Rh5DG135800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0018815
Physical Location & Seq
Reverse (-)
13595493 .. 13596585
1093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG135800.1

Sequence Viewer

Length: 495 bp
ATGTCTACTTTCAAAATGGGGTACTTGGGTCTCATTGTCATGTTGAGCTTAATTTTCGCCTCCGATATTCTTCATGTTCAAGCACGTTGGTTACCGGCCGAGGCACCAAAACCAACCCAAGATGAAAATGGAAGAGCTGCTGAAAATGGAAAGGTGACGATGAAGGAGCAGTCAACAAAGGCAAAGATGGAGTTGGGTGAGATGAAGAATGTGCCACCTATTCCTGAGATTCCATTAACACCTCAAACTTCTGGAAACCTTCCATTTACACCCCCATTACCAATTCCCCAAATACCATATACACCACAAATTCCAGGCAATATTCCATTTCTTCTTCCCCCATTTCCAATTCCACAAATCCCATTTACACCTCCACTTGAGATCCCTAATTTCCCACCACTACCTCCATTTCCATTCCCATCAATTCCTAACTTCCCACCATTTCCTCCTTTCAACATCCCTAACAATCCCTTCTTTTCTCCTCCTCCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.06

Weight (kDa)

5.75

Isoelectric Point (pI)

72.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018815)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g11531
malus_domestica MD10G1240900.v1.1
prunus_persica Prupe.4G102700_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0018481
rosa_laevigata RLG00000032370
rosa_roxburghii Rroxscaffold_1G00059250
rosa_rugosa Rorug05G0044500
rosa_samantha Rh5CG146700 Rh5DG135800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 103
AccI GTMKAC 1 cut(s) 5
AclWI GGATC 1 cut(s) 376
AcoI YGGCCR 1 cut(s) 96
AcsI RAATTY 1 cut(s) 309
AfaI GTAC 1 cut(s) 23
AgsI TTSAA 3 cut(s) 13, 80, 454
AjnI CCWGG 1 cut(s) 313
AluBI AGCT 2 cut(s) 48, 137
AluI AGCT 2 cut(s) 48, 137
Alw26I GTCTC 1 cut(s) 35
AlwI GGATC 1 cut(s) 376
AoxI GGCC 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 137
ApoI RAATTY 1 cut(s) 309
AsuHPI GGTGA 2 cut(s) 166, 209
BaeI ACNNNNGTAYC 2 cut(s) 13, 46
BanI GGYRCC 1 cut(s) 103
BbvI GCAGC 1 cut(s) 124
BccI CCATC 2 cut(s) 181, 427
BciT130I CCWGG 1 cut(s) 315
BcoDI GTCTC 1 cut(s) 35
BisI GCNGC 1 cut(s) 138
BlsI GCNGC 1 cut(s) 139
Bme1390I CCNGG 1 cut(s) 315
BmiI GGNNCC 1 cut(s) 105
BmrFI CCNGG 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 398
BsaI GGTCTC 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 99
Bse118I RCCGGY 1 cut(s) 94
BseBI CCWGG 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 1 cut(s) 456
BseMII CTCAG 1 cut(s) 216
BseRI GAGGAG 2 cut(s) 471, 474
BseX3I CGGCCG 1 cut(s) 96
BseXI GCAGC 1 cut(s) 124
Bsh1285I CGRYCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 98
BshNI GGYRCC 1 cut(s) 103
BsiEI CGRYCG 1 cut(s) 99
BsiSI CCGG 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 35
BsnI GGCC 1 cut(s) 98
Bso31I GGTCTC 1 cut(s) 35
Bsp143I GATC 1 cut(s) 381
BspANI GGCC 1 cut(s) 98
BspCNI CTCAG 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 105
BspPI GGATC 1 cut(s) 376
BspQI GCTCTTC 1 cut(s) 127
BspT107I GGYRCC 1 cut(s) 103
BspTNI GGTCTC 1 cut(s) 35
BsrFI RCCGGY 1 cut(s) 94
BssAI RCCGGY 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 1 cut(s) 381
Bst2UI CCWGG 1 cut(s) 315
Bst6I CTCTTC 1 cut(s) 127
BstDEI CTNAG 1 cut(s) 225
BstEII GGTNACC 1 cut(s) 90
BstF5I GGATG 1 cut(s) 456
BstKTI GATC 1 cut(s) 384
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 1 cut(s) 381
BstMCI CGRYCG 1 cut(s) 99
BstNI CCWGG 1 cut(s) 315
BstPI GGTNACC 1 cut(s) 90
BstSCI CCNGG 1 cut(s) 313
BstV1I GCAGC 1 cut(s) 124
BstX2I RGATCY 1 cut(s) 381
BstYI RGATCY 1 cut(s) 381
BstZI CGGCCG 1 cut(s) 96
BsuRI GGCC 1 cut(s) 98
BtsCI GGATG 1 cut(s) 456
Cfr10I RCCGGY 1 cut(s) 94
Csp6I GTAC 1 cut(s) 22
CviAII CATG 2 cut(s) 40, 74
CviJI RGCY 3 cut(s) 48, 98, 137
CviKI_1 RGCY 3 cut(s) 48, 98, 137
CviQI GTAC 1 cut(s) 22
DdeI CTNAG 1 cut(s) 225
DpnI GATC 1 cut(s) 383
DpnII GATC 1 cut(s) 381
EaeI YGGCCR 1 cut(s) 96
EagI CGGCCG 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 127
EarI CTCTTC 1 cut(s) 127
EclXI CGGCCG 1 cut(s) 96
Eco31I GGTCTC 1 cut(s) 35
Eco52I CGGCCG 1 cut(s) 96
Eco91I GGTNACC 1 cut(s) 90
EcoO65I GGTNACC 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 313
FaeI CATG 2 cut(s) 43, 77
FaiI YATR 5 cut(s) 41, 75, 298, 300, 493
FatI CATG 2 cut(s) 39, 73
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 138
FokI GGATG 1 cut(s) 443
Fsp4HI GCNGC 1 cut(s) 138
GluI GCNGC 1 cut(s) 138
HaeIII GGCC 1 cut(s) 98
HapII CCGG 1 cut(s) 95
Hin1II CATG 2 cut(s) 43, 77
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HinfI GANTC 1 cut(s) 229
HpaII CCGG 1 cut(s) 95
HphI GGTGA 2 cut(s) 166, 209
Hpy166II GTNNAC 2 cut(s) 6, 174
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 2 cut(s) 224, 252
Hpy8I GTNNAC 2 cut(s) 6, 174
HpyAV CCTTC 3 cut(s) 157, 269, 481
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 1 cut(s) 491
HpyF3I CTNAG 1 cut(s) 225
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 2 cut(s) 43, 77
Kzo9I GATC 1 cut(s) 381
LguI GCTCTTC 1 cut(s) 127
LmnI GCTCC 1 cut(s) 166
LpnPI CCDG 5 cut(s) 108, 237, 237, 300, 327
Lsp1109I GCAGC 1 cut(s) 124
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 2 cut(s) 90, 154
MalI GATC 1 cut(s) 383
MboI GATC 1 cut(s) 381
MboII GAAGA 5 cut(s) 62, 144, 217, 323, 326
MflI RGATCY 1 cut(s) 381
MluCI AATT 6 cut(s) 51, 282, 309, 348, 388, 423
MnlI CCTC 8 cut(s) 70, 94, 252, 381, 414, 456, 492, 495
MseI TTAA 2 cut(s) 50, 236
MslI CAYNNNNRTG 1 cut(s) 38
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 315
MvaI CCWGG 1 cut(s) 315
NdeII GATC 1 cut(s) 381
NlaIII CATG 2 cut(s) 43, 77
NlaIV GGNNCC 1 cut(s) 105
NmeAIII GCCGAG 1 cut(s) 124
NmuCI GTSAC 1 cut(s) 154
PciSI GCTCTTC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 229
PkrI GCNGC 1 cut(s) 139
Psp6I CCWGG 1 cut(s) 313
PspEI GGTNACC 1 cut(s) 90
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 1 cut(s) 105
PsuI RGATCY 1 cut(s) 381
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
RseI CAYNNNNRTG 1 cut(s) 38
SapI GCTCTTC 1 cut(s) 127
SaqAI TTAA 2 cut(s) 50, 236
SatI GCNGC 1 cut(s) 138
Sau3AI GATC 1 cut(s) 381
ScrFI CCNGG 1 cut(s) 315
SetI ASST 9 cut(s) 50, 88, 139, 156, 220, 244, 261, 373, 406
SmiMI CAYNNNNRTG 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
Sse9I AATT 6 cut(s) 51, 282, 309, 348, 388, 423
SspI AATATT 1 cut(s) 322
StyD4I CCNGG 1 cut(s) 313
TaiI ACGT 1 cut(s) 88
TasI AATT 6 cut(s) 51, 282, 309, 348, 388, 423
TfiI GAWTC 1 cut(s) 229
Tru1I TTAA 2 cut(s) 50, 236
Tru9I TTAA 2 cut(s) 50, 236
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 1 cut(s) 137
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 4 cut(s) 62, 138, 176, 218
XapI RAATTY 1 cut(s) 309
XcmI CCANNNNNNNNNTGG 1 cut(s) 125
XmiI GTMKAC 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.