Rh4CG044100

UDP-glucuronate 4-epimerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0022973
Physical Location & Seq
Forward (+)
8842643 .. 8842996
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG044100.1

Sequence Viewer

Length: 354 bp
ATGCAGCTGAGGGATCCCCGTCGTCATCATTATCGGAGAGACCGGTTCCCATCGAAACAAGGCCGAGTGGTAGGCCAAGTTCGCGTCGGCGCTGTCTTCAGCCACGAAGATCCGGATCTACCACGCCACGCCACTGTCTGCGCTGGGTGCTCCGTTTACGGCTTAAACGACAAGGTCTTGTTCTCGGGATCCGACCGGACGGACCAGCCGGCAAGCCTCTACGCAGCGACAAACAAAGCCGGCGAGGCCCACACAATCGACGGCGGAGGATTGGCCGATTTACATGCCTCGAGAAGAGTAATGAGGTTGGCGATGTTGCTGTGGTCCTCCATGATGTATCGGACTCCGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
ko00520 ko01100 map00520 map01100
Pfam Domains
Protein Families
Epimerase GDP_Man_Dehyd

Protein Analysis

117

Amino Acids

13.02

Weight (kDa)

9.9

Isoelectric Point (pI)

43.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022973)

Species Orthologous Gene IDs
rosa_laevigata RLG00000030228
rosa_multiflora Rmu_sc0003725.1_g000013
rosa_samantha Rh1AG352000 Rh4CG044100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 84
AccIII TCCGGA 1 cut(s) 112
AciI CCGC 1 cut(s) 264
AclWI GGATC 6 cut(s) 8, 21, 104, 123, 183, 196
AcoI YGGCCR 1 cut(s) 273
AcuI CTGAAG 1 cut(s) 82
AgeI ACCGGT 1 cut(s) 42
AluBI AGCT 1 cut(s) 7
AluI AGCT 1 cut(s) 7
Alw21I GWGCWC 1 cut(s) 152
Alw26I GTCTC 1 cut(s) 33
AlwI GGATC 6 cut(s) 8, 21, 104, 123, 183, 196
Ama87I CYCGRG 2 cut(s) 184, 289
Aor13HI TCCGGA 1 cut(s) 112
AoxI GGCC 5 cut(s) 61, 73, 246, 273, 348
ApeKI GCWGC 2 cut(s) 4, 224
AsiGI ACCGGT 1 cut(s) 42
AspLEI GCGC 2 cut(s) 92, 143
AspS9I GGNCC 3 cut(s) 202, 247, 324
AvaI CYCGRG 2 cut(s) 184, 289
AvaII GGWCC 2 cut(s) 202, 324
BamHI GGATCC 2 cut(s) 13, 188
BbsI GAAGAC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 152
BbvCI CCTCAGC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 16, 236
BccI CCATC 1 cut(s) 58
BceAI ACGGC 2 cut(s) 175, 277
BcgI CGANNNNNNTGC 2 cut(s) 266, 300
BcoDI GTCTC 1 cut(s) 33
BfoI RGCGCY 1 cut(s) 93
BglI GCCNNNNNGGC 1 cut(s) 245
BisI GCNGC 2 cut(s) 5, 225
BlsI GCNGC 2 cut(s) 6, 226
Bme18I GGWCC 2 cut(s) 202, 324
BmeT110I CYCGRG 2 cut(s) 184, 289
BmgT120I GGNCC 3 cut(s) 202, 247, 324
BmiI GGNNCC 3 cut(s) 15, 47, 190
BpiI GAAGAC 1 cut(s) 88
Bpu10I CCTNAGC 1 cut(s) 8
BsaBI GATNNNNATC 1 cut(s) 114
BsaI GGTCTC 1 cut(s) 33
BsaWI WCCGGW 3 cut(s) 42, 112, 195
Bse118I RCCGGY 3 cut(s) 42, 208, 239
Bse8I GATNNNNATC 1 cut(s) 114
BseAI TCCGGA 1 cut(s) 112
BseJI GATNNNNATC 1 cut(s) 114
BseXI GCAGC 2 cut(s) 16, 236
BseYI CCCAGC 1 cut(s) 143
Bsh1236I CGCG 1 cut(s) 84
Bsh1285I CGRYCG 1 cut(s) 196
BshFI GGCC 5 cut(s) 63, 75, 248, 275, 350
BshTI ACCGGT 1 cut(s) 42
BsiEI CGRYCG 1 cut(s) 196
BsiHKAI GWGCWC 1 cut(s) 152
BsiHKCI CYCGRG 2 cut(s) 184, 289
BsiSI CCGG 6 cut(s) 43, 113, 196, 209, 240, 347
BsmAI GTCTC 1 cut(s) 33
BsnI GGCC 5 cut(s) 63, 75, 248, 275, 350
Bso31I GGTCTC 1 cut(s) 33
BsoBI CYCGRG 2 cut(s) 184, 289
Bsp1286I GDGCHC 1 cut(s) 152
Bsp13I TCCGGA 1 cut(s) 112
Bsp143I GATC 4 cut(s) 13, 109, 115, 188
BspACI CCGC 1 cut(s) 264
BspANI GGCC 5 cut(s) 63, 75, 248, 275, 350
BspEI TCCGGA 1 cut(s) 112
BspFNI CGCG 1 cut(s) 84
BspLI GGNNCC 3 cut(s) 15, 47, 190
BspPI GGATC 6 cut(s) 8, 21, 104, 123, 183, 196
BspTNI GGTCTC 1 cut(s) 33
BsrFI RCCGGY 3 cut(s) 42, 208, 239
BssAI RCCGGY 3 cut(s) 42, 208, 239
BssMI GATC 4 cut(s) 13, 109, 115, 188
Bst4CI ACNGT 1 cut(s) 136
Bst6I CTCTTC 1 cut(s) 289
BstC8I GCNNGC 3 cut(s) 210, 214, 241
BstDEI CTNAG 1 cut(s) 8
BstFNI CGCG 1 cut(s) 84
BstH2I RGCGCY 1 cut(s) 93
BstHHI GCGC 2 cut(s) 92, 143
BstKTI GATC 4 cut(s) 16, 112, 118, 191
BstMAI GTCTC 1 cut(s) 33
BstMBI GATC 4 cut(s) 13, 109, 115, 188
BstMCI CGRYCG 1 cut(s) 196
BstMWI GCNNNNNNNGC 3 cut(s) 81, 147, 245
BstNSI RCATGY 1 cut(s) 287
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 2 cut(s) 16, 236
BstV2I GAAGAC 1 cut(s) 88
BstX2I RGATCY 4 cut(s) 13, 109, 115, 188
BstYI RGATCY 4 cut(s) 13, 109, 115, 188
BsuRI GGCC 5 cut(s) 63, 75, 248, 275, 350
BtgZI GCGATG 1 cut(s) 326
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 3 cut(s) 210, 214, 241
CfoI GCGC 2 cut(s) 92, 143
Cfr10I RCCGGY 3 cut(s) 42, 208, 239
Cfr13I GGNCC 3 cut(s) 202, 247, 324
CseI GACGC 1 cut(s) 73
CspAI ACCGGT 1 cut(s) 42
CviAII CATG 2 cut(s) 284, 331
DdeI CTNAG 1 cut(s) 8
DpnI GATC 4 cut(s) 15, 111, 117, 190
DpnII GATC 4 cut(s) 13, 109, 115, 188
EaeI YGGCCR 1 cut(s) 273
Eam1104I CTCTTC 1 cut(s) 289
EarI CTCTTC 1 cut(s) 289
EciI GGCGGA 1 cut(s) 279
Eco31I GGTCTC 1 cut(s) 33
Eco47I GGWCC 2 cut(s) 202, 324
Eco57I CTGAAG 1 cut(s) 82
Eco88I CYCGRG 2 cut(s) 184, 289
FaeI CATG 2 cut(s) 287, 334
FaiI YATR 2 cut(s) 285, 332
FatI CATG 2 cut(s) 283, 330
Fnu4HI GCNGC 2 cut(s) 5, 225
Fsp4HI GCNGC 2 cut(s) 5, 225
GlaI GCGC 2 cut(s) 91, 142
GluI GCNGC 2 cut(s) 5, 225
GsaI CCCAGC 1 cut(s) 147
HaeII RGCGCY 1 cut(s) 93
HaeIII GGCC 5 cut(s) 63, 75, 248, 275, 350
HapII CCGG 6 cut(s) 43, 113, 196, 209, 240, 347
HgaI GACGC 1 cut(s) 73
HhaI GCGC 2 cut(s) 92, 143
Hin1II CATG 2 cut(s) 287, 334
Hin6I GCGC 2 cut(s) 90, 141
HinP1I GCGC 2 cut(s) 90, 141
HinfI GANTC 1 cut(s) 343
HpaII CCGG 6 cut(s) 43, 113, 196, 209, 240, 347
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 3 cut(s) 36, 193, 342
Hpy188III TCNNGA 3 cut(s) 113, 186, 291
Hpy8I GTNNAC 1 cut(s) 157
Hpy99I CGWCG 3 cut(s) 24, 89, 263
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 3 cut(s) 81, 147, 245
HpyF3I CTNAG 1 cut(s) 8
Hsp92II CATG 2 cut(s) 287, 334
HspAI GCGC 2 cut(s) 90, 141
Kpn2I TCCGGA 1 cut(s) 112
KroI GCCGGC 2 cut(s) 208, 239
KroNI GCCGGC 2 cut(s) 210, 241
Kzo9I GATC 4 cut(s) 13, 109, 115, 188
LmnI GCTCC 1 cut(s) 155
LpnPI CCDG 7 cut(s) 56, 126, 129, 209, 218, 222, 253
Lsp1109I GCAGC 2 cut(s) 16, 236
MalI GATC 4 cut(s) 15, 111, 117, 190
MboI GATC 4 cut(s) 13, 109, 115, 188
MboII GAAGA 3 cut(s) 88, 119, 306
MflI RGATCY 4 cut(s) 13, 109, 115, 188
MhlI GDGCHC 1 cut(s) 152
MlyI GAGTC 1 cut(s) 337
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 7 cut(s) 3, 227, 238, 260, 297, 298, 337
MroI TCCGGA 1 cut(s) 112
MroNI GCCGGC 2 cut(s) 208, 239
MseI TTAA 1 cut(s) 164
MspA1I CMGCKG 1 cut(s) 7
MspI CCGG 6 cut(s) 43, 113, 196, 209, 240, 347
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 3 cut(s) 81, 147, 245
NaeI GCCGGC 2 cut(s) 210, 241
NdeII GATC 4 cut(s) 13, 109, 115, 188
NgoMIV GCCGGC 2 cut(s) 208, 239
NlaIII CATG 2 cut(s) 287, 334
NlaIV GGNNCC 3 cut(s) 15, 47, 190
NmeAIII GCCGAG 1 cut(s) 89
NspI RCATGY 1 cut(s) 287
PaeR7I CTCGAG 1 cut(s) 289
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PdiI GCCGGC 2 cut(s) 210, 241
PflFI GACNNNGTC 1 cut(s) 173
PinAI ACCGGT 1 cut(s) 42
PkrI GCNGC 2 cut(s) 6, 226
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
PspFI CCCAGC 1 cut(s) 143
PspN4I GGNNCC 3 cut(s) 15, 47, 190
PspPI GGNCC 3 cut(s) 202, 247, 324
PsrI GAACNNNNNNTAC 2 cut(s) 63, 95
PsuI RGATCY 4 cut(s) 13, 109, 115, 188
PsyI GACNNNGTC 1 cut(s) 173
PvuII CAGCTG 1 cut(s) 7
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 2 cut(s) 5, 225
Sau3AI GATC 4 cut(s) 13, 109, 115, 188
Sau96I GGNCC 3 cut(s) 202, 247, 324
SchI GAGTC 1 cut(s) 337
SduI GDGCHC 1 cut(s) 152
SetI ASST 3 cut(s) 9, 177, 308
Sfr274I CTCGAG 1 cut(s) 289
SinI GGWCC 2 cut(s) 202, 324
SlaI CTCGAG 1 cut(s) 289
SmlI CTYRAG 1 cut(s) 289
SmoI CTYRAG 1 cut(s) 289
SsiI CCGC 1 cut(s) 264
TaaI ACNGT 1 cut(s) 136
TaqI TCGA 3 cut(s) 53, 258, 290
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TscAI CASTG 1 cut(s) 139
TseI GCWGC 2 cut(s) 4, 224
TspGWI ACGGA 2 cut(s) 142, 215
TspRI CASTG 1 cut(s) 139
Tth111I GACNNNGTC 1 cut(s) 173
VpaK11BI GGWCC 2 cut(s) 202, 324
XceI RCATGY 1 cut(s) 287
XhoI CTCGAG 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.