Rh2DG420200

ATP synthase gamma chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0018673
Physical Location & Seq
Forward (+)
60968729 .. 60970302
1574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG420200.1

Sequence Viewer

Length: 396 bp
ATGAAGCTTGTAGCGGCTGCCAGGGTACGAAGAGCTCAAGACGCAGTCATCAATGGCTGGCCCTTCTCTGAGACCCTTGTGGAGGTTTTATACGACATCAATGAGCAGCTTCAAGGTGAAGACGTTGATATCCCTTTGACTAATGTTAGACCTGTCAAGAAAGTAACCCTTGTGGTCATTACCAGTGATAGAGGTCTGTGTGGTGGTTTCAACAATGCATTGACTAAGAAAGCGCAGACCCGAATTGTGGAGTTGAGGAAATTTGGATTGGAGGTGGTTCTGATCATCTTTGGGAAGAAGGGAAACTCGTATTTTATGCGTAGGCTGGAGATTAAGGTGGAAAGGTTGATGGAAGGAGGGGCGTTTCCGACTCGAAAGAAACTTCAATCAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009544 GO:0009579 GO:0009987 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0022603 GO:0030234 GO:0031976 GO:0031984 GO:0032991 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046034 GO:0046390 GO:0046483 GO:0050789 GO:0050790 GO:0050793 GO:0051179 GO:0051234 GO:0051239 GO:0055035 GO:0055085 GO:0055086 GO:0065007 GO:0065009 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098772 GO:0098796 GO:0098807 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1905421 GO:2000026 GO:2000067 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko00190 ko00195 ko01100 map00190 map00195 map01100
Pfam Domains
Protein Families
ATP-synt

Protein Analysis

131

Amino Acids

14.76

Weight (kDa)

9.93

Isoelectric Point (pI)

32.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt PF00231 1 - 118 2.4e-26 ATP synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018673)

Species Orthologous Gene IDs
rosa_laevigata RLG00000031524
rosa_multiflora Rmu_sc0003705.1_g000001
rosa_rugosa Rorug02G0034600 Rorug03G0283200 Rorug05G0464800 Rorug06G0294000
rosa_samantha Rh2AG400300 Rh2BG407800 Rh2CG386500 Rh2DG420200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 14
AcsI RAATTY 1 cut(s) 260
AfaI GTAC 1 cut(s) 27
AfiI CCNNNNNNNGG 2 cut(s) 82, 247
AgsI TTSAA 3 cut(s) 113, 211, 386
AjnI CCWGG 1 cut(s) 20
AjuI GAANNNNNNNTTGG 2 cut(s) 251, 283
AluBI AGCT 3 cut(s) 7, 35, 109
AluI AGCT 3 cut(s) 7, 35, 109
Alw21I GWGCWC 1 cut(s) 37
Alw26I GTCTC 1 cut(s) 65
AoxI GGCC 1 cut(s) 59
ApeKI GCWGC 2 cut(s) 17, 106
ApoI RAATTY 1 cut(s) 260
AspLEI GCGC 1 cut(s) 235
AspS9I GGNCC 1 cut(s) 60
AsuHPI GGTGA 1 cut(s) 128
BanII GRGCYC 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 126
Bbv12I GWGCWC 1 cut(s) 37
BbvI GCAGC 2 cut(s) 4, 118
BccI CCATC 1 cut(s) 343
BciT130I CCWGG 1 cut(s) 22
BclI TGATCA 1 cut(s) 282
BcoDI GTCTC 1 cut(s) 65
BisI GCNGC 3 cut(s) 15, 18, 107
BlsI GCNGC 3 cut(s) 16, 19, 108
Bme1390I CCNGG 1 cut(s) 22
BmgT120I GGNCC 1 cut(s) 60
BmrFI CCNGG 1 cut(s) 22
BpiI GAAGAC 1 cut(s) 126
BpmI CTGGAG 1 cut(s) 347
BpuEI CTTGAG 1 cut(s) 21
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 247
Bse1I ACTGG 1 cut(s) 183
BseBI CCWGG 1 cut(s) 22
BseDI CCNNGG 1 cut(s) 21
BseLI CCNNNNNNNGG 2 cut(s) 82, 247
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 1 cut(s) 183
BseXI GCAGC 2 cut(s) 4, 118
BshFI GGCC 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 37
BslI CCNNNNNNNGG 2 cut(s) 82, 247
BsmAI GTCTC 1 cut(s) 65
BsnI GGCC 1 cut(s) 61
Bso31I GGTCTC 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 1 cut(s) 282
BspACI CCGC 1 cut(s) 14
BspANI GGCC 1 cut(s) 61
BspCNI CTCAG 1 cut(s) 61
BspQI GCTCTTC 1 cut(s) 25
BspTNI GGTCTC 1 cut(s) 65
BsrI ACTGG 1 cut(s) 183
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 22
Bst6I CTCTTC 1 cut(s) 25
BstC8I GCNNGC 1 cut(s) 59
BstDEI CTNAG 2 cut(s) 69, 225
BstENI CCTNNNNNAGG 1 cut(s) 80
BstHHI GCGC 1 cut(s) 235
BstKTI GATC 1 cut(s) 285
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 1 cut(s) 282
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 20
BstV1I GCAGC 2 cut(s) 4, 118
BstV2I GAAGAC 1 cut(s) 126
BsuRI GGCC 1 cut(s) 61
BtsIMutI CAGTG 1 cut(s) 190
Cac8I GCNNGC 1 cut(s) 59
CfoI GCGC 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 60
CseI GACGC 1 cut(s) 50
Csp6I GTAC 1 cut(s) 26
CviJI RGCY 7 cut(s) 7, 17, 35, 57, 61, 109, 325
CviKI_1 RGCY 7 cut(s) 7, 17, 35, 57, 61, 109, 325
CviQI GTAC 1 cut(s) 26
DdeI CTNAG 2 cut(s) 69, 225
DpnI GATC 1 cut(s) 284
DpnII GATC 1 cut(s) 282
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
Ecl136II GAGCTC 1 cut(s) 35
Eco24I GRGCYC 1 cut(s) 37
Eco31I GGTCTC 1 cut(s) 65
Eco32I GATATC 1 cut(s) 130
Eco53kI GAGCTC 1 cut(s) 35
EcoICRI GAGCTC 1 cut(s) 35
EcoNI CCTNNNNNAGG 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 20
EcoRV GATATC 1 cut(s) 130
EcoT22I ATGCAT 1 cut(s) 220
EcoT38I GRGCYC 1 cut(s) 37
FaiI YATR 2 cut(s) 91, 317
FalI AAGNNNNNCTT 2 cut(s) 153, 185
FbaI TGATCA 1 cut(s) 282
Fnu4HI GCNGC 3 cut(s) 15, 18, 107
FriOI GRGCYC 1 cut(s) 37
Fsp4HI GCNGC 3 cut(s) 15, 18, 107
GlaI GCGC 1 cut(s) 234
GluI GCNGC 3 cut(s) 15, 18, 107
GsuI CTGGAG 1 cut(s) 347
HaeIII GGCC 1 cut(s) 61
HgaI GACGC 1 cut(s) 50
HhaI GCGC 1 cut(s) 235
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HindIII AAGCTT 1 cut(s) 5
HinfI GANTC 1 cut(s) 370
HphI GGTGA 1 cut(s) 128
Hpy188I TCNGA 3 cut(s) 70, 282, 369
Hpy188III TCNNGA 2 cut(s) 38, 157
HpyAV CCTTC 3 cut(s) 73, 292, 347
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 2 cut(s) 69, 225
HpySE526I ACGT 1 cut(s) 123
HspAI GCGC 1 cut(s) 233
Ksp22I TGATCA 1 cut(s) 282
Kzo9I GATC 1 cut(s) 282
LguI GCTCTTC 1 cut(s) 25
LpnPI CCDG 6 cut(s) 7, 34, 43, 165, 196, 311
Lsp1109I GCAGC 2 cut(s) 4, 118
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 163
MalI GATC 1 cut(s) 284
MboI GATC 1 cut(s) 282
MboII GAAGA 3 cut(s) 42, 131, 307
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 2 cut(s) 243, 260
MlyI GAGTC 1 cut(s) 364
MmeI TCCRAC 1 cut(s) 392
MnlI CCTC 5 cut(s) 76, 185, 249, 265, 350
Mph1103I ATGCAT 1 cut(s) 220
MseI TTAA 2 cut(s) 333, 394
MspR9I CCNGG 1 cut(s) 22
MvaI CCWGG 1 cut(s) 22
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeII GATC 1 cut(s) 282
NsiI ATGCAT 1 cut(s) 220
PciSI GCTCTTC 1 cut(s) 25
PflFI GACNNNGTC 1 cut(s) 44
PkrI GCNGC 3 cut(s) 16, 19, 108
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
Psp124BI GAGCTC 1 cut(s) 37
Psp6I CCWGG 1 cut(s) 20
PspGI CCWGG 1 cut(s) 20
PspPI GGNCC 1 cut(s) 60
PsyI GACNNNGTC 1 cut(s) 44
RsaI GTAC 1 cut(s) 27
RsaNI GTAC 1 cut(s) 26
SacI GAGCTC 1 cut(s) 37
SapI GCTCTTC 1 cut(s) 25
SaqAI TTAA 2 cut(s) 333, 394
SatI GCNGC 3 cut(s) 15, 18, 107
Sau3AI GATC 1 cut(s) 282
Sau96I GGNCC 1 cut(s) 60
SchI GAGTC 1 cut(s) 364
ScrFI CCNGG 1 cut(s) 22
SduI GDGCHC 1 cut(s) 37
SmlI CTYRAG 1 cut(s) 36
SmoI CTYRAG 1 cut(s) 36
Sse9I AATT 2 cut(s) 243, 260
SsiI CCGC 1 cut(s) 14
SstI GAGCTC 1 cut(s) 37
StyD4I CCNGG 1 cut(s) 20
TaiI ACGT 1 cut(s) 126
TaqI TCGA 1 cut(s) 373
TasI AATT 2 cut(s) 243, 260
TauI GCSGC 1 cut(s) 17
Tru1I TTAA 2 cut(s) 333, 394
Tru9I TTAA 2 cut(s) 333, 394
TscAI CASTG 1 cut(s) 190
TseI GCWGC 2 cut(s) 17, 106
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 190
Tth111I GACNNNGTC 1 cut(s) 44
XagI CCTNNNNNAGG 1 cut(s) 80
XapI RAATTY 1 cut(s) 260
Zsp2I ATGCAT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.