Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0022973

Physical Location & Seq

Genomic Coordinates Forward (+)

58815742 .. 58816125

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG352000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGTCAGATCTTGGGTGCAGGAAGACAGGAATGCAGCTGAGGGATCCCTGTCGTCATCATTGTCGGAGAGACCGGTTCCCGTTGAAACAAGGTTGCGTGGTAGGCCAGGTTCGAATCGGCGCTGTCTCCGGCTACGGAGATCTGGATCTGTCACGCCACGCCACTGTCTGCGCTGGGTGCTCCGTTTACGGCTTAAACGACAAGGTCTCGTTCTCGGGATCTGACAAGACGGACCAGCCGGCGAGCCTCTACTCAGCCACGAAGAAAGCCAGCGAGGCCCACACAATTGATGGCGGAGAATTGGCCTATTTACATGCCTCGAGAAGAGTAACGAGGTTGGCGATGTTGCTGCGGTTCTCCATGACGAATCAGATTCCGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005996 GO:0006063 GO:0006082 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0012505 GO:0016051 GO:0016053 GO:0016853 GO:0016854 GO:0016857 GO:0019586 GO:0019752 GO:0031410 GO:0031982 GO:0031984 GO:0032787 GO:0033481 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046364 GO:0046394 GO:0050378 GO:0050829 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0072330 GO:0097708 GO:0098542 GO:0098791 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Epimerase GDP_Man_Dehyd

Protein Analysis

127

Amino Acids

13.85

Weight (kDa)

9.35

Isoelectric Point (pI)

26.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022973)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000030228
rosa_multiflora	Rmu_sc0003725.1_g000013
rosa_samantha	Rh1AG352000 Rh4CG044100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	294, 352
AclWI	GGATC	4 cut(s)	38, 51, 153, 226
AgeI	ACCGGT	1 cut(s)	72
AgsI	TTSAA	1 cut(s)	85
AjnI	CCWGG	1 cut(s)	105
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
Alw21I	GWGCWC	1 cut(s)	182
Alw26I	GTCTC	3 cut(s)	63, 130, 211
AlwI	GGATC	4 cut(s)	38, 51, 153, 226
Ama87I	CYCGRG	2 cut(s)	214, 319
AoxI	GGCC	4 cut(s)	103, 276, 303, 378
ApeKI	GCWGC	2 cut(s)	34, 349
AsiGI	ACCGGT	1 cut(s)	72
AspLEI	GCGC	2 cut(s)	122, 173
AspS9I	GGNCC	2 cut(s)	232, 277
AsuII	TTCGAA	1 cut(s)	112
AvaI	CYCGRG	2 cut(s)	214, 319
AvaII	GGWCC	1 cut(s)	232
BamHI	GGATCC	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	182
BbvCI	CCTCAGC	1 cut(s)	38
BbvI	GCAGC	2 cut(s)	46, 336
BccI	CCATC	1 cut(s)	284
BceAI	ACGGC	1 cut(s)	205
BcgI	CGANNNNNNTGC	2 cut(s)	331, 365
BciT130I	CCWGG	1 cut(s)	107
BcoDI	GTCTC	3 cut(s)	63, 130, 211
BfoI	RGCGCY	1 cut(s)	123
BglI	GCCNNNNNGGC	1 cut(s)	275
BglII	AGATCT	2 cut(s)	7, 139
BisI	GCNGC	2 cut(s)	35, 350
BlsI	GCNGC	2 cut(s)	36, 351
Bme1390I	CCNGG	1 cut(s)	107
Bme18I	GGWCC	1 cut(s)	232
BmeT110I	CYCGRG	2 cut(s)	214, 319
BmgT120I	GGNCC	2 cut(s)	232, 277
BmiI	GGNNCC	2 cut(s)	45, 77
BmrFI	CCNGG	1 cut(s)	107
BpiI	GAAGAC	1 cut(s)	29
Bpu10I	CCTNAGC	1 cut(s)	38
Bpu14I	TTCGAA	1 cut(s)	112
BsaBI	GATNNNNATC	1 cut(s)	144
BsaI	GGTCTC	2 cut(s)	63, 211
BsaWI	WCCGGW	1 cut(s)	72
Bse118I	RCCGGY	2 cut(s)	72, 238
Bse8I	GATNNNNATC	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	107
BseJI	GATNNNNATC	1 cut(s)	144
BseMII	CTCAG	2 cut(s)	29, 267
BseXI	GCAGC	2 cut(s)	46, 336
BseYI	CCCAGC	1 cut(s)	173
BsgI	GTGCAG	1 cut(s)	37
BshFI	GGCC	4 cut(s)	105, 278, 305, 380
BshTI	ACCGGT	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	182
BsiHKCI	CYCGRG	2 cut(s)	214, 319
BsiSI	CCGG	4 cut(s)	73, 129, 239, 377
BsmAI	GTCTC	3 cut(s)	63, 130, 211
BsmI	GAATGC	1 cut(s)	36
BsnI	GGCC	4 cut(s)	105, 278, 305, 380
Bso31I	GGTCTC	2 cut(s)	63, 211
BsoBI	CYCGRG	2 cut(s)	214, 319
Bsp119I	TTCGAA	1 cut(s)	112
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp143I	GATC	5 cut(s)	7, 43, 139, 145, 218
BspACI	CCGC	2 cut(s)	294, 352
BspANI	GGCC	4 cut(s)	105, 278, 305, 380
BspCNI	CTCAG	2 cut(s)	30, 266
BspLI	GGNNCC	2 cut(s)	45, 77
BspPI	GGATC	4 cut(s)	38, 51, 153, 226
BspT104I	TTCGAA	1 cut(s)	112
BspTNI	GGTCTC	2 cut(s)	63, 211
BsrFI	RCCGGY	2 cut(s)	72, 238
BssAI	RCCGGY	2 cut(s)	72, 238
BssMI	GATC	5 cut(s)	7, 43, 139, 145, 218
Bst2UI	CCWGG	1 cut(s)	107
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	1 cut(s)	319
BstBI	TTCGAA	1 cut(s)	112
BstC8I	GCNNGC	3 cut(s)	240, 244, 271
BstDEI	CTNAG	2 cut(s)	38, 253
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	2 cut(s)	122, 173
BstKTI	GATC	5 cut(s)	10, 46, 142, 148, 221
BstMAI	GTCTC	3 cut(s)	63, 130, 211
BstMBI	GATC	5 cut(s)	7, 43, 139, 145, 218
BstMWI	GCNNNNNNNGC	3 cut(s)	102, 177, 275
BstNI	CCWGG	1 cut(s)	107
BstNSI	RCATGY	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	105
BstV1I	GCAGC	2 cut(s)	46, 336
BstV2I	GAAGAC	1 cut(s)	29
BstX2I	RGATCY	5 cut(s)	7, 43, 139, 145, 218
BstYI	RGATCY	5 cut(s)	7, 43, 139, 145, 218
BsuRI	GGCC	4 cut(s)	105, 278, 305, 380
BtgZI	GCGATG	1 cut(s)	356
BtsIMutI	CAGTG	1 cut(s)	162
Cac8I	GCNNGC	3 cut(s)	240, 244, 271
CfoI	GCGC	2 cut(s)	122, 173
Cfr10I	RCCGGY	2 cut(s)	72, 238
Cfr13I	GGNCC	2 cut(s)	232, 277
CspAI	ACCGGT	1 cut(s)	72
CviAII	CATG	2 cut(s)	314, 361
DdeI	CTNAG	2 cut(s)	38, 253
DpnI	GATC	5 cut(s)	9, 45, 141, 147, 220
DpnII	GATC	5 cut(s)	7, 43, 139, 145, 218
Eam1104I	CTCTTC	1 cut(s)	319
EarI	CTCTTC	1 cut(s)	319
EciI	GGCGGA	1 cut(s)	309
Eco31I	GGTCTC	2 cut(s)	63, 211
Eco47I	GGWCC	1 cut(s)	232
Eco88I	CYCGRG	2 cut(s)	214, 319
EcoRII	CCWGG	1 cut(s)	105
FaeI	CATG	2 cut(s)	317, 364
FaiI	YATR	2 cut(s)	315, 362
FatI	CATG	2 cut(s)	313, 360
Fnu4HI	GCNGC	2 cut(s)	35, 350
Fsp4HI	GCNGC	2 cut(s)	35, 350
GlaI	GCGC	2 cut(s)	121, 172
GluI	GCNGC	2 cut(s)	35, 350
GsaI	CCCAGC	1 cut(s)	177
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	4 cut(s)	105, 278, 305, 380
HapII	CCGG	4 cut(s)	73, 129, 239, 377
HhaI	GCGC	2 cut(s)	122, 173
Hin1II	CATG	2 cut(s)	317, 364
Hin6I	GCGC	2 cut(s)	120, 171
HinP1I	GCGC	2 cut(s)	120, 171
HinfI	GANTC	3 cut(s)	114, 367, 373
HpaII	CCGG	4 cut(s)	73, 129, 239, 377
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	4 cut(s)	7, 66, 223, 372
Hpy188III	TCNNGA	3 cut(s)	143, 216, 321
Hpy8I	GTNNAC	1 cut(s)	187
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	2 cut(s)	18, 34
HpyF10VI	GCNNNNNNNGC	3 cut(s)	102, 177, 275
HpyF3I	CTNAG	2 cut(s)	38, 253
Hsp92II	CATG	2 cut(s)	317, 364
HspAI	GCGC	2 cut(s)	120, 171
KroI	GCCGGC	1 cut(s)	238
KroNI	GCCGGC	1 cut(s)	240
Kzo9I	GATC	5 cut(s)	7, 43, 139, 145, 218
LmnI	GCTCC	1 cut(s)	185
Lsp1109I	GCAGC	2 cut(s)	46, 336
MaeIII	GTNAC	2 cut(s)	150, 328
MalI	GATC	5 cut(s)	9, 45, 141, 147, 220
MboI	GATC	5 cut(s)	7, 43, 139, 145, 218
MboII	GAAGA	3 cut(s)	34, 274, 336
MfeI	CAATTG	1 cut(s)	285
MflI	RGATCY	5 cut(s)	7, 43, 139, 145, 218
MhlI	GDGCHC	1 cut(s)	182
MluCI	AATT	2 cut(s)	285, 299
MmeI	TCCRAC	1 cut(s)	44
MnlI	CCTC	5 cut(s)	33, 257, 268, 327, 328
MroNI	GCCGGC	1 cut(s)	238
MseI	TTAA	1 cut(s)	194
MspA1I	CMGCKG	1 cut(s)	37
MspI	CCGG	4 cut(s)	73, 129, 239, 377
MspR9I	CCNGG	1 cut(s)	107
MunI	CAATTG	1 cut(s)	285
Mva1269I	GAATGC	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	3 cut(s)	102, 177, 275
NaeI	GCCGGC	1 cut(s)	240
NdeII	GATC	5 cut(s)	7, 43, 139, 145, 218
NgoMIV	GCCGGC	1 cut(s)	238
NlaIII	CATG	2 cut(s)	317, 364
NlaIV	GGNNCC	2 cut(s)	45, 77
NmuCI	GTSAC	1 cut(s)	150
NspI	RCATGY	1 cut(s)	317
NspV	TTCGAA	1 cut(s)	112
PaeR7I	CTCGAG	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	2 cut(s)	195, 338
PctI	GAATGC	1 cut(s)	36
PdiI	GCCGGC	1 cut(s)	240
PfeI	GAWTC	3 cut(s)	114, 367, 373
PflFI	GACNNNGTC	1 cut(s)	203
PinAI	ACCGGT	1 cut(s)	72
PkrI	GCNGC	2 cut(s)	36, 351
Psp6I	CCWGG	1 cut(s)	105
PspFI	CCCAGC	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	2 cut(s)	45, 77
PspPI	GGNCC	2 cut(s)	232, 277
PsrI	GAACNNNNNNTAC	2 cut(s)	93, 125
PsuI	RGATCY	5 cut(s)	7, 43, 139, 145, 218
PsyI	GACNNNGTC	1 cut(s)	203
PvuII	CAGCTG	1 cut(s)	37
SaqAI	TTAA	1 cut(s)	194
SatI	GCNGC	2 cut(s)	35, 350
Sau3AI	GATC	5 cut(s)	7, 43, 139, 145, 218
Sau96I	GGNCC	2 cut(s)	232, 277
ScrFI	CCNGG	1 cut(s)	107
SduI	GDGCHC	1 cut(s)	182
SetI	ASST	5 cut(s)	39, 94, 111, 207, 338
Sfr274I	CTCGAG	1 cut(s)	319
SfuI	TTCGAA	1 cut(s)	112
SinI	GGWCC	1 cut(s)	232
SlaI	CTCGAG	1 cut(s)	319
SmlI	CTYRAG	1 cut(s)	319
SmoI	CTYRAG	1 cut(s)	319
Sse9I	AATT	2 cut(s)	285, 299
SsiI	CCGC	2 cut(s)	294, 352
StyD4I	CCNGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	166
TaqI	TCGA	2 cut(s)	112, 320
TasI	AATT	2 cut(s)	285, 299
TfiI	GAWTC	3 cut(s)	114, 367, 373
Tru1I	TTAA	1 cut(s)	194
Tru9I	TTAA	1 cut(s)	194
TscAI	CASTG	1 cut(s)	169
TseFI	GTSAC	1 cut(s)	150
TseI	GCWGC	2 cut(s)	34, 349
Tsp45I	GTSAC	1 cut(s)	150
TspGWI	ACGGA	3 cut(s)	150, 172, 245
TspRI	CASTG	1 cut(s)	169
Tth111I	GACNNNGTC	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	232
XceI	RCATGY	1 cut(s)	317
XcmI	CCANNNNNNNNNTGG	1 cut(s)	287
XhoI	CTCGAG	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.