Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0021439

Physical Location & Seq

Genomic Coordinates Reverse (-)

12551835 .. 12552749

Gene Structure 915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG129300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGTCATCGACCCAGTTCTCCCTGGCCAAGCTCCGCGAGGCCACCAACAACTTCTCTACGGATAATGTCATTGGAACTGGGAGGAGCGGCCTGATCTACAAGGCCCATCTCTCCAATGGACTCACCGTCGCCATCAAGAACTACGATCCCAATCGATTCCAAGGCTTTCGGGAATTCCGGGCTGAAGCCGAAGCGCTAGGCAAGCTTCGACACCCAAATATCGTTAAGCTTTTGAGTTATCAAGCCTCCGGCTCAGTTATGCTTCTTGTTTATGAGTATGTAGAGAGAGGTAACCTTCACAAGCGTCTTCGTGAAAGTTGCTCTTTTTCATGGTTTGACAAGTTTAAGATTCTTAGAGGTGTAGCCAATGGTCTCGCTTATTTGCATGGGTTGGAAAACCCTGTCATTCATAGAGATATTGCGTCTAGAAATGTGCTGGTGGACTCAGGCTATGAGCCTCGTATTATTAATTTTGGGCTTTCTAGGACTATTGACAAGTGTCATTCGCTTTCTCATGTGTCAACTGCAGTTGCTGGGTCCGTACCATACATGGCGCCGGACTACCGGAGTGGGAGCACCAAAGCCACGGTGAAAGGCGACGTGTATAGTTTTGGCATTTTGATGATGGAGACTGTATTAGGACCCACAAGGTGTAGTAGATGTTTCAAGCTTTCAGCTCAAAACAGAGATTTTGATCTTGTAGAATGGGTTAGGGGTATAGAGCTGGACAAGATCATAAGCGACTTTTCTGGCTATTCTGGCTATTTCGTCGATGCTCTATGGCCTGAGTATATTCGGATCGCCTTATTGTGTGCTAATGATAATCCAGAAGACAGGCCTGTGATGAACGAGGTTGTTCAAATGCTAAATCAAACTCTACCTCATACCCCTGCTTCCTCCAGGAGCACTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0023052 GO:0038023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

304

Amino Acids

34.02

Weight (kDa)

8.88

Isoelectric Point (pI)

26.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	19 - 287	4e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	20 - 289	5.1e-40	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021439)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0017751
rosa_laevigata	RLG00000032311
rosa_rugosa	Rorug05G0038300
rosa_samantha	Rh5BG129300 Rh5CG141700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	553
AccBSI	CCGCTC	1 cut(s)	87
AccII	CGCG	1 cut(s)	36
AciI	CCGC	2 cut(s)	34, 87
AclWI	GGATC	2 cut(s)	140, 806
AcoI	YGGCCR	1 cut(s)	24
AcsI	RAATTY	1 cut(s)	173
AcuI	CTGAAG	1 cut(s)	204
AcyI	GRCGYC	1 cut(s)	554
AdeI	CACNNNGTG	1 cut(s)	651
AfaI	GTAC	1 cut(s)	543
AfeI	AGCGCT	1 cut(s)	195
AflIII	ACRYGT	1 cut(s)	600
AgsI	TTSAA	2 cut(s)	667, 860
AhdI	GACNNNNNGTC	1 cut(s)	125
AjiI	CACGTC	1 cut(s)	601
AjnI	CCWGG	2 cut(s)	21, 899
AluBI	AGCT	6 cut(s)	31, 205, 229, 670, 677, 724
AluI	AGCT	6 cut(s)	31, 205, 229, 670, 677, 724
Alw21I	GWGCWC	2 cut(s)	578, 908
Alw26I	GTCTC	2 cut(s)	377, 623
AlwI	GGATC	2 cut(s)	140, 806
AlwNI	CAGNNNCTG	1 cut(s)	533
Aor51HI	AGCGCT	1 cut(s)	195
AoxI	GGCC	6 cut(s)	24, 39, 88, 102, 782, 836
ApoI	RAATTY	1 cut(s)	173
AseI	ATTAAT	1 cut(s)	468
AspLEI	GCGC	2 cut(s)	196, 556
AspS9I	GGNCC	3 cut(s)	103, 537, 641
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	2 cut(s)	115, 601
AvaII	GGWCC	2 cut(s)	537, 641
BalI	TGGCCA	1 cut(s)	26
BanI	GGYRCC	1 cut(s)	553
BbsI	GAAGAC	2 cut(s)	299, 837
Bbv12I	GWGCWC	2 cut(s)	578, 908
BccI	CCATC	3 cut(s)	114, 140, 619
BciT130I	CCWGG	2 cut(s)	23, 901
BcnI	CCSGG	1 cut(s)	179
BcoDI	GTCTC	2 cut(s)	377, 623
BfaI	CTAG	3 cut(s)	197, 426, 483
BfmI	CTRYAG	1 cut(s)	525
BfoI	RGCGCY	2 cut(s)	197, 557
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
Bme1390I	CCNGG	3 cut(s)	23, 179, 901
Bme18I	GGWCC	2 cut(s)	537, 641
BmeRI	GACNNNNNGTC	1 cut(s)	125
BmgBI	CACGTC	1 cut(s)	601
BmgT120I	GGNCC	3 cut(s)	103, 537, 641
BmiI	GGNNCC	3 cut(s)	538, 555, 643
BmrFI	CCNGG	3 cut(s)	23, 179, 901
BmrI	ACTGGG	2 cut(s)	7, 87
BmsI	GCATC	1 cut(s)	763
BmuI	ACTGGG	2 cut(s)	7, 87
BoxI	GACNNNNGTC	1 cut(s)	498
BpiI	GAAGAC	2 cut(s)	299, 837
BpmI	CTGGAG	1 cut(s)	883
BpuMI	CCSGG	1 cut(s)	179
Bsa29I	ATCGAT	1 cut(s)	154
BsaBI	GATNNNNATC	2 cut(s)	150, 693
BsaHI	GRCGYC	1 cut(s)	554
BsaI	GGTCTC	1 cut(s)	377
BsaJI	CCNNGG	3 cut(s)	21, 160, 585
BsaWI	WCCGGW	1 cut(s)	564
BsaXI	ACNNNNNCTCC	1 cut(s)	895
Bse1I	ACTGG	3 cut(s)	13, 82, 913
Bse8I	GATNNNNATC	2 cut(s)	150, 693
BseBI	CCWGG	2 cut(s)	23, 901
BseCI	ATCGAT	1 cut(s)	154
BseDI	CCNNGG	3 cut(s)	21, 160, 585
BseJI	GATNNNNATC	2 cut(s)	150, 693
BseMII	CTCAG	3 cut(s)	267, 459, 777
BseNI	ACTGG	3 cut(s)	13, 82, 913
BseRI	GAGGAG	1 cut(s)	97
BseYI	CCCAGC	1 cut(s)	533
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	6 cut(s)	26, 41, 90, 104, 784, 838
BshNI	GGYRCC	1 cut(s)	553
BshVI	ATCGAT	1 cut(s)	154
BsiHKAI	GWGCWC	2 cut(s)	578, 908
BsiSI	CCGG	4 cut(s)	178, 249, 557, 565
BsmAI	GTCTC	2 cut(s)	377, 623
BsnI	GGCC	6 cut(s)	26, 41, 90, 104, 784, 838
Bso31I	GGTCTC	1 cut(s)	377
Bsp1286I	GDGCHC	2 cut(s)	578, 908
Bsp143I	GATC	5 cut(s)	93, 145, 694, 732, 798
BspACI	CCGC	2 cut(s)	34, 87
BspANI	GGCC	6 cut(s)	26, 41, 90, 104, 784, 838
BspCNI	CTCAG	3 cut(s)	266, 458, 778
BspDI	ATCGAT	1 cut(s)	154
BspFNI	CGCG	1 cut(s)	36
BspLI	GGNNCC	3 cut(s)	538, 555, 643
BspMAI	CTGCAG	1 cut(s)	529
BspPI	GGATC	2 cut(s)	140, 806
BspT107I	GGYRCC	1 cut(s)	553
BspTNI	GGTCTC	1 cut(s)	377
BsrBI	CCGCTC	1 cut(s)	87
BsrI	ACTGG	3 cut(s)	13, 82, 913
BssECI	CCNNGG	3 cut(s)	21, 160, 585
BssMI	GATC	5 cut(s)	93, 145, 694, 732, 798
BssNI	GRCGYC	1 cut(s)	554
BssT1I	CCWWGG	1 cut(s)	160
Bst2UI	CCWGG	2 cut(s)	23, 901
Bst4CI	ACNGT	3 cut(s)	127, 589, 634
BstACI	GRCGYC	1 cut(s)	554
BstC8I	GCNNGC	1 cut(s)	203
BstDEI	CTNAG	4 cut(s)	253, 353, 445, 786
BstDSI	CCRYGG	1 cut(s)	585
BstEII	GGTNACC	1 cut(s)	290
BstFNI	CGCG	1 cut(s)	36
BstH2I	RGCGCY	2 cut(s)	197, 557
BstHHI	GCGC	2 cut(s)	196, 556
BstKTI	GATC	5 cut(s)	96, 148, 697, 735, 801
BstMAI	GTCTC	2 cut(s)	377, 623
BstMBI	GATC	5 cut(s)	93, 145, 694, 732, 798
BstMWI	GCNNNNNNNGC	2 cut(s)	202, 759
BstNI	CCWGG	2 cut(s)	23, 901
BstPAI	GACNNNNGTC	1 cut(s)	498
BstPI	GGTNACC	1 cut(s)	290
BstSCI	CCNGG	3 cut(s)	21, 177, 899
BstSFI	CTRYAG	1 cut(s)	525
BstUI	CGCG	1 cut(s)	36
BstV2I	GAAGAC	2 cut(s)	299, 837
Bsu15I	ATCGAT	1 cut(s)	154
BsuRI	GGCC	6 cut(s)	26, 41, 90, 104, 784, 838
BsuTUI	ATCGAT	1 cut(s)	154
BtgI	CCRYGG	1 cut(s)	585
BtrI	CACGTC	1 cut(s)	601
BtsIMutI	CAGTG	1 cut(s)	906
Cac8I	GCNNGC	1 cut(s)	203
CaiI	CAGNNNCTG	1 cut(s)	533
CfoI	GCGC	2 cut(s)	196, 556
Cfr13I	GGNCC	3 cut(s)	103, 537, 641
ClaI	ATCGAT	1 cut(s)	154
CseI	GACGC	2 cut(s)	293, 411
Csp6I	GTAC	1 cut(s)	542
CviAII	CATG	4 cut(s)	330, 386, 515, 550
CviQI	GTAC	1 cut(s)	542
DdeI	CTNAG	4 cut(s)	253, 353, 445, 786
DinI	GGCGCC	1 cut(s)	555
DpnI	GATC	5 cut(s)	95, 147, 696, 734, 800
DpnII	GATC	5 cut(s)	93, 145, 694, 732, 798
DraIII	CACNNNGTG	1 cut(s)	651
DriI	GACNNNNNGTC	1 cut(s)	125
EaeI	YGGCCR	1 cut(s)	24
Eam1105I	GACNNNNNGTC	1 cut(s)	125
Eco130I	CCWWGG	1 cut(s)	160
Eco147I	AGGCCT	1 cut(s)	838
Eco31I	GGTCTC	1 cut(s)	377
Eco47I	GGWCC	2 cut(s)	537, 641
Eco47III	AGCGCT	1 cut(s)	195
Eco57I	CTGAAG	1 cut(s)	204
Eco91I	GGTNACC	1 cut(s)	290
EcoO109I	RGGNCCY	1 cut(s)	641
EcoO65I	GGTNACC	1 cut(s)	290
EcoRI	GAATTC	1 cut(s)	173
EcoRII	CCWGG	2 cut(s)	21, 899
EcoT14I	CCWWGG	1 cut(s)	160
EgeI	GGCGCC	1 cut(s)	555
EheI	GGCGCC	1 cut(s)	555
ErhI	CCWWGG	1 cut(s)	160
FaeI	CATG	4 cut(s)	333, 389, 518, 553
FalI	AAGNNNNNCTT	2 cut(s)	307, 339
FatI	CATG	4 cut(s)	329, 385, 514, 549
Fnu4HI	GCNGC	1 cut(s)	88
Fsp4HI	GCNGC	1 cut(s)	88
FspBI	CTAG	3 cut(s)	197, 426, 483
GlaI	GCGC	2 cut(s)	195, 555
GluI	GCNGC	1 cut(s)	88
GsaI	CCCAGC	1 cut(s)	537
GsuI	CTGGAG	1 cut(s)	883
HaeII	RGCGCY	2 cut(s)	197, 557
HaeIII	GGCC	6 cut(s)	26, 41, 90, 104, 784, 838
HapII	CCGG	4 cut(s)	178, 249, 557, 565
HgaI	GACGC	2 cut(s)	293, 411
HhaI	GCGC	2 cut(s)	196, 556
Hin1I	GRCGYC	1 cut(s)	554
Hin1II	CATG	4 cut(s)	333, 389, 518, 553
Hin6I	GCGC	2 cut(s)	194, 554
HinP1I	GCGC	2 cut(s)	194, 554
HincII	GTYRAC	1 cut(s)	522
HindII	GTYRAC	1 cut(s)	522
HindIII	AAGCTT	3 cut(s)	203, 227, 668
HinfI	GANTC	4 cut(s)	120, 156, 349, 443
HpaII	CCGG	4 cut(s)	178, 249, 557, 565
HphI	GGTGA	2 cut(s)	115, 601
Hpy166II	GTNNAC	2 cut(s)	442, 522
Hpy188I	TCNGA	1 cut(s)	798
Hpy188III	TCNNGA	5 cut(s)	136, 170, 311, 426, 827
Hpy8I	GTNNAC	2 cut(s)	442, 522
Hpy99I	CGWCG	3 cut(s)	131, 602, 773
HpyAV	CCTTC	1 cut(s)	305
HpyCH4III	ACNGT	3 cut(s)	127, 589, 634
HpyCH4IV	ACGT	1 cut(s)	600
HpyCH4V	TGCA	2 cut(s)	385, 527
HpyF10VI	GCNNNNNNNGC	2 cut(s)	202, 759
HpyF3I	CTNAG	4 cut(s)	253, 353, 445, 786
HpySE526I	ACGT	1 cut(s)	600
Hsp92I	GRCGYC	1 cut(s)	554
Hsp92II	CATG	4 cut(s)	333, 389, 518, 553
HspAI	GCGC	2 cut(s)	194, 554
KasI	GGCGCC	1 cut(s)	553
Kzo9I	GATC	5 cut(s)	93, 145, 694, 732, 798
LmnI	GCTCC	4 cut(s)	36, 84, 573, 903
LweI	GCATC	1 cut(s)	763
MaeI	CTAG	3 cut(s)	197, 426, 483
MaeII	ACGT	1 cut(s)	600
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	5 cut(s)	95, 147, 696, 734, 800
MbiI	CCGCTC	1 cut(s)	87
MboI	GATC	5 cut(s)	93, 145, 694, 732, 798
MboII	GAAGA	2 cut(s)	299, 842
MhlI	GDGCHC	2 cut(s)	578, 908
MlsI	TGGCCA	1 cut(s)	26
MluCI	AATT	2 cut(s)	173, 469
MluNI	TGGCCA	1 cut(s)	26
Mly113I	GGCGCC	1 cut(s)	554
MlyI	GAGTC	2 cut(s)	114, 437
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	9 cut(s)	31, 75, 256, 281, 350, 468, 844, 891, 907
Mox20I	TGGCCA	1 cut(s)	26
MscI	TGGCCA	1 cut(s)	26
MseI	TTAA	4 cut(s)	225, 345, 468, 913
MslI	CAYNNNNRTG	1 cut(s)	620
Msp20I	TGGCCA	1 cut(s)	26
MspI	CCGG	4 cut(s)	178, 249, 557, 565
MspR9I	CCNGG	3 cut(s)	23, 179, 901
MvaI	CCWGG	2 cut(s)	23, 901
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	2 cut(s)	202, 759
NarI	GGCGCC	1 cut(s)	554
NciI	CCSGG	1 cut(s)	179
NdeII	GATC	5 cut(s)	93, 145, 694, 732, 798
NlaIII	CATG	4 cut(s)	333, 389, 518, 553
NlaIV	GGNNCC	3 cut(s)	538, 555, 643
PceI	AGGCCT	1 cut(s)	838
PfeI	GAWTC	2 cut(s)	156, 349
PfoI	TCCNGGA	1 cut(s)	899
PkrI	GCNGC	1 cut(s)	89
PleI	GAGTC	2 cut(s)	114, 437
PluTI	GGCGCC	1 cut(s)	557
PpsI	GAGTC	2 cut(s)	114, 437
PpuMI	RGGWCCY	1 cut(s)	641
PshAI	GACNNNNGTC	1 cut(s)	498
PshBI	ATTAAT	1 cut(s)	468
Psp5II	RGGWCCY	1 cut(s)	641
Psp6I	CCWGG	2 cut(s)	21, 899
PspEI	GGTNACC	1 cut(s)	290
PspFI	CCCAGC	1 cut(s)	533
PspGI	CCWGG	2 cut(s)	21, 899
PspN4I	GGNNCC	3 cut(s)	538, 555, 643
PspPI	GGNCC	3 cut(s)	103, 537, 641
PspPPI	RGGWCCY	1 cut(s)	641
PstI	CTGCAG	1 cut(s)	529
PstNI	CAGNNNCTG	1 cut(s)	533
RsaI	GTAC	1 cut(s)	543
RsaNI	GTAC	1 cut(s)	542
RseI	CAYNNNNRTG	1 cut(s)	620
SaqAI	TTAA	4 cut(s)	225, 345, 468, 913
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	5 cut(s)	93, 145, 694, 732, 798
Sau96I	GGNCC	3 cut(s)	103, 537, 641
SchI	GAGTC	2 cut(s)	114, 437
ScrFI	CCNGG	3 cut(s)	23, 179, 901
SduI	GDGCHC	2 cut(s)	578, 908
SfaNI	GCATC	1 cut(s)	763
SfcI	CTRYAG	1 cut(s)	525
SfoI	GGCGCC	1 cut(s)	555
SinI	GGWCC	2 cut(s)	537, 641
SmiMI	CAYNNNNRTG	1 cut(s)	620
Sse9I	AATT	2 cut(s)	173, 469
SseBI	AGGCCT	1 cut(s)	838
SsiI	CCGC	2 cut(s)	34, 87
SspDI	GGCGCC	1 cut(s)	553
SspMI	CTAG	3 cut(s)	197, 426, 483
StuI	AGGCCT	1 cut(s)	838
StyD4I	CCNGG	3 cut(s)	21, 177, 899
StyI	CCWWGG	1 cut(s)	160
TaaI	ACNGT	3 cut(s)	127, 589, 634
TaiI	ACGT	1 cut(s)	603
TaqI	TCGA	4 cut(s)	8, 154, 208, 771
TasI	AATT	2 cut(s)	173, 469
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	2 cut(s)	156, 349
Tru1I	TTAA	4 cut(s)	225, 345, 468, 913
Tru9I	TTAA	4 cut(s)	225, 345, 468, 913
TscAI	CASTG	1 cut(s)	913
TspDTI	ATGAA	3 cut(s)	318, 398, 860
TspGWI	ACGGA	2 cut(s)	74, 529
TspRI	CASTG	1 cut(s)	913
VpaK11BI	GGWCC	2 cut(s)	537, 641
VspI	ATTAAT	1 cut(s)	468
XapI	RAATTY	1 cut(s)	173
XbaI	TCTAGA	1 cut(s)	425
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113
XspI	CTAG	3 cut(s)	197, 426, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.