RLG00000031524

ATP synthase gamma chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0018673
Physical Location & Seq
Forward (+)
5909499 .. 5910122
624 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031524

Sequence Viewer

Length: 546 bp
ATGAACCCCAGCGATCCGCTGCGGTCTATGGTACGAAGAGCTCAAGACGCAGTCATCAATGGCTGGCCCTTCTCTGAGACCCTTGTGGAGGTTTTATACGACATCAATGAGCAGCTTCAAGGTGAAGACGCTGATATCCCTTTGACTAATGTTAGACCTGTCAAGAAAGTAGCCCTTATGGTCATTACCAGTGATAAAGGTCTCTGTGGTGGTTTCAACAATGCATTGACTAAGAAAGCGCAGACCCGAATTGTGGAGTTGAGGAAATTTGGATTGGAGGTGGTTCTGATCAGCGTTGGGAAGAAGGGAAACTCGTATTTTATGCGTAGGCTGGAGATTAAGGTGGATAGGTTGACGGAAGGAGAGGCGTTTCCAACTGCGAAAGCAACTTCAATCAACTTAAATCCCCTTCTCAATCTGATAGCTTCTTTTCCTTTGATTATCGTCATTCCCTCCTTCTCTTCTTTTTGCTTCATCTTCACCATTTATGGGTTCTTACAGAGAAGGGAAGAGAGAAGGGAAGGGAAGAAGAAGAAAAGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009544 GO:0009579 GO:0009987 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0022603 GO:0030234 GO:0031976 GO:0031984 GO:0032991 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046034 GO:0046390 GO:0046483 GO:0050789 GO:0050790 GO:0050793 GO:0051179 GO:0051234 GO:0051239 GO:0055035 GO:0055085 GO:0055086 GO:0065007 GO:0065009 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098772 GO:0098796 GO:0098807 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1905421 GO:2000026 GO:2000067 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko00190 ko00195 ko01100 map00190 map00195 map01100
Pfam Domains
Protein Families
ATP-synt

Protein Analysis

182

Amino Acids

20.46

Weight (kDa)

9.76

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt PF00231 10 - 129 4.8e-21 ATP synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018673)

Species Orthologous Gene IDs
rosa_laevigata RLG00000031524
rosa_multiflora Rmu_sc0003705.1_g000001
rosa_rugosa Rorug02G0034600 Rorug03G0283200 Rorug05G0464800 Rorug06G0294000
rosa_samantha Rh2AG400300 Rh2BG407800 Rh2CG386500 Rh2DG420200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 17, 22
AclWI GGATC 1 cut(s) 8
AcsI RAATTY 1 cut(s) 266
AfaI GTAC 1 cut(s) 33
AfiI CCNNNNNNNGG 3 cut(s) 88, 253, 489
AgsI TTSAA 3 cut(s) 119, 217, 393
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AluBI AGCT 3 cut(s) 41, 115, 425
AluI AGCT 3 cut(s) 41, 115, 425
Alw21I GWGCWC 1 cut(s) 43
Alw26I GTCTC 2 cut(s) 71, 206
AlwI GGATC 1 cut(s) 8
AoxI GGCC 1 cut(s) 65
ApeKI GCWGC 2 cut(s) 19, 112
ApoI RAATTY 1 cut(s) 266
AspLEI GCGC 1 cut(s) 241
AspS9I GGNCC 1 cut(s) 66
AsuHPI GGTGA 2 cut(s) 134, 472
BanII GRGCYC 1 cut(s) 43
BbsI GAAGAC 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 43
BbvI GCAGC 2 cut(s) 6, 124
BclI TGATCA 1 cut(s) 288
BcoDI GTCTC 2 cut(s) 71, 206
BisI GCNGC 2 cut(s) 20, 113
BlsI GCNGC 2 cut(s) 21, 114
BmgT120I GGNCC 1 cut(s) 66
BpiI GAAGAC 1 cut(s) 132
BpmI CTGGAG 1 cut(s) 353
BpuEI CTTGAG 1 cut(s) 27
BsaI GGTCTC 2 cut(s) 71, 206
Bsc4I CCNNNNNNNGG 3 cut(s) 88, 253, 489
Bse1I ACTGG 1 cut(s) 189
BseLI CCNNNNNNNGG 3 cut(s) 88, 253, 489
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 1 cut(s) 189
BseXI GCAGC 2 cut(s) 6, 124
BseYI CCCAGC 1 cut(s) 8
BshFI GGCC 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 43
BslI CCNNNNNNNGG 3 cut(s) 88, 253, 489
BsmAI GTCTC 2 cut(s) 71, 206
BsnI GGCC 1 cut(s) 67
Bso31I GGTCTC 2 cut(s) 71, 206
Bsp1286I GDGCHC 1 cut(s) 43
Bsp143I GATC 2 cut(s) 13, 288
BspACI CCGC 2 cut(s) 17, 22
BspANI GGCC 1 cut(s) 67
BspCNI CTCAG 1 cut(s) 67
BspPI GGATC 1 cut(s) 8
BspQI GCTCTTC 1 cut(s) 31
BspTNI GGTCTC 2 cut(s) 71, 206
BsrI ACTGG 1 cut(s) 189
BssMI GATC 2 cut(s) 13, 288
Bst6I CTCTTC 3 cut(s) 31, 466, 504
BstC8I GCNNGC 1 cut(s) 65
BstDEI CTNAG 2 cut(s) 75, 231
BstENI CCTNNNNNAGG 1 cut(s) 86
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 2 cut(s) 16, 291
BstMAI GTCTC 2 cut(s) 71, 206
BstMBI GATC 2 cut(s) 13, 288
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstV1I GCAGC 2 cut(s) 6, 124
BstV2I GAAGAC 1 cut(s) 132
BsuRI GGCC 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 65
CfoI GCGC 1 cut(s) 241
Cfr13I GGNCC 1 cut(s) 66
CseI GACGC 2 cut(s) 56, 137
Csp6I GTAC 1 cut(s) 32
CviAII CATG 1 cut(s) 543
CviJI RGCY 7 cut(s) 41, 63, 67, 115, 173, 331, 425
CviKI_1 RGCY 7 cut(s) 41, 63, 67, 115, 173, 331, 425
CviQI GTAC 1 cut(s) 32
DdeI CTNAG 2 cut(s) 75, 231
DpnI GATC 2 cut(s) 15, 290
DpnII GATC 2 cut(s) 13, 288
Eam1104I CTCTTC 3 cut(s) 31, 466, 504
EarI CTCTTC 3 cut(s) 31, 466, 504
Ecl136II GAGCTC 1 cut(s) 41
Eco24I GRGCYC 1 cut(s) 43
Eco31I GGTCTC 2 cut(s) 71, 206
Eco32I GATATC 1 cut(s) 136
Eco53kI GAGCTC 1 cut(s) 41
EcoICRI GAGCTC 1 cut(s) 41
EcoNI CCTNNNNNAGG 1 cut(s) 86
EcoRV GATATC 1 cut(s) 136
EcoT22I ATGCAT 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 43
FaeI CATG 1 cut(s) 546
FaiI YATR 6 cut(s) 29, 97, 179, 323, 489, 544
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FatI CATG 1 cut(s) 542
FbaI TGATCA 1 cut(s) 288
Fnu4HI GCNGC 2 cut(s) 20, 113
FriOI GRGCYC 1 cut(s) 43
Fsp4HI GCNGC 2 cut(s) 20, 113
GlaI GCGC 1 cut(s) 240
GluI GCNGC 2 cut(s) 20, 113
GsaI CCCAGC 1 cut(s) 12
GsuI CTGGAG 1 cut(s) 353
HaeIII GGCC 1 cut(s) 67
HgaI GACGC 2 cut(s) 56, 137
HhaI GCGC 1 cut(s) 241
Hin1II CATG 1 cut(s) 546
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HincII GTYRAC 1 cut(s) 354
HindII GTYRAC 1 cut(s) 354
HphI GGTGA 2 cut(s) 134, 472
Hpy166II GTNNAC 1 cut(s) 354
Hpy188I TCNGA 3 cut(s) 76, 288, 420
Hpy188III TCNNGA 2 cut(s) 44, 163
Hpy8I GTNNAC 1 cut(s) 354
HpyAV CCTTC 8 cut(s) 79, 298, 353, 419, 466, 498, 510, 515
HpyCH4V TGCA 1 cut(s) 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 2 cut(s) 75, 231
Hsp92II CATG 1 cut(s) 546
HspAI GCGC 1 cut(s) 239
Ksp22I TGATCA 1 cut(s) 288
Kzo9I GATC 2 cut(s) 13, 288
LguI GCTCTTC 1 cut(s) 31
LpnPI CCDG 5 cut(s) 22, 49, 171, 202, 317
Lsp1109I GCAGC 2 cut(s) 6, 124
MalI GATC 2 cut(s) 15, 290
MboI GATC 2 cut(s) 13, 288
MboII GAAGA 9 cut(s) 48, 137, 313, 453, 469, 521, 538, 541, 544
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 2 cut(s) 249, 266
MmeI TCCRAC 1 cut(s) 398
MnlI CCTC 5 cut(s) 82, 255, 271, 358, 463
Mph1103I ATGCAT 1 cut(s) 226
MseI TTAA 2 cut(s) 339, 401
MspA1I CMGCKG 1 cut(s) 19
MwoI GCNNNNNNNGC 1 cut(s) 47
NdeII GATC 2 cut(s) 13, 288
NlaIII CATG 1 cut(s) 546
NsiI ATGCAT 1 cut(s) 226
PciSI GCTCTTC 1 cut(s) 31
PflFI GACNNNGTC 1 cut(s) 50
PkrI GCNGC 2 cut(s) 21, 114
Psp124BI GAGCTC 1 cut(s) 43
PspFI CCCAGC 1 cut(s) 8
PspPI GGNCC 1 cut(s) 66
PsyI GACNNNGTC 1 cut(s) 50
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
SacI GAGCTC 1 cut(s) 43
SapI GCTCTTC 1 cut(s) 31
SaqAI TTAA 2 cut(s) 339, 401
SatI GCNGC 2 cut(s) 20, 113
Sau3AI GATC 2 cut(s) 13, 288
Sau96I GGNCC 1 cut(s) 66
SduI GDGCHC 1 cut(s) 43
SmlI CTYRAG 1 cut(s) 42
SmoI CTYRAG 1 cut(s) 42
Sse9I AATT 2 cut(s) 249, 266
SsiI CCGC 2 cut(s) 17, 22
SstI GAGCTC 1 cut(s) 43
TasI AATT 2 cut(s) 249, 266
Tru1I TTAA 2 cut(s) 339, 401
Tru9I TTAA 2 cut(s) 339, 401
TscAI CASTG 1 cut(s) 196
TseI GCWGC 2 cut(s) 19, 112
TspDTI ATGAA 2 cut(s) 17, 463
TspGWI ACGGA 1 cut(s) 371
TspRI CASTG 1 cut(s) 196
Tth111I GACNNNGTC 1 cut(s) 50
XagI CCTNNNNNAGG 1 cut(s) 86
XapI RAATTY 1 cut(s) 266
Zsp2I ATGCAT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.