Rorug05G0044500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0018815
Physical Location & Seq
Reverse (-)
3926022 .. 3926694
673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0044500.1

Sequence Viewer

Length: 651 bp
ATGGCTTCATCATATGCAGAGTCATCGAGAAGAGGAGTAAAGAGGAAACGCCAAAACAACTGCAACCGCCGTGATGATTCCTGGGTGTTTGATGTTCACAGTGATCTTGTGGAGGAAATCTTCACTCACCTGCCGATAAAGCAGTGTGTGCAGATAGGGCTGGTGGCCAAGGAGTTTCGGGGAACGTGGCGAAAATGCCGGAATCCCGACTTCGGGAGAGAATTCGCCGCCACCCAACGCTACCGGTTGGCTTACAGTGCCGCCGTGGATCATAAGAAAAGATCAAAACCCTTCGGTTGTGTTTTTGACCCGTCTGGAGTTGAGTTTCTTCTTGAGGAGTGGGTCCAAGAATTGGTCAGGAAAGGAGTCGAGGAGCTCGATCTCGACGTCTTCCAGGCGACGATGCCATTTTGTGTCCCCACCAATGCTAAAGAGGCAACGCTCAAGGAGCTCAAGTTGTCTTATTCGATGATCCGGATGCCGTTTAATCTGAAGGCTCTAGTGTCTTTGACCACCATGGTTCTGAGGCAGGTTGATCTGACAGACCTGATCGTCGAGGCCGTGTTCGAAAATTGTGCTCATCTCGAGACCTTTGACATAGCTGATTGCTATATATGGAGTGAGGAATATGAAGGTGAAGGCGAACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

216

Amino Acids

24.99

Weight (kDa)

5.52

Isoelectric Point (pI)

38.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At1g61320_AtMIF1 PF23622 110 - 204 5e-10 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 111 - 203 2.4e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018815)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11531
malus_domestica MD10G1240900.v1.1
prunus_persica Prupe.4G102700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0018481
rosa_laevigata RLG00000032370
rosa_roxburghii Rroxscaffold_1G00059250
rosa_rugosa Rorug05G0044500
rosa_samantha Rh5CG146700 Rh5DG135800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 138
AasI GACNNNNNNGTC 1 cut(s) 551
AatII GACGTC 1 cut(s) 390
Acc36I ACCTGC 2 cut(s) 138, 520
AccB7I CCANNNNNTGG 1 cut(s) 352
AccIII TCCGGA 1 cut(s) 474
AciI CCGC 3 cut(s) 67, 228, 261
AclWI GGATC 2 cut(s) 276, 466
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 1 cut(s) 221
AcuI CTGAAG 1 cut(s) 512
AcyI GRCGYC 1 cut(s) 387
AfiI CCNNNNNNNGG 3 cut(s) 212, 213, 352
AgeI ACCGGT 1 cut(s) 243
AjnI CCWGG 2 cut(s) 80, 393
AluBI AGCT 3 cut(s) 376, 451, 602
AluI AGCT 3 cut(s) 376, 451, 602
Alw21I GWGCWC 3 cut(s) 378, 453, 580
Alw26I GTCTC 1 cut(s) 581
AlwI GGATC 2 cut(s) 276, 466
Ama87I CYCGRG 1 cut(s) 584
Aor13HI TCCGGA 1 cut(s) 474
AoxI GGCC 2 cut(s) 165, 558
ApoI RAATTY 1 cut(s) 221
AsiGI ACCGGT 1 cut(s) 243
AspS9I GGNCC 1 cut(s) 343
AsuHPI GGTGA 2 cut(s) 119, 647
AsuII TTCGAA 1 cut(s) 567
AvaI CYCGRG 1 cut(s) 584
AvaII GGWCC 1 cut(s) 343
BalI TGGCCA 1 cut(s) 167
BanII GRGCYC 2 cut(s) 378, 453
BbsI GAAGAC 1 cut(s) 382
Bbv12I GWGCWC 3 cut(s) 378, 453, 580
BceAI ACGGC 4 cut(s) 54, 248, 466, 545
BcgI CGANNNNNNTGC 4 cut(s) 6, 40, 557, 591
BciT130I CCWGG 2 cut(s) 82, 395
BcoDI GTCTC 1 cut(s) 581
BfaI CTAG 1 cut(s) 500
BfuAI ACCTGC 2 cut(s) 138, 520
BisI GCNGC 2 cut(s) 228, 261
BlsI GCNGC 2 cut(s) 229, 262
Bme1390I CCNGG 2 cut(s) 82, 395
Bme18I GGWCC 1 cut(s) 343
BmeT110I CYCGRG 1 cut(s) 584
BmgT120I GGNCC 1 cut(s) 343
BmiI GGNNCC 1 cut(s) 344
BmrFI CCNGG 2 cut(s) 82, 395
BmsI GCATC 2 cut(s) 393, 468
BpiI GAAGAC 1 cut(s) 382
BpmI CTGGAG 1 cut(s) 336
Bpu14I TTCGAA 1 cut(s) 567
BpuEI CTTGAG 3 cut(s) 353, 428, 437
BsaHI GRCGYC 1 cut(s) 387
BsaI GGTCTC 1 cut(s) 581
BsaJI CCNNGG 4 cut(s) 81, 168, 264, 516
BsaWI WCCGGW 2 cut(s) 243, 474
BsaXI ACNNNNNCTCC 2 cut(s) 440, 470
Bsc4I CCNNNNNNNGG 3 cut(s) 212, 213, 352
Bse118I RCCGGY 1 cut(s) 243
BseAI TCCGGA 1 cut(s) 474
BseBI CCWGG 2 cut(s) 82, 395
BseDI CCNNGG 4 cut(s) 81, 168, 264, 516
BseGI GGATG 1 cut(s) 483
BseLI CCNNNNNNNGG 3 cut(s) 212, 213, 352
BseMII CTCAG 1 cut(s) 515
BseRI GAGGAG 3 cut(s) 48, 350, 386
BsgI GTGCAG 1 cut(s) 170
BshFI GGCC 2 cut(s) 167, 560
BshTI ACCGGT 1 cut(s) 243
BsiHKAI GWGCWC 3 cut(s) 378, 453, 580
BsiHKCI CYCGRG 1 cut(s) 584
BsiSI CCGG 3 cut(s) 199, 244, 475
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 3 cut(s) 212, 213, 352
BsmAI GTCTC 1 cut(s) 581
BsmFI GGGAC 1 cut(s) 401
BsnI GGCC 2 cut(s) 167, 560
Bso31I GGTCTC 1 cut(s) 581
BsoBI CYCGRG 1 cut(s) 584
Bsp119I TTCGAA 1 cut(s) 567
Bsp1286I GDGCHC 3 cut(s) 378, 453, 580
Bsp13I TCCGGA 1 cut(s) 474
Bsp143I GATC 7 cut(s) 103, 268, 281, 379, 471, 535, 549
Bsp19I CCATGG 1 cut(s) 516
BspACI CCGC 3 cut(s) 67, 228, 261
BspANI GGCC 2 cut(s) 167, 560
BspCNI CTCAG 1 cut(s) 516
BspEI TCCGGA 1 cut(s) 474
BspLI GGNNCC 1 cut(s) 344
BspMI ACCTGC 2 cut(s) 138, 520
BspPI GGATC 2 cut(s) 276, 466
BspT104I TTCGAA 1 cut(s) 567
BspTNI GGTCTC 1 cut(s) 581
BsrFI RCCGGY 1 cut(s) 243
BssAI RCCGGY 1 cut(s) 243
BssECI CCNNGG 4 cut(s) 81, 168, 264, 516
BssMI GATC 7 cut(s) 103, 268, 281, 379, 471, 535, 549
BssNI GRCGYC 1 cut(s) 387
BssT1I CCWWGG 2 cut(s) 168, 516
Bst2UI CCWGG 2 cut(s) 82, 395
Bst4CI ACNGT 2 cut(s) 101, 257
Bst6I CTCTTC 1 cut(s) 25
BstACI GRCGYC 1 cut(s) 387
BstAPI GCANNNNNTGC 1 cut(s) 148
BstBI TTCGAA 1 cut(s) 567
BstDEI CTNAG 1 cut(s) 524
BstDSI CCRYGG 2 cut(s) 264, 516
BstF5I GGATG 1 cut(s) 483
BstKTI GATC 7 cut(s) 106, 271, 284, 382, 474, 538, 552
BstMAI GTCTC 1 cut(s) 581
BstMBI GATC 7 cut(s) 103, 268, 281, 379, 471, 535, 549
BstMWI GCNNNNNNNGC 6 cut(s) 139, 148, 157, 257, 434, 448
BstNI CCWGG 2 cut(s) 82, 395
BstSCI CCNGG 2 cut(s) 80, 393
BstV2I GAAGAC 1 cut(s) 382
BsuRI GGCC 2 cut(s) 167, 560
BtgI CCRYGG 2 cut(s) 264, 516
BtsCI GGATG 1 cut(s) 483
BtsI GCAGTG 1 cut(s) 149
BtsIMutI CAGTG 3 cut(s) 106, 149, 262
BveI ACCTGC 2 cut(s) 138, 520
Cfr10I RCCGGY 1 cut(s) 243
Cfr13I GGNCC 1 cut(s) 343
CspAI ACCGGT 1 cut(s) 243
CviAII CATG 1 cut(s) 517
CviJI RGCY 9 cut(s) 5, 160, 167, 251, 376, 451, 497, 560, 602
CviKI_1 RGCY 9 cut(s) 5, 160, 167, 251, 376, 451, 497, 560, 602
DdeI CTNAG 1 cut(s) 524
DpnI GATC 7 cut(s) 105, 270, 283, 381, 473, 537, 551
DpnII GATC 7 cut(s) 103, 268, 281, 379, 471, 535, 549
DrdI GACNNNNNNGTC 1 cut(s) 551
DseDI GACNNNNNNGTC 1 cut(s) 551
EaeI YGGCCR 1 cut(s) 165
Eam1104I CTCTTC 1 cut(s) 25
EarI CTCTTC 1 cut(s) 25
Ecl136II GAGCTC 2 cut(s) 376, 451
Eco130I CCWWGG 2 cut(s) 168, 516
Eco24I GRGCYC 2 cut(s) 378, 453
Eco31I GGTCTC 1 cut(s) 581
Eco47I GGWCC 1 cut(s) 343
Eco53kI GAGCTC 2 cut(s) 376, 451
Eco57I CTGAAG 1 cut(s) 512
Eco88I CYCGRG 1 cut(s) 584
EcoICRI GAGCTC 2 cut(s) 376, 451
EcoRI GAATTC 1 cut(s) 221
EcoRII CCWGG 2 cut(s) 80, 393
EcoT14I CCWWGG 2 cut(s) 168, 516
EcoT38I GRGCYC 2 cut(s) 378, 453
ErhI CCWWGG 2 cut(s) 168, 516
FaeI CATG 1 cut(s) 520
FaiI YATR 9 cut(s) 13, 15, 273, 518, 599, 612, 614, 616, 630
FalI AAGNNNNNCTT 1 cut(s) 630
FaqI GGGAC 1 cut(s) 401
FatI CATG 1 cut(s) 516
FauNDI CATATG 1 cut(s) 13
Fnu4HI GCNGC 2 cut(s) 228, 261
FokI GGATG 1 cut(s) 490
FriOI GRGCYC 2 cut(s) 378, 453
Fsp4HI GCNGC 2 cut(s) 228, 261
FspBI CTAG 1 cut(s) 500
GluI GCNGC 2 cut(s) 228, 261
GsuI CTGGAG 1 cut(s) 336
HaeIII GGCC 2 cut(s) 167, 560
HapII CCGG 3 cut(s) 199, 244, 475
Hin1I GRCGYC 1 cut(s) 387
Hin1II CATG 1 cut(s) 520
HinfI GANTC 4 cut(s) 20, 77, 202, 366
HpaII CCGG 3 cut(s) 199, 244, 475
HphI GGTGA 2 cut(s) 119, 647
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 3 cut(s) 492, 525, 540
Hpy8I GTNNAC 1 cut(s) 97
Hpy99I CGWCG 3 cut(s) 389, 403, 557
HpyAV CCTTC 4 cut(s) 301, 487, 626, 632
HpyCH4III ACNGT 2 cut(s) 101, 257
HpyCH4IV ACGT 2 cut(s) 185, 387
HpyCH4V TGCA 3 cut(s) 17, 63, 151
HpyF10VI GCNNNNNNNGC 6 cut(s) 139, 148, 157, 257, 434, 448
HpyF3I CTNAG 1 cut(s) 524
HpySE526I ACGT 2 cut(s) 185, 387
Hsp92I GRCGYC 1 cut(s) 387
Hsp92II CATG 1 cut(s) 520
Kpn2I TCCGGA 1 cut(s) 474
Kzo9I GATC 7 cut(s) 103, 268, 281, 379, 471, 535, 549
LmnI GCTCC 2 cut(s) 373, 448
LweI GCATC 2 cut(s) 393, 468
MaeI CTAG 1 cut(s) 500
MaeII ACGT 2 cut(s) 185, 387
MalI GATC 7 cut(s) 105, 270, 283, 381, 473, 537, 551
MboI GATC 7 cut(s) 103, 268, 281, 379, 471, 535, 549
MboII GAAGA 4 cut(s) 42, 112, 320, 382
MhlI GDGCHC 3 cut(s) 378, 453, 580
MlsI TGGCCA 1 cut(s) 167
MluCI AATT 3 cut(s) 221, 350, 571
MluNI TGGCCA 1 cut(s) 167
MlyI GAGTC 2 cut(s) 29, 375
MnlI CCTC 9 cut(s) 26, 36, 106, 328, 364, 427, 519, 550, 616
Mox20I TGGCCA 1 cut(s) 167
MroI TCCGGA 1 cut(s) 474
MscI TGGCCA 1 cut(s) 167
MseI TTAA 2 cut(s) 486, 649
Msp20I TGGCCA 1 cut(s) 167
MspI CCGG 3 cut(s) 199, 244, 475
MspR9I CCNGG 2 cut(s) 82, 395
MvaI CCWGG 2 cut(s) 82, 395
MwoI GCNNNNNNNGC 6 cut(s) 139, 148, 157, 257, 434, 448
NcoI CCATGG 1 cut(s) 516
NdeI CATATG 1 cut(s) 13
NdeII GATC 7 cut(s) 103, 268, 281, 379, 471, 535, 549
NlaIII CATG 1 cut(s) 520
NlaIV GGNNCC 1 cut(s) 344
NspV TTCGAA 1 cut(s) 567
PaeR7I CTCGAG 1 cut(s) 584
PaqCI CACCTGC 1 cut(s) 138
PcsI WCGNNNNNNNCGW 3 cut(s) 375, 384, 558
PfeI GAWTC 2 cut(s) 77, 202
PflMI CCANNNNNTGG 1 cut(s) 352
PinAI ACCGGT 1 cut(s) 243
PkrI GCNGC 2 cut(s) 229, 262
PleI GAGTC 2 cut(s) 28, 374
PpsI GAGTC 2 cut(s) 28, 374
Psp124BI GAGCTC 2 cut(s) 378, 453
Psp6I CCWGG 2 cut(s) 80, 393
PspGI CCWGG 2 cut(s) 80, 393
PspN4I GGNNCC 1 cut(s) 344
PspPI GGNCC 1 cut(s) 343
SacI GAGCTC 2 cut(s) 378, 453
SaqAI TTAA 2 cut(s) 486, 649
SatI GCNGC 2 cut(s) 228, 261
Sau3AI GATC 7 cut(s) 103, 268, 281, 379, 471, 535, 549
Sau96I GGNCC 1 cut(s) 343
SchI GAGTC 2 cut(s) 29, 375
ScrFI CCNGG 2 cut(s) 82, 395
SduI GDGCHC 3 cut(s) 378, 453, 580
SfaNI GCATC 2 cut(s) 393, 468
Sfr274I CTCGAG 1 cut(s) 584
SfuI TTCGAA 1 cut(s) 567
SinI GGWCC 1 cut(s) 343
SlaI CTCGAG 1 cut(s) 584
SmlI CTYRAG 4 cut(s) 332, 443, 452, 584
SmoI CTYRAG 4 cut(s) 332, 443, 452, 584
Sse9I AATT 3 cut(s) 221, 350, 571
SsiI CCGC 3 cut(s) 67, 228, 261
SspMI CTAG 1 cut(s) 500
SstI GAGCTC 2 cut(s) 378, 453
StyD4I CCNGG 2 cut(s) 80, 393
StyI CCWWGG 2 cut(s) 168, 516
TaaI ACNGT 2 cut(s) 101, 257
TaiI ACGT 2 cut(s) 188, 390
TaqI TCGA 8 cut(s) 26, 369, 378, 384, 467, 555, 567, 585
TasI AATT 3 cut(s) 221, 350, 571
TauI GCSGC 2 cut(s) 230, 263
TfiI GAWTC 2 cut(s) 77, 202
Tru1I TTAA 2 cut(s) 486, 649
Tru9I TTAA 2 cut(s) 486, 649
TscAI CASTG 3 cut(s) 106, 149, 262
TspDTI ATGAA 1 cut(s) 645
TspRI CASTG 3 cut(s) 106, 149, 262
Van91I CCANNNNNTGG 1 cut(s) 352
VpaK11BI GGWCC 1 cut(s) 343
XapI RAATTY 1 cut(s) 221
XhoI CTCGAG 1 cut(s) 584
XspI CTAG 1 cut(s) 500
ZraI GACGTC 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.