Rorug05G0464800

ATP synthase gamma chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0018673
Physical Location & Seq
Forward (+)
64068089 .. 64069220
1132 bp
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UTR
Exon/CDS
Intron
Rorug05G0464800.1

Sequence Viewer

Length: 231 bp
ATGTCTGGGTGTGGATCAACAAGCTGCAAATGCGGTTCTGGCTGCAAATGCGGCTCTAGCTGCAACTGTGGAAACTACCCAGATCTTGAGAGCAGCACAACAGCAACCATCATTGCTGGGGTTCCATCAACCAACGTGTGCTTTGAGGAGTCAGAGATGAGCTTCGGTGCTGAAAATGGCTGCAAGTGCGGCCAAAGCTGCAGCTGCACCTCATGCGGCTGCCACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009544 GO:0009579 GO:0009987 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0022603 GO:0030234 GO:0031976 GO:0031984 GO:0032991 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046034 GO:0046390 GO:0046483 GO:0050789 GO:0050790 GO:0050793 GO:0051179 GO:0051234 GO:0051239 GO:0055035 GO:0055085 GO:0055086 GO:0065007 GO:0065009 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098772 GO:0098796 GO:0098807 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1905421 GO:2000026 GO:2000067 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko00190 ko00195 ko01100 map00190 map00195 map01100
Pfam Domains
Protein Families
ATP-synt

Protein Analysis

76

Amino Acids

7.58

Weight (kDa)

5.05

Isoelectric Point (pI)

76.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallothio_2 PF01439 1 - 74 3.4e-14 Metallothionein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018673)

Species Orthologous Gene IDs
rosa_laevigata RLG00000031524
rosa_multiflora Rmu_sc0003705.1_g000001
rosa_rugosa Rorug02G0034600 Rorug03G0283200 Rorug05G0464800 Rorug06G0294000
rosa_samantha Rh2AG400300 Rh2BG407800 Rh2CG386500 Rh2DG420200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 33, 51, 189, 216
AclWI GGATC 1 cut(s) 22
AcoI YGGCCR 1 cut(s) 190
AflIII ACRYGT 1 cut(s) 135
AluBI AGCT 5 cut(s) 24, 60, 162, 198, 204
AluI AGCT 5 cut(s) 24, 60, 162, 198, 204
AlwI GGATC 1 cut(s) 22
AoxI GGCC 1 cut(s) 190
ApeKI GCWGC 9 cut(s) 24, 42, 60, 93, 180, 198, 201, 204, 219
BbvI GCAGC 9 cut(s) 11, 29, 47, 105, 167, 185, 191, 206, 213
BccI CCATC 2 cut(s) 116, 133
BfaI CTAG 1 cut(s) 57
BfmI CTRYAG 1 cut(s) 199
BglII AGATCT 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 107
Bse3DI GCAATG 1 cut(s) 111
BseMI GCAATG 1 cut(s) 111
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 9 cut(s) 11, 29, 47, 105, 167, 185, 191, 206, 213
BseYI CCCAGC 1 cut(s) 116
BsgI GTGCAG 1 cut(s) 190
BshFI GGCC 1 cut(s) 192
BsnI GGCC 1 cut(s) 192
Bsp143I GATC 2 cut(s) 14, 82
BspACI CCGC 4 cut(s) 33, 51, 189, 216
BspANI GGCC 1 cut(s) 192
BspLI GGNNCC 1 cut(s) 123
BspMAI CTGCAG 1 cut(s) 203
BspPI GGATC 1 cut(s) 22
BsrDI GCAATG 1 cut(s) 111
BssMI GATC 2 cut(s) 14, 82
Bst4CI ACNGT 1 cut(s) 68
BstAPI GCANNNNNTGC 1 cut(s) 213
BstKTI GATC 2 cut(s) 17, 85
BstMBI GATC 2 cut(s) 14, 82
BstSFI CTRYAG 1 cut(s) 199
BstV1I GCAGC 9 cut(s) 11, 29, 47, 105, 167, 185, 191, 206, 213
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
BsuRI GGCC 1 cut(s) 192
CviAII CATG 1 cut(s) 213
DpnI GATC 2 cut(s) 16, 84
DpnII GATC 2 cut(s) 14, 82
EaeI YGGCCR 1 cut(s) 190
FaeI CATG 1 cut(s) 216
FaiI YATR 1 cut(s) 214
FatI CATG 1 cut(s) 212
FspBI CTAG 1 cut(s) 57
GsaI CCCAGC 1 cut(s) 120
HaeIII GGCC 1 cut(s) 192
Hin1II CATG 1 cut(s) 216
HinfI GANTC 1 cut(s) 149
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 1 cut(s) 86
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 6 cut(s) 27, 45, 63, 183, 201, 207
HpySE526I ACGT 1 cut(s) 135
Hsp92II CATG 1 cut(s) 216
Kzo9I GATC 2 cut(s) 14, 82
LpnPI CCDG 3 cut(s) 24, 93, 102
Lsp1109I GCAGC 9 cut(s) 11, 29, 47, 105, 167, 185, 191, 206, 213
MaeI CTAG 1 cut(s) 57
MaeII ACGT 1 cut(s) 135
MalI GATC 2 cut(s) 16, 84
MboI GATC 2 cut(s) 14, 82
MflI RGATCY 1 cut(s) 82
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 2 cut(s) 139, 220
MspA1I CMGCKG 1 cut(s) 204
NdeII GATC 2 cut(s) 14, 82
NlaIII CATG 1 cut(s) 216
NlaIV GGNNCC 1 cut(s) 123
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PspFI CCCAGC 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 123
PstI CTGCAG 1 cut(s) 203
PsuI RGATCY 1 cut(s) 82
PvuII CAGCTG 1 cut(s) 204
Sau3AI GATC 2 cut(s) 14, 82
SchI GAGTC 1 cut(s) 158
SetI ASST 7 cut(s) 26, 62, 138, 164, 200, 206, 212
SfcI CTRYAG 1 cut(s) 199
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
SsiI CCGC 4 cut(s) 33, 51, 189, 216
SspMI CTAG 1 cut(s) 57
TaaI ACNGT 1 cut(s) 68
TaiI ACGT 1 cut(s) 138
TauI GCSGC 3 cut(s) 54, 192, 219
TseI GCWGC 9 cut(s) 24, 42, 60, 93, 180, 198, 201, 204, 219
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.