RLG00000032370

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0018815
Physical Location & Seq
Reverse (-)
14087959 .. 14088668
710 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032370

Sequence Viewer

Length: 477 bp
ATGGGGTACTTGGGTCTCATTGTCATGTTGAGCTTAATTTTAGCTTCCGATATTCTTCATGTTCAAGCACGTTGGTTACTGGCCGAGGCACCAAAACCGACCCAAGAGGAAAATGGAAGAGCTGCTGAAAATGGAAAGGTGACGATGAAGGAGCAGTCAACAAAGGCAAAGATGGAGTTGGGTGAGATGAAGAATGTGCCACCTATTCCTGAGATTCCATTAACACCACAAACTTCTGGAAACCTTCCATTTACACCCTCATTACCAATTCCCCAAATACCATATACACCACAAATTCCAGGCAATATTCCATTTCTTCCTCCCCCATTTCCAATTCCAAAAATCCCATTTACACCTCCACTTGAGATCCCTAATTTTCCACTACCTCCATTTCCATTCCCATCAATTCCTAACTTCCCACCATTTCCTCCTTTCAACATCCCTAACAATCCCTTCTTTGCTCCTCCTCCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.32

Weight (kDa)

5.77

Isoelectric Point (pI)

68.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018815)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11531
malus_domestica MD10G1240900.v1.1
prunus_persica Prupe.4G102700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0018481
rosa_laevigata RLG00000032370
rosa_roxburghii Rroxscaffold_1G00059250
rosa_rugosa Rorug05G0044500
rosa_samantha Rh5CG146700 Rh5DG135800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 88
AclWI GGATC 1 cut(s) 361
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 1 cut(s) 294
AfaI GTAC 1 cut(s) 8
AgsI TTSAA 2 cut(s) 65, 436
AjnI CCWGG 1 cut(s) 298
AluBI AGCT 3 cut(s) 33, 44, 122
AluI AGCT 3 cut(s) 33, 44, 122
Alw26I GTCTC 1 cut(s) 20
AlwI GGATC 1 cut(s) 361
AoxI GGCC 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 122
ApoI RAATTY 1 cut(s) 294
AsuHPI GGTGA 2 cut(s) 151, 194
BaeI ACNNNNGTAYC 1 cut(s) 31
BanI GGYRCC 1 cut(s) 88
BbvI GCAGC 1 cut(s) 109
BccI CCATC 2 cut(s) 166, 409
BciT130I CCWGG 1 cut(s) 300
BcoDI GTCTC 1 cut(s) 20
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
Bme1390I CCNGG 1 cut(s) 300
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 383
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 84
Bse1I ACTGG 1 cut(s) 84
BseBI CCWGG 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 1 cut(s) 438
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 84
BseRI GAGGAG 2 cut(s) 453, 456
BseXI GCAGC 1 cut(s) 109
BshFI GGCC 1 cut(s) 83
BshNI GGYRCC 1 cut(s) 88
BsmAI GTCTC 1 cut(s) 20
BsnI GGCC 1 cut(s) 83
Bso31I GGTCTC 1 cut(s) 20
Bsp143I GATC 1 cut(s) 366
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 1 cut(s) 202
BspLI GGNNCC 1 cut(s) 90
BspPI GGATC 1 cut(s) 361
BspQI GCTCTTC 1 cut(s) 112
BspT107I GGYRCC 1 cut(s) 88
BspTNI GGTCTC 1 cut(s) 20
BsrI ACTGG 1 cut(s) 84
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 1 cut(s) 366
Bst2UI CCWGG 1 cut(s) 300
Bst6I CTCTTC 1 cut(s) 112
BstDEI CTNAG 1 cut(s) 210
BstF5I GGATG 1 cut(s) 438
BstKTI GATC 1 cut(s) 369
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 1 cut(s) 366
BstNI CCWGG 1 cut(s) 300
BstSCI CCNGG 1 cut(s) 298
BstV1I GCAGC 1 cut(s) 109
BstX2I RGATCY 1 cut(s) 366
BstYI RGATCY 1 cut(s) 366
BsuRI GGCC 1 cut(s) 83
BtsCI GGATG 1 cut(s) 438
Csp6I GTAC 1 cut(s) 7
CviAII CATG 2 cut(s) 25, 59
CviJI RGCY 4 cut(s) 33, 44, 83, 122
CviKI_1 RGCY 4 cut(s) 33, 44, 83, 122
CviQI GTAC 1 cut(s) 7
DdeI CTNAG 1 cut(s) 210
DpnI GATC 1 cut(s) 368
DpnII GATC 1 cut(s) 366
EaeI YGGCCR 1 cut(s) 81
Eam1104I CTCTTC 1 cut(s) 112
EarI CTCTTC 1 cut(s) 112
Eco31I GGTCTC 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 298
FaeI CATG 2 cut(s) 28, 62
FaiI YATR 5 cut(s) 26, 60, 283, 285, 475
FatI CATG 2 cut(s) 24, 58
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 1 cut(s) 425
Fsp4HI GCNGC 1 cut(s) 123
GluI GCNGC 1 cut(s) 123
HaeIII GGCC 1 cut(s) 83
Hin1II CATG 2 cut(s) 28, 62
HincII GTYRAC 1 cut(s) 159
HindII GTYRAC 1 cut(s) 159
HinfI GANTC 1 cut(s) 214
HphI GGTGA 2 cut(s) 151, 194
Hpy166II GTNNAC 1 cut(s) 159
Hpy188I TCNGA 1 cut(s) 49
Hpy188III TCNNGA 2 cut(s) 209, 237
Hpy8I GTNNAC 1 cut(s) 159
HpyAV CCTTC 3 cut(s) 142, 254, 463
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 1 cut(s) 473
HpyF3I CTNAG 1 cut(s) 210
HpySE526I ACGT 1 cut(s) 70
Hsp92II CATG 2 cut(s) 28, 62
Kzo9I GATC 1 cut(s) 366
LguI GCTCTTC 1 cut(s) 112
LmnI GCTCC 2 cut(s) 151, 466
LpnPI CCDG 5 cut(s) 65, 222, 222, 285, 312
Lsp1109I GCAGC 1 cut(s) 109
MaeII ACGT 1 cut(s) 70
MaeIII GTNAC 2 cut(s) 75, 139
MalI GATC 1 cut(s) 368
MboI GATC 1 cut(s) 366
MboII GAAGA 4 cut(s) 47, 129, 202, 308
MflI RGATCY 1 cut(s) 366
MluCI AATT 6 cut(s) 36, 267, 294, 333, 373, 405
MnlI CCTC 9 cut(s) 79, 100, 268, 330, 366, 396, 438, 474, 477
MseI TTAA 2 cut(s) 35, 221
MslI CAYNNNNRTG 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 300
MvaI CCWGG 1 cut(s) 300
NdeII GATC 1 cut(s) 366
NlaIII CATG 2 cut(s) 28, 62
NlaIV GGNNCC 1 cut(s) 90
NmeAIII GCCGAG 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 139
PciSI GCTCTTC 1 cut(s) 112
PfeI GAWTC 1 cut(s) 214
PkrI GCNGC 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 298
PspGI CCWGG 1 cut(s) 298
PspN4I GGNNCC 1 cut(s) 90
PsuI RGATCY 1 cut(s) 366
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 23
SapI GCTCTTC 1 cut(s) 112
SaqAI TTAA 2 cut(s) 35, 221
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 1 cut(s) 366
ScrFI CCNGG 1 cut(s) 300
SetI ASST 9 cut(s) 35, 46, 73, 124, 141, 205, 246, 358, 388
SmiMI CAYNNNNRTG 1 cut(s) 23
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 6 cut(s) 36, 267, 294, 333, 373, 405
SspI AATATT 1 cut(s) 307
StyD4I CCNGG 1 cut(s) 298
TaiI ACGT 1 cut(s) 73
TasI AATT 6 cut(s) 36, 267, 294, 333, 373, 405
TfiI GAWTC 1 cut(s) 214
Tru1I TTAA 2 cut(s) 35, 221
Tru9I TTAA 2 cut(s) 35, 221
TseFI GTSAC 1 cut(s) 139
TseI GCWGC 1 cut(s) 122
Tsp45I GTSAC 1 cut(s) 139
TspDTI ATGAA 3 cut(s) 47, 161, 203
XapI RAATTY 1 cut(s) 294
XcmI CCANNNNNNNNNTGG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.