut(s)	335
StuI	AGGCCT	1 cut(s)	335
StyD4I	CCNGG	1 cut(s)	162
TaaI	ACNGT	2 cut(s)	223, 248
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	3 cut(s)	140, 345, 377
TasI	AATT	1 cut(s)	407
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	1 cut(s)	207
TseI	GCWGC	1 cut(s)	311
Tsp45I	GTSAC	1 cut(s)	207
TspRI	CASTG	1 cut(s)	226
Tth111I	GACNNNGTC	1 cut(s)	260
XceI	RCATGY	1 cut(s)	374
XhoI	CTCGAG	1 cut(s)	376
XmiI	GTMKAC	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.