Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003725.1

Orthogroup ID

OG0022973

Physical Location & Seq

Genomic Coordinates Forward (+)

59506 .. 59859

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003725.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atgcaactgagggatccccgtcgtcatcattatcggagagaccggttcccatcgaaacaaggccgagtggtaggccaagtttgcgtcggcgctgtctccagccacgaagatccggatctgccacgccacgccactgtctgcgctaggtgctccgtttacggcttaaacgacaaggtctcgttctcgggatccgaccggacggaccagccggcaagcctctacgcagcgacaaacaaagccggcgaggcccacacaatcgacgacagaggattggccgatttacatgcctcgagaagagtaatgaggttggcgatgttgctgtggttctccatgatgtatcggactccggcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

Epimerase GDP_Man_Dehyd

Protein Analysis

117

Amino Acids

13.2

Weight (kDa)

9.72

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022973)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000030228
rosa_multiflora	Rmu_sc0003725.1_g000013
rosa_samantha	Rh1AG352000 Rh4CG044100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	112
AclWI	GGATC	6 cut(s)	8, 21, 104, 123, 183, 196
AcoI	YGGCCR	1 cut(s)	273
AgeI	ACCGGT	1 cut(s)	42
Alw21I	GWGCWC	1 cut(s)	152
Alw26I	GTCTC	3 cut(s)	33, 100, 181
AlwI	GGATC	6 cut(s)	8, 21, 104, 123, 183, 196
Ama87I	CYCGRG	2 cut(s)	184, 289
Aor13HI	TCCGGA	1 cut(s)	112
AoxI	GGCC	5 cut(s)	61, 73, 246, 273, 348
ApeKI	GCWGC	1 cut(s)	224
AsiGI	ACCGGT	1 cut(s)	42
AspLEI	GCGC	2 cut(s)	92, 143
AspS9I	GGNCC	2 cut(s)	202, 247
AvaI	CYCGRG	2 cut(s)	184, 289
AvaII	GGWCC	1 cut(s)	202
BamHI	GGATCC	2 cut(s)	13, 188
Bbv12I	GWGCWC	1 cut(s)	152
BbvI	GCAGC	1 cut(s)	236
BccI	CCATC	1 cut(s)	58
BceAI	ACGGC	1 cut(s)	175
BcgI	CGANNNNNNTGC	2 cut(s)	266, 300
BcoDI	GTCTC	3 cut(s)	33, 100, 181
BfaI	CTAG	1 cut(s)	144
BfoI	RGCGCY	1 cut(s)	93
BglI	GCCNNNNNGGC	1 cut(s)	245
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
Bme18I	GGWCC	1 cut(s)	202
BmeT110I	CYCGRG	2 cut(s)	184, 289
BmgT120I	GGNCC	2 cut(s)	202, 247
BmiI	GGNNCC	3 cut(s)	15, 47, 190
BpmI	CTGGAG	1 cut(s)	82
BsaBI	GATNNNNATC	1 cut(s)	114
BsaI	GGTCTC	2 cut(s)	33, 181
BsaWI	WCCGGW	3 cut(s)	42, 112, 195
Bse118I	RCCGGY	3 cut(s)	42, 208, 239
Bse8I	GATNNNNATC	1 cut(s)	114
BseAI	TCCGGA	1 cut(s)	112
BseJI	GATNNNNATC	1 cut(s)	114
BseXI	GCAGC	1 cut(s)	236
Bsh1285I	CGRYCG	1 cut(s)	196
BshFI	GGCC	5 cut(s)	63, 75, 248, 275, 350
BshTI	ACCGGT	1 cut(s)	42
BsiEI	CGRYCG	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	152
BsiHKCI	CYCGRG	2 cut(s)	184, 289
BsiSI	CCGG	6 cut(s)	43, 113, 196, 209, 240, 347
BsmAI	GTCTC	3 cut(s)	33, 100, 181
BsnI	GGCC	5 cut(s)	63, 75, 248, 275, 350
Bso31I	GGTCTC	2 cut(s)	33, 181
BsoBI	CYCGRG	2 cut(s)	184, 289
Bsp1286I	GDGCHC	1 cut(s)	152
Bsp13I	TCCGGA	1 cut(s)	112
Bsp143I	GATC	4 cut(s)	13, 109, 115, 188
BspANI	GGCC	5 cut(s)	63, 75, 248, 275, 350
BspEI	TCCGGA	1 cut(s)	112
BspLI	GGNNCC	3 cut(s)	15, 47, 190
BspPI	GGATC	6 cut(s)	8, 21, 104, 123, 183, 196
BspTNI	GGTCTC	2 cut(s)	33, 181
BsrFI	RCCGGY	3 cut(s)	42, 208, 239
BssAI	RCCGGY	3 cut(s)	42, 208, 239
BssMI	GATC	4 cut(s)	13, 109, 115, 188
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	289
BstC8I	GCNNGC	3 cut(s)	210, 214, 241
BstDEI	CTNAG	1 cut(s)	8
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	2 cut(s)	92, 143
BstKTI	GATC	4 cut(s)	16, 112, 118, 191
BstMAI	GTCTC	3 cut(s)	33, 100, 181
BstMBI	GATC	4 cut(s)	13, 109, 115, 188
BstMCI	CGRYCG	1 cut(s)	196
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 147, 245
BstNSI	RCATGY	1 cut(s)	287
BstV1I	GCAGC	1 cut(s)	236
BstX2I	RGATCY	4 cut(s)	13, 109, 115, 188
BstYI	RGATCY	4 cut(s)	13, 109, 115, 188
BsuRI	GGCC	5 cut(s)	63, 75, 248, 275, 350
BtgZI	GCGATG	1 cut(s)	326
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	3 cut(s)	210, 214, 241
CfoI	GCGC	2 cut(s)	92, 143
Cfr10I	RCCGGY	3 cut(s)	42, 208, 239
Cfr13I	GGNCC	2 cut(s)	202, 247
CseI	GACGC	1 cut(s)	73
CspAI	ACCGGT	1 cut(s)	42
CviAII	CATG	2 cut(s)	284, 331
DdeI	CTNAG	1 cut(s)	8
DpnI	GATC	4 cut(s)	15, 111, 117, 190
DpnII	GATC	4 cut(s)	13, 109, 115, 188
EaeI	YGGCCR	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	289
EarI	CTCTTC	1 cut(s)	289
Eco31I	GGTCTC	2 cut(s)	33, 181
Eco47I	GGWCC	1 cut(s)	202
Eco88I	CYCGRG	2 cut(s)	184, 289
FaeI	CATG	2 cut(s)	287, 334
FaiI	YATR	2 cut(s)	285, 332
FatI	CATG	2 cut(s)	283, 330
Fnu4HI	GCNGC	1 cut(s)	225
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	1 cut(s)	144
GlaI	GCGC	2 cut(s)	91, 142
GluI	GCNGC	1 cut(s)	225
GsuI	CTGGAG	1 cut(s)	82
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	5 cut(s)	63, 75, 248, 275, 350
HapII	CCGG	6 cut(s)	43, 113, 196, 209, 240, 347
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	2 cut(s)	92, 143
Hin1II	CATG	2 cut(s)	287, 334
Hin6I	GCGC	2 cut(s)	90, 141
HinP1I	GCGC	2 cut(s)	90, 141
HinfI	GANTC	1 cut(s)	343
HpaII	CCGG	6 cut(s)	43, 113, 196, 209, 240, 347
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	3 cut(s)	36, 193, 342
Hpy188III	TCNNGA	3 cut(s)	113, 186, 291
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	3 cut(s)	24, 89, 263
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 147, 245
HpyF3I	CTNAG	1 cut(s)	8
Hsp92II	CATG	2 cut(s)	287, 334
HspAI	GCGC	2 cut(s)	90, 141
Kpn2I	TCCGGA	1 cut(s)	112
KroI	GCCGGC	2 cut(s)	208, 239
KroNI	GCCGGC	2 cut(s)	210, 241
Kzo9I	GATC	4 cut(s)	13, 109, 115, 188
LmnI	GCTCC	1 cut(s)	155
LpnPI	CCDG	7 cut(s)	56, 112, 126, 209, 218, 222, 253
Lsp1109I	GCAGC	1 cut(s)	236
MaeI	CTAG	1 cut(s)	144
MalI	GATC	4 cut(s)	15, 111, 117, 190
MboI	GATC	4 cut(s)	13, 109, 115, 188
MboII	GAAGA	2 cut(s)	119, 306
MflI	RGATCY	4 cut(s)	13, 109, 115, 188
MhlI	GDGCHC	1 cut(s)	152
MlyI	GAGTC	1 cut(s)	337
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	6 cut(s)	3, 227, 238, 260, 297, 298
MroI	TCCGGA	1 cut(s)	112
MroNI	GCCGGC	2 cut(s)	208, 239
MseI	TTAA	1 cut(s)	164
MspI	CCGG	6 cut(s)	43, 113, 196, 209, 240, 347
MwoI	GCNNNNNNNGC	3 cut(s)	81, 147, 245
NaeI	GCCGGC	2 cut(s)	210, 241
NdeII	GATC	4 cut(s)	13, 109, 115, 188
NgoMIV	GCCGGC	2 cut(s)	208, 239
NlaIII	CATG	2 cut(s)	287, 334
NlaIV	GGNNCC	3 cut(s)	15, 47, 190
NmeAIII	GCCGAG	1 cut(s)	89
NspI	RCATGY	1 cut(s)	287
PaeR7I	CTCGAG	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PdiI	GCCGGC	2 cut(s)	210, 241
PflFI	GACNNNGTC	1 cut(s)	173
PinAI	ACCGGT	1 cut(s)	42
PkrI	GCNGC	1 cut(s)	226
PleI	GAGTC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	337
PspN4I	GGNNCC	3 cut(s)	15, 47, 190
PspPI	GGNCC	2 cut(s)	202, 247
PsuI	RGATCY	4 cut(s)	13, 109, 115, 188
PsyI	GACNNNGTC	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	4 cut(s)	13, 109, 115, 188
Sau96I	GGNCC	2 cut(s)	202, 247
SchI	GAGTC	1 cut(s)	337
SduI	GDGCHC	1 cut(s)	152
SetI	ASST	3 cut(s)	149, 177, 308
Sfr274I	CTCGAG	1 cut(s)	289
SinI	GGWCC	1 cut(s)	202
SlaI	CTCGAG	1 cut(s)	289
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
SspMI	CTAG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	136
TaqI	TCGA	3 cut(s)	53, 258, 290
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	1 cut(s)	224
TspGWI	ACGGA	2 cut(s)	142, 215
TspRI	CASTG	1 cut(s)	139
Tth111I	GACNNNGTC	1 cut(s)	173
VpaK11BI	GGWCC	1 cut(s)	202
XceI	RCATGY	1 cut(s)	287
XhoI	CTCGAG	1 cut(s)	289
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.