Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0021439

Physical Location & Seq

Genomic Coordinates Reverse (-)

13406480 .. 13407403

Gene Structure 924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032311

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGTCGTCGACCCAGTTCTCCCTGGCCAAGCGTCGCACGGCCACCAACAACTTCTCTACAGATAATGTAATTGGAACTGGGAGGAGCGGCCTGATCTACAAGGCCCATCTCTCCAATGGACTCACCGTCGCCATCAAGAACTACGACCCCGATCGATTCCAAGGCTTTCGGGAATTCCGGGCTGAAGCCGAAGCGCTAGGCAAGCTTCGACACCCAAATATCGTTAAGCTTTTGAGTTATCAGGCCTCCGGCTCAGTTATGCTTCTTGTTTATGAGTATGTAGAGAAAGGTAACCTTCACGAACGTCTTCGTGAAAGTTGCTCTTTTTCATGGTTTGACGAGTTTAAGATTCTTAGAGGTGTAGCCAATGGTCTCGCTTATTTGAATGGGTTGGAAAACCCTGTCATTCATAGAGATATTGCGTCTAGAAATGTGTTGGTGGACTCAGATTATGAGCCTCGTATTATTAATTTTGGGCTTTCTAGGACTATTGACAAGTGTCATTCGCTTTCTCATGTGTCAACTGCAGTTGCTGGGTCCATACCGTACATGGCGCCGGAGTACAGGAGTGGGAGCACCAAAGCCTCGGTGAAAGGCGACATGTATAGTTTTGGCATTTTGATGATGGAGACCGTATTACGACCCACAAGGTGTAGTAGATATTTCAACGTTTCAGCTCAAAACAGAGATTTTGATCTTGTAGAATGGGTTAGGGGTATAGAGTTGGACAAGATCATAAGCGACTTTTCTGGCTATTCTGGCTATTTCGTCGATGCTCTATGGCCTGAGTATATTCGGATCGCCTTACTGTGTGCTAATGATAATCCAGAAGATAGGCCTGTGATGAACGAGGTTGTTCAAATGCTAAATCAAATTCTACCTCATACCCCTGCTCCCCCTGCTTCCTCCAGGAGCACCGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0023052 GO:0038023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

308

Amino Acids

34.5

Weight (kDa)

7.7

Isoelectric Point (pI)

32.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	19 - 287	9.8e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	20 - 289	3.2e-40	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021439)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0017751
rosa_laevigata	RLG00000032311
rosa_rugosa	Rorug05G0038300
rosa_samantha	Rh5BG129300 Rh5CG141700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	553
AccBSI	CCGCTC	1 cut(s)	87
AccI	GTMKAC	1 cut(s)	8
AciI	CCGC	1 cut(s)	87
AclI	AACGTT	1 cut(s)	669
AclWI	GGATC	1 cut(s)	806
AcoI	YGGCCR	2 cut(s)	24, 39
AcsI	RAATTY	2 cut(s)	173, 873
AcuI	CTGAAG	1 cut(s)	204
AcyI	GRCGYC	1 cut(s)	554
AdeI	CACNNNGTG	1 cut(s)	651
AfaI	GTAC	2 cut(s)	548, 563
AfeI	AGCGCT	1 cut(s)	195
AflIII	ACRYGT	1 cut(s)	600
AgeI	ACCGGT	1 cut(s)	917
AgsI	TTSAA	3 cut(s)	385, 667, 860
AhdI	GACNNNNNGTC	1 cut(s)	125
AjnI	CCWGG	2 cut(s)	21, 908
AluBI	AGCT	3 cut(s)	205, 229, 677
AluI	AGCT	3 cut(s)	205, 229, 677
Alw21I	GWGCWC	2 cut(s)	578, 917
Alw26I	GTCTC	2 cut(s)	377, 623
AlwI	GGATC	1 cut(s)	806
AlwNI	CAGNNNCTG	1 cut(s)	533
Aor51HI	AGCGCT	1 cut(s)	195
AoxI	GGCC	7 cut(s)	24, 39, 88, 102, 243, 782, 836
ApoI	RAATTY	2 cut(s)	173, 873
AseI	ATTAAT	1 cut(s)	468
AsiGI	ACCGGT	1 cut(s)	917
Asp700I	GAANNNNTTC	1 cut(s)	306
AspLEI	GCGC	2 cut(s)	196, 556
AspS9I	GGNCC	2 cut(s)	103, 537
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	2 cut(s)	115, 601
AvaII	GGWCC	1 cut(s)	537
BalI	TGGCCA	1 cut(s)	26
BanI	GGYRCC	1 cut(s)	553
BbsI	GAAGAC	1 cut(s)	299
Bbv12I	GWGCWC	2 cut(s)	578, 917
BccI	CCATC	3 cut(s)	114, 140, 619
BceAI	ACGGC	1 cut(s)	54
BciT130I	CCWGG	2 cut(s)	23, 910
BcnI	CCSGG	1 cut(s)	179
BcoDI	GTCTC	2 cut(s)	377, 623
BfaI	CTAG	3 cut(s)	197, 426, 483
BfmI	CTRYAG	2 cut(s)	57, 525
BfoI	RGCGCY	2 cut(s)	197, 557
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
Bme1390I	CCNGG	3 cut(s)	23, 179, 910
Bme18I	GGWCC	1 cut(s)	537
BmeRI	GACNNNNNGTC	1 cut(s)	125
BmgT120I	GGNCC	2 cut(s)	103, 537
BmiI	GGNNCC	2 cut(s)	538, 555
BmrFI	CCNGG	3 cut(s)	23, 179, 910
BmrI	ACTGGG	2 cut(s)	7, 87
BmsI	GCATC	1 cut(s)	763
BmuI	ACTGGG	2 cut(s)	7, 87
BoxI	GACNNNNGTC	1 cut(s)	498
BpiI	GAAGAC	1 cut(s)	299
BpmI	CTGGAG	1 cut(s)	892
BpuMI	CCSGG	1 cut(s)	179
Bsa29I	ATCGAT	1 cut(s)	154
BsaBI	GATNNNNATC	1 cut(s)	693
BsaHI	GRCGYC	1 cut(s)	554
BsaI	GGTCTC	2 cut(s)	377, 623
BsaJI	CCNNGG	3 cut(s)	21, 160, 585
BsaWI	WCCGGW	1 cut(s)	917
BsaXI	ACNNNNNCTCC	3 cut(s)	877, 904, 907
Bse118I	RCCGGY	1 cut(s)	917
Bse1I	ACTGG	2 cut(s)	13, 82
Bse8I	GATNNNNATC	1 cut(s)	693
BseBI	CCWGG	2 cut(s)	23, 910
BseCI	ATCGAT	1 cut(s)	154
BseDI	CCNNGG	3 cut(s)	21, 160, 585
BseJI	GATNNNNATC	1 cut(s)	693
BseMII	CTCAG	3 cut(s)	267, 459, 777
BseNI	ACTGG	2 cut(s)	13, 82
BseRI	GAGGAG	1 cut(s)	97
BseYI	CCCAGC	1 cut(s)	533
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	7 cut(s)	26, 41, 90, 104, 245, 784, 838
BshNI	GGYRCC	1 cut(s)	553
BshTI	ACCGGT	1 cut(s)	917
BshVI	ATCGAT	1 cut(s)	154
BsiEI	CGRYCG	1 cut(s)	154
BsiHKAI	GWGCWC	2 cut(s)	578, 917
BsiSI	CCGG	4 cut(s)	178, 249, 557, 918
BsmAI	GTCTC	2 cut(s)	377, 623
BsnI	GGCC	7 cut(s)	26, 41, 90, 104, 245, 784, 838
Bso31I	GGTCTC	2 cut(s)	377, 623
Bsp1286I	GDGCHC	2 cut(s)	578, 917
Bsp143I	GATC	5 cut(s)	93, 151, 694, 732, 798
BspACI	CCGC	1 cut(s)	87
BspANI	GGCC	7 cut(s)	26, 41, 90, 104, 245, 784, 838
BspCNI	CTCAG	3 cut(s)	266, 458, 778
BspDI	ATCGAT	1 cut(s)	154
BspLI	GGNNCC	2 cut(s)	538, 555
BspMAI	CTGCAG	1 cut(s)	529
BspPI	GGATC	1 cut(s)	806
BspT107I	GGYRCC	1 cut(s)	553
BspTNI	GGTCTC	2 cut(s)	377, 623
BsrBI	CCGCTC	1 cut(s)	87
BsrFI	RCCGGY	1 cut(s)	917
BsrI	ACTGG	2 cut(s)	13, 82
BssAI	RCCGGY	1 cut(s)	917
BssECI	CCNNGG	3 cut(s)	21, 160, 585
BssMI	GATC	5 cut(s)	93, 151, 694, 732, 798
BssNI	GRCGYC	1 cut(s)	554
BssT1I	CCWWGG	1 cut(s)	160
Bst2UI	CCWGG	2 cut(s)	23, 910
Bst4CI	ACNGT	4 cut(s)	127, 546, 634, 810
BstACI	GRCGYC	1 cut(s)	554
BstC8I	GCNNGC	1 cut(s)	203
BstDEI	CTNAG	4 cut(s)	253, 353, 445, 786
BstEII	GGTNACC	1 cut(s)	290
BstH2I	RGCGCY	2 cut(s)	197, 557
BstHHI	GCGC	2 cut(s)	196, 556
BstKTI	GATC	5 cut(s)	96, 154, 697, 735, 801
BstMAI	GTCTC	2 cut(s)	377, 623
BstMBI	GATC	5 cut(s)	93, 151, 694, 732, 798
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	3 cut(s)	202, 759, 899
BstNI	CCWGG	2 cut(s)	23, 910
BstNSI	RCATGY	1 cut(s)	604
BstPAI	GACNNNNGTC	1 cut(s)	498
BstPI	GGTNACC	1 cut(s)	290
BstSCI	CCNGG	3 cut(s)	21, 177, 908
BstSFI	CTRYAG	2 cut(s)	57, 525
BstV2I	GAAGAC	1 cut(s)	299
Bsu15I	ATCGAT	1 cut(s)	154
BsuRI	GGCC	7 cut(s)	26, 41, 90, 104, 245, 784, 838
BsuTUI	ATCGAT	1 cut(s)	154
Cac8I	GCNNGC	1 cut(s)	203
CaiI	CAGNNNCTG	1 cut(s)	533
CfoI	GCGC	2 cut(s)	196, 556
Cfr10I	RCCGGY	1 cut(s)	917
Cfr13I	GGNCC	2 cut(s)	103, 537
ClaI	ATCGAT	1 cut(s)	154
CseI	GACGC	2 cut(s)	20, 411
Csp6I	GTAC	2 cut(s)	547, 562
CspAI	ACCGGT	1 cut(s)	917
CviAII	CATG	4 cut(s)	330, 515, 550, 601
CviQI	GTAC	2 cut(s)	547, 562
DdeI	CTNAG	4 cut(s)	253, 353, 445, 786
DinI	GGCGCC	1 cut(s)	555
DpnI	GATC	5 cut(s)	95, 153, 696, 734, 800
DpnII	GATC	5 cut(s)	93, 151, 694, 732, 798
DraIII	CACNNNGTG	1 cut(s)	651
DriI	GACNNNNNGTC	1 cut(s)	125
EaeI	YGGCCR	2 cut(s)	24, 39
Eam1105I	GACNNNNNGTC	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	160
Eco147I	AGGCCT	2 cut(s)	245, 838
Eco31I	GGTCTC	2 cut(s)	377, 623
Eco47I	GGWCC	1 cut(s)	537
Eco47III	AGCGCT	1 cut(s)	195
Eco57I	CTGAAG	1 cut(s)	204
Eco91I	GGTNACC	1 cut(s)	290
EcoO65I	GGTNACC	1 cut(s)	290
EcoRI	GAATTC	1 cut(s)	173
EcoRII	CCWGG	2 cut(s)	21, 908
EcoT14I	CCWWGG	1 cut(s)	160
EgeI	GGCGCC	1 cut(s)	555
EheI	GGCGCC	1 cut(s)	555
ErhI	CCWWGG	1 cut(s)	160
FaeI	CATG	4 cut(s)	333, 518, 553, 604
FalI	AAGNNNNNCTT	4 cut(s)	279, 311, 307, 339
FatI	CATG	4 cut(s)	329, 514, 549, 600
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	1 cut(s)	88
Fsp4HI	GCNGC	1 cut(s)	88
FspBI	CTAG	3 cut(s)	197, 426, 483
GlaI	GCGC	2 cut(s)	195, 555
GluI	GCNGC	1 cut(s)	88
GsaI	CCCAGC	1 cut(s)	537
GsuI	CTGGAG	1 cut(s)	892
HaeII	RGCGCY	2 cut(s)	197, 557
HaeIII	GGCC	7 cut(s)	26, 41, 90, 104, 245, 784, 838
HapII	CCGG	4 cut(s)	178, 249, 557, 918
HgaI	GACGC	2 cut(s)	20, 411
HhaI	GCGC	2 cut(s)	196, 556
Hin1I	GRCGYC	1 cut(s)	554
Hin1II	CATG	4 cut(s)	333, 518, 553, 604
Hin6I	GCGC	2 cut(s)	194, 554
HinP1I	GCGC	2 cut(s)	194, 554
HincII	GTYRAC	2 cut(s)	9, 522
HindII	GTYRAC	2 cut(s)	9, 522
HindIII	AAGCTT	2 cut(s)	203, 227
HinfI	GANTC	4 cut(s)	120, 156, 349, 443
HpaII	CCGG	4 cut(s)	178, 249, 557, 918
HphI	GGTGA	2 cut(s)	115, 601
Hpy166II	GTNNAC	3 cut(s)	9, 442, 522
Hpy188I	TCNGA	2 cut(s)	448, 798
Hpy188III	TCNNGA	6 cut(s)	136, 170, 299, 311, 426, 827
Hpy8I	GTNNAC	3 cut(s)	9, 442, 522
Hpy99I	CGWCG	4 cut(s)	10, 36, 131, 773
HpyAV	CCTTC	1 cut(s)	305
HpyCH4III	ACNGT	4 cut(s)	127, 546, 634, 810
HpyCH4IV	ACGT	2 cut(s)	304, 669
HpyCH4V	TGCA	1 cut(s)	527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	202, 759, 899
HpyF3I	CTNAG	4 cut(s)	253, 353, 445, 786
HpySE526I	ACGT	2 cut(s)	304, 669
Hsp92I	GRCGYC	1 cut(s)	554
Hsp92II	CATG	4 cut(s)	333, 518, 553, 604
HspAI	GCGC	2 cut(s)	194, 554
KasI	GGCGCC	1 cut(s)	553
Kzo9I	GATC	5 cut(s)	93, 151, 694, 732, 798
LmnI	GCTCC	4 cut(s)	84, 573, 898, 912
LweI	GCATC	1 cut(s)	763
MaeI	CTAG	3 cut(s)	197, 426, 483
MaeII	ACGT	2 cut(s)	304, 669
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	5 cut(s)	95, 153, 696, 734, 800
MbiI	CCGCTC	1 cut(s)	87
MboI	GATC	5 cut(s)	93, 151, 694, 732, 798
MboII	GAAGA	2 cut(s)	299, 842
MhlI	GDGCHC	2 cut(s)	578, 917
MlsI	TGGCCA	1 cut(s)	26
MluCI	AATT	4 cut(s)	69, 173, 469, 873
MluNI	TGGCCA	1 cut(s)	26
Mly113I	GGCGCC	1 cut(s)	554
MlyI	GAGTC	2 cut(s)	114, 437
MmeI	TCCRAC	2 cut(s)	372, 705
MnlI	CCTC	8 cut(s)	75, 256, 350, 468, 595, 844, 891, 916
Mox20I	TGGCCA	1 cut(s)	26
MroXI	GAANNNNTTC	1 cut(s)	306
MscI	TGGCCA	1 cut(s)	26
MseI	TTAA	4 cut(s)	225, 345, 468, 922
MslI	CAYNNNNRTG	1 cut(s)	620
Msp20I	TGGCCA	1 cut(s)	26
MspI	CCGG	4 cut(s)	178, 249, 557, 918
MspR9I	CCNGG	3 cut(s)	23, 179, 910
MvaI	CCWGG	2 cut(s)	23, 910
MwoI	GCNNNNNNNGC	3 cut(s)	202, 759, 899
NarI	GGCGCC	1 cut(s)	554
NciI	CCSGG	1 cut(s)	179
NdeII	GATC	5 cut(s)	93, 151, 694, 732, 798
NlaIII	CATG	4 cut(s)	333, 518, 553, 604
NlaIV	GGNNCC	2 cut(s)	538, 555
NspI	RCATGY	1 cut(s)	604
PceI	AGGCCT	2 cut(s)	245, 838
PciI	ACATGT	1 cut(s)	600
PdmI	GAANNNNTTC	1 cut(s)	306
PfeI	GAWTC	2 cut(s)	156, 349
PfoI	TCCNGGA	1 cut(s)	908
PinAI	ACCGGT	1 cut(s)	917
PkrI	GCNGC	1 cut(s)	89
Ple19I	CGATCG	1 cut(s)	154
PleI	GAGTC	2 cut(s)	114, 437
PluTI	GGCGCC	1 cut(s)	557
PpsI	GAGTC	2 cut(s)	114, 437
PscI	ACATGT	1 cut(s)	600
PshAI	GACNNNNGTC	1 cut(s)	498
PshBI	ATTAAT	1 cut(s)	468
Psp1406I	AACGTT	1 cut(s)	669
Psp6I	CCWGG	2 cut(s)	21, 908
PspEI	GGTNACC	1 cut(s)	290
PspFI	CCCAGC	1 cut(s)	533
PspGI	CCWGG	2 cut(s)	21, 908
PspN4I	GGNNCC	2 cut(s)	538, 555
PspPI	GGNCC	2 cut(s)	103, 537
PstI	CTGCAG	1 cut(s)	529
PstNI	CAGNNNCTG	1 cut(s)	533
PvuI	CGATCG	1 cut(s)	154
RsaI	GTAC	2 cut(s)	548, 563
RsaNI	GTAC	2 cut(s)	547, 562
RseI	CAYNNNNRTG	1 cut(s)	620
SalI	GTCGAC	1 cut(s)	7
SaqAI	TTAA	4 cut(s)	225, 345, 468, 922
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	5 cut(s)	93, 151, 694, 732, 798
Sau96I	GGNCC	2 cut(s)	103, 537
SchI	GAGTC	2 cut(s)	114, 437
ScrFI	CCNGG	3 cut(s)	23, 179, 910
SduI	GDGCHC	2 cut(s)	578, 917
SfaNI	GCATC	1 cut(s)	763
SfcI	CTRYAG	2 cut(s)	57, 525
SfoI	GGCGCC	1 cut(s)	555
SinI	GGWCC	1 cut(s)	537
SmiMI	CAYNNNNRTG	1 cut(s)	620
Sse9I	AATT	4 cut(s)	69, 173, 469, 873
SseBI	AGGCCT	2 cut(s)	245, 838
SsiI	CCGC	1 cut(s)	87
SspDI	GGCGCC	1 cut(s)	553
SspMI	CTAG	3 cut(s)	197, 426, 483
StuI	AGGCCT	2 cut(s)	245, 838
StyD4I	CCNGG	3 cut(s)	21, 177, 908
StyI	CCWWGG	1 cut(s)	160
TaaI	ACNGT	4 cut(s)	127, 546, 634, 810
TaiI	ACGT	2 cut(s)	307, 672
TaqI	TCGA	4 cut(s)	8, 154, 208, 771
TasI	AATT	4 cut(s)	69, 173, 469, 873
TatI	WGTACW	1 cut(s)	561
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	2 cut(s)	156, 349
Tru1I	TTAA	4 cut(s)	225, 345, 468, 922
Tru9I	TTAA	4 cut(s)	225, 345, 468, 922
TspDTI	ATGAA	3 cut(s)	318, 398, 860
VpaK11BI	GGWCC	1 cut(s)	537
VspI	ATTAAT	1 cut(s)	468
XapI	RAATTY	2 cut(s)	173, 873
XbaI	TCTAGA	1 cut(s)	425
XceI	RCATGY	1 cut(s)	604
XcmI	CCANNNNNNNNNTGG	2 cut(s)	113, 547
XmiI	GTMKAC	1 cut(s)	8
XmnI	GAANNNNTTC	1 cut(s)	306
XspI	CTAG	3 cut(s)	197, 426, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.