Rh2BG407800

ATP synthase gamma chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0018673
Physical Location & Seq
Reverse (-)
57802847 .. 57806255
3409 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG407800.1

Sequence Viewer

Length: 510 bp
ATGGGTACCCATACCCATGGGTTAAAATGCCATCCCTATTCCCAATCTCCACGAACCCCAGCGATCCGCTGCGGTCTGTGTGAGCTCCGAGAGCGAATTGATTCCATTAAGAGCACCCAGAAAATCACAGAAGCCATGAAGCTTGTAGCGGCTGCCAGGGTACGAAGAGCTCAAGACGCAGTCATCAATGGCTGGCCCTTCTCTGAGACCCTTGTGGAGGTTTTATACGACATCAATGAGCAGCTTCAAGGTGAAGACGTTGATAACCCTTTGACTAATGTTAGACCTGTCAAGAAAGTAACCCTTGTGGTCATTACCAGTGATAGAGGTCTGTGTGGTGGTTTCAACAATGCATTGACTAAGAAAGCACAGACCCGAATTGTGGAGTTGAGGAAATTTGGATTGGAGGTGGTTCTGATCAGCGTTGGGAAGAAGGGAAACTCGTATTTTATGCGTAGGCTGGAGATTAAGGTGGATAGGTTGATGGAAGGAGGGGCGTTTCCGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009544 GO:0009579 GO:0009987 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0022603 GO:0030234 GO:0031976 GO:0031984 GO:0032991 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046034 GO:0046390 GO:0046483 GO:0050789 GO:0050790 GO:0050793 GO:0051179 GO:0051234 GO:0051239 GO:0055035 GO:0055085 GO:0055086 GO:0065007 GO:0065009 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098772 GO:0098796 GO:0098807 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1905421 GO:2000026 GO:2000067 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko00190 ko00195 ko01100 map00190 map00195 map01100
Pfam Domains
Protein Families
ATP-synt

Protein Analysis

169

Amino Acids

18.87

Weight (kDa)

9.54

Isoelectric Point (pI)

30.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt PF00231 27 - 159 1.7e-37 ATP synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018673)

Species Orthologous Gene IDs
rosa_laevigata RLG00000031524
rosa_multiflora Rmu_sc0003705.1_g000001
rosa_rugosa Rorug02G0034600 Rorug03G0283200 Rorug05G0464800 Rorug06G0294000
rosa_samantha Rh2AG400300 Rh2BG407800 Rh2CG386500 Rh2DG420200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 5
AccB1I GGYRCC 1 cut(s) 5
AciI CCGC 3 cut(s) 67, 72, 149
AclWI GGATC 1 cut(s) 58
AcsI RAATTY 1 cut(s) 395
AfaI GTAC 2 cut(s) 7, 162
AfiI CCNNNNNNNGG 2 cut(s) 217, 382
AgsI TTSAA 2 cut(s) 248, 346
AjnI CCWGG 1 cut(s) 155
AjuI GAANNNNNNNTTGG 2 cut(s) 386, 418
AluBI AGCT 4 cut(s) 85, 142, 170, 244
AluI AGCT 4 cut(s) 85, 142, 170, 244
Alw21I GWGCWC 3 cut(s) 87, 116, 172
Alw26I GTCTC 1 cut(s) 200
AlwI GGATC 1 cut(s) 58
AoxI GGCC 1 cut(s) 194
ApeKI GCWGC 3 cut(s) 69, 152, 241
ApoI RAATTY 1 cut(s) 395
Asp700I GAANNNNTTC 1 cut(s) 100
Asp718I GGTACC 1 cut(s) 5
AspS9I GGNCC 1 cut(s) 195
AsuHPI GGTGA 1 cut(s) 263
BanI GGYRCC 1 cut(s) 5
BanII GRGCYC 2 cut(s) 87, 172
BbsI GAAGAC 1 cut(s) 261
Bbv12I GWGCWC 3 cut(s) 87, 116, 172
BbvI GCAGC 3 cut(s) 56, 139, 253
BccI CCATC 2 cut(s) 39, 478
BciT130I CCWGG 1 cut(s) 157
BclI TGATCA 1 cut(s) 417
BcoDI GTCTC 1 cut(s) 200
BisI GCNGC 4 cut(s) 70, 150, 153, 242
BlsI GCNGC 4 cut(s) 71, 151, 154, 243
Bme1390I CCNGG 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 195
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 157
BpiI GAAGAC 1 cut(s) 261
BpmI CTGGAG 1 cut(s) 482
BpuEI CTTGAG 1 cut(s) 156
BsaI GGTCTC 1 cut(s) 200
BsaJI CCNNGG 2 cut(s) 16, 156
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 382
Bse1I ACTGG 1 cut(s) 318
BseBI CCWGG 1 cut(s) 157
BseDI CCNNGG 2 cut(s) 16, 156
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 2 cut(s) 217, 382
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 318
BseXI GCAGC 3 cut(s) 56, 139, 253
BseYI CCCAGC 1 cut(s) 58
BshFI GGCC 1 cut(s) 196
BshNI GGYRCC 1 cut(s) 5
BsiHKAI GWGCWC 3 cut(s) 87, 116, 172
BslI CCNNNNNNNGG 2 cut(s) 217, 382
BsmAI GTCTC 1 cut(s) 200
BsnI GGCC 1 cut(s) 196
Bso31I GGTCTC 1 cut(s) 200
Bsp1286I GDGCHC 3 cut(s) 87, 116, 172
Bsp143I GATC 2 cut(s) 63, 417
Bsp19I CCATGG 1 cut(s) 16
BspACI CCGC 3 cut(s) 67, 72, 149
BspANI GGCC 1 cut(s) 196
BspCNI CTCAG 1 cut(s) 196
BspLI GGNNCC 1 cut(s) 7
BspPI GGATC 1 cut(s) 58
BspQI GCTCTTC 1 cut(s) 160
BspT107I GGYRCC 1 cut(s) 5
BspTNI GGTCTC 1 cut(s) 200
BsrI ACTGG 1 cut(s) 318
BssECI CCNNGG 2 cut(s) 16, 156
BssMI GATC 2 cut(s) 63, 417
BssT1I CCWWGG 1 cut(s) 16
Bst2UI CCWGG 1 cut(s) 157
Bst6I CTCTTC 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 194
BstDEI CTNAG 2 cut(s) 204, 360
BstDSI CCRYGG 1 cut(s) 16
BstENI CCTNNNNNAGG 1 cut(s) 215
BstF5I GGATG 1 cut(s) 31
BstKTI GATC 2 cut(s) 66, 420
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 2 cut(s) 63, 417
BstMWI GCNNNNNNNGC 2 cut(s) 91, 176
BstNI CCWGG 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 155
BstV1I GCAGC 3 cut(s) 56, 139, 253
BstV2I GAAGAC 1 cut(s) 261
BstXI CCANNNNNNTGG 1 cut(s) 17
BsuRI GGCC 1 cut(s) 196
BtgI CCRYGG 1 cut(s) 16
BtsCI GGATG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 194
Cfr13I GGNCC 1 cut(s) 195
CseI GACGC 1 cut(s) 185
Csp6I GTAC 2 cut(s) 6, 161
CviAII CATG 2 cut(s) 17, 136
CviJI RGCY 9 cut(s) 85, 134, 142, 152, 170, 192, 196, 244, 460
CviKI_1 RGCY 9 cut(s) 85, 134, 142, 152, 170, 192, 196, 244, 460
CviQI GTAC 2 cut(s) 6, 161
DdeI CTNAG 2 cut(s) 204, 360
DpnI GATC 2 cut(s) 65, 419
DpnII GATC 2 cut(s) 63, 417
Eam1104I CTCTTC 1 cut(s) 160
EarI CTCTTC 1 cut(s) 160
Ecl136II GAGCTC 2 cut(s) 85, 170
Eco130I CCWWGG 1 cut(s) 16
Eco24I GRGCYC 2 cut(s) 87, 172
Eco31I GGTCTC 1 cut(s) 200
Eco53kI GAGCTC 2 cut(s) 85, 170
EcoICRI GAGCTC 2 cut(s) 85, 170
EcoNI CCTNNNNNAGG 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 155
EcoT14I CCWWGG 1 cut(s) 16
EcoT22I ATGCAT 1 cut(s) 355
EcoT38I GRGCYC 2 cut(s) 87, 172
ErhI CCWWGG 1 cut(s) 16
FaeI CATG 2 cut(s) 20, 139
FaiI YATR 5 cut(s) 12, 18, 137, 226, 452
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FatI CATG 2 cut(s) 16, 135
FbaI TGATCA 1 cut(s) 417
Fnu4HI GCNGC 4 cut(s) 70, 150, 153, 242
FokI GGATG 1 cut(s) 18
FriOI GRGCYC 2 cut(s) 87, 172
Fsp4HI GCNGC 4 cut(s) 70, 150, 153, 242
GluI GCNGC 4 cut(s) 70, 150, 153, 242
GsaI CCCAGC 1 cut(s) 62
GsuI CTGGAG 1 cut(s) 482
HaeIII GGCC 1 cut(s) 196
HgaI GACGC 1 cut(s) 185
Hin1II CATG 2 cut(s) 20, 139
HindIII AAGCTT 1 cut(s) 140
HinfI GANTC 1 cut(s) 101
HphI GGTGA 1 cut(s) 263
Hpy188I TCNGA 4 cut(s) 89, 205, 417, 504
Hpy188III TCNNGA 2 cut(s) 173, 292
HpyAV CCTTC 3 cut(s) 208, 427, 482
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 1 cut(s) 353
HpyF10VI GCNNNNNNNGC 2 cut(s) 91, 176
HpyF3I CTNAG 2 cut(s) 204, 360
HpySE526I ACGT 1 cut(s) 258
Hsp92II CATG 2 cut(s) 20, 139
KpnI GGTACC 1 cut(s) 9
Ksp22I TGATCA 1 cut(s) 417
Kzo9I GATC 2 cut(s) 63, 417
LguI GCTCTTC 1 cut(s) 160
LmnI GCTCC 1 cut(s) 90
LpnPI CCDG 8 cut(s) 72, 131, 142, 169, 178, 300, 331, 446
Lsp1109I GCAGC 3 cut(s) 56, 139, 253
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 298
MalI GATC 2 cut(s) 65, 419
MboI GATC 2 cut(s) 63, 417
MboII GAAGA 3 cut(s) 177, 266, 442
MhlI GDGCHC 3 cut(s) 87, 116, 172
MluCI AATT 3 cut(s) 96, 378, 395
MnlI CCTC 5 cut(s) 211, 320, 384, 400, 485
Mph1103I ATGCAT 1 cut(s) 355
MroXI GAANNNNTTC 1 cut(s) 100
MseI TTAA 3 cut(s) 23, 108, 468
MslI CAYNNNNRTG 1 cut(s) 15
MspA1I CMGCKG 1 cut(s) 69
MspR9I CCNGG 1 cut(s) 157
MvaI CCWGG 1 cut(s) 157
MwoI GCNNNNNNNGC 2 cut(s) 91, 176
NcoI CCATGG 1 cut(s) 16
NdeII GATC 2 cut(s) 63, 417
NlaIII CATG 2 cut(s) 20, 139
NlaIV GGNNCC 1 cut(s) 7
NsiI ATGCAT 1 cut(s) 355
PciSI GCTCTTC 1 cut(s) 160
PdmI GAANNNNTTC 1 cut(s) 100
PfeI GAWTC 1 cut(s) 101
PflFI GACNNNGTC 1 cut(s) 179
PkrI GCNGC 4 cut(s) 71, 151, 154, 243
Psp124BI GAGCTC 2 cut(s) 87, 172
Psp6I CCWGG 1 cut(s) 155
PspFI CCCAGC 1 cut(s) 58
PspGI CCWGG 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 195
PsyI GACNNNGTC 1 cut(s) 179
RsaI GTAC 2 cut(s) 7, 162
RsaNI GTAC 2 cut(s) 6, 161
RseI CAYNNNNRTG 1 cut(s) 15
SacI GAGCTC 2 cut(s) 87, 172
SapI GCTCTTC 1 cut(s) 160
SaqAI TTAA 3 cut(s) 23, 108, 468
SatI GCNGC 4 cut(s) 70, 150, 153, 242
Sau3AI GATC 2 cut(s) 63, 417
Sau96I GGNCC 1 cut(s) 195
ScrFI CCNGG 1 cut(s) 157
SduI GDGCHC 3 cut(s) 87, 116, 172
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 171
SmoI CTYRAG 1 cut(s) 171
Sse9I AATT 3 cut(s) 96, 378, 395
SsiI CCGC 3 cut(s) 67, 72, 149
SstI GAGCTC 2 cut(s) 87, 172
StyD4I CCNGG 1 cut(s) 155
StyI CCWWGG 1 cut(s) 16
TaiI ACGT 1 cut(s) 261
TasI AATT 3 cut(s) 96, 378, 395
TauI GCSGC 1 cut(s) 152
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 3 cut(s) 23, 108, 468
Tru9I TTAA 3 cut(s) 23, 108, 468
TscAI CASTG 1 cut(s) 325
TseI GCWGC 3 cut(s) 69, 152, 241
TspDTI ATGAA 1 cut(s) 152
TspRI CASTG 1 cut(s) 325
Tth111I GACNNNGTC 1 cut(s) 179
XagI CCTNNNNNAGG 1 cut(s) 215
XapI RAATTY 1 cut(s) 395
XmnI GAANNNNTTC 1 cut(s) 100
Zsp2I ATGCAT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.