Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006611

Physical Location & Seq

Genomic Coordinates Forward (+)

21802984 .. 21804787

Gene Structure 1804 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032991

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGACACTTCTGAACTTTTAAGATACAAACAGATGGTGAAAGAATTGGAATCACAACTTTTAATTGAGAGAAAGCTAGCACGTCAGCATGTGGACACAAAAATAGCGGAGCAGCACCTGCAGCAACTGAAACATCAACAAGACGAGCAAACTACTGCACTTGCAAGACCACCTCTAACAAACCGACCATTAACAACTCACAAGATTCTCAATGAGACAGCCATTAATACATTGGGGAAGGACCAAGTAAACCCCGCGCAACAACTAACTGAGAAGGCCAACAACAAAATTCCAGTACCTACAATGGATGGTTTTGTCAAGTATATTGATCCTATAGAGAAAGAAAACAACCCCGACATGGCCGAACAATTTGTTCTACCAAAGAGAACTGGAAGAGACTCTATCTGCCCGACAGTTCAGCGTATTCCTGCTACATCTGCTCCAAGACGCAACTCTCTAATTCCACTCCCTACTGTACCAAACCGTCTCCAATCCCCAATGCCTGTATTATCATTAGCACCAATATCAGCACACCATGCTGATAAGAAAGCTGAAATGGATTATGTGTCTGAAATTGACTGCTTGCCTGAACAGACACCGTGTAGCAGTCCTCAAGTTACCAGAACTGGTGGCAAGAAGTTCAACAGCATACTGAGACGAAGCATCCAAAAGAAAGCTCAGATGAAGTCCCCAATGCCACCACACATGAGAAAAGGTGTGAATGTAGGGATGGAGAAGGTTAGAGTATCTATTGGAAGTCGAGGCAGGATGCCACACAGGGTGTTACTTGGAAATGGTAGAAGGGCAGGTACTAAAGAAGGTCAGAAGCAGATTAGGGAAAAGGAGAGGGGGTGGAACATTGAACTACAAATTCAGTTTGCAATGGAGAAAGATGGTGTCACCGGAATCTGGAAAATCCACACCGATCTAAGGAAGTCGAAGTCCACCCCACCCCCGCCGTCTGTCACATTCTCATCGCCGTCGTCGGTTTACACTTCTTCCAACAAGCCGCCTGCATCGATGCCGTCGTTTTGTAATTTGTACAGCCCGAGAATCTTCAAAAAGGCCGGAATCAAGTCGAAGAACAAAAACTCCTCCGCCGTCGGATCCGTCAATACATTCTTCATCCTCATCCCAACGTTTTTCCTAGACAGCTTGCAGCAGAGAAGGAAGAACTGCTCGCCTCTGGCTTCCTCTAGATCGGCGGCGGCGGCGGCGGCAGCAATTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin Malectin

Protein Analysis

411

Amino Acids

45.71

Weight (kDa)

10.13

Isoelectric Point (pI)

60.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72250 AT1G72250 AT1G72250 AT1G72250
fragaria_vesca	FvH4_3g16110 FvH4_3g16110 FvH4_3g16110
malus_domestica	MD05G1213600.v1.1 MD10G1197400.v1.1
prunus_persica	Prupe.4G144400_v2.0.a1 Prupe.4G144400_v2.0.a1
pyrus_communis	pycom05g19730 pycom10g17030
rosa_chinensis	RchiOBHm_Chr5g0027091
rosa_laevigata	RLG00000032989 RLG00000032991
rosa_multiflora	Rmu_sc0000882.1_g000027 Rmu_sc0006065.1_g000024
rosa_roxburghii	Rroxscaffold_1G00052400
rosa_rugosa	Rorug05G0097200 Rorug05G0097200
rosa_samantha	Rh5AG190900 Rh5BG188500 Rh5CG208300 Rh5DG190300
rosa_wichuraiana	Rw5G017390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	126
Acc36I	ACCTGC	2 cut(s)	126, 797
AccII	CGCG	1 cut(s)	257
AclI	AACGTT	1 cut(s)	1139
AclWI	GGATC	3 cut(s)	323, 1101, 1114
AcoI	YGGCCR	1 cut(s)	360
AcsI	RAATTY	2 cut(s)	288, 870
AdeI	CACNNNGTG	1 cut(s)	781
AfaI	GTAC	4 cut(s)	297, 477, 811, 1043
AfiI	CCNNNNNNNGG	3 cut(s)	358, 909, 930
AgsI	TTSAA	3 cut(s)	643, 863, 1060
AjiI	CACGTC	1 cut(s)	83
AloI	GAACNNNNNNTCC	2 cut(s)	1076, 1108
AluBI	AGCT	4 cut(s)	76, 551, 677, 1155
AluI	AGCT	4 cut(s)	76, 551, 677, 1155
Alw26I	GTCTC	4 cut(s)	209, 390, 491, 649
AlwI	GGATC	3 cut(s)	323, 1101, 1114
AlwNI	CAGNNNCTG	2 cut(s)	118, 127
Ama87I	CYCGRG	1 cut(s)	1048
AoxI	GGCC	3 cut(s)	276, 360, 1065
ApeKI	GCWGC	4 cut(s)	112, 121, 1159, 1220
ApoI	RAATTY	2 cut(s)	288, 870
AseI	ATTAAT	1 cut(s)	225
AspLEI	GCGC	1 cut(s)	259
AspS9I	GGNCC	1 cut(s)	241
AsuHPI	GGTGA	2 cut(s)	49, 892
AsuNHI	GCTAGC	1 cut(s)	76
AvaI	CYCGRG	1 cut(s)	1048
AvaII	GGWCC	1 cut(s)	241
BamHI	GGATCC	1 cut(s)	1106
BarI	GAAGNNNNNNTAC	2 cut(s)	793, 825
BbvI	GCAGC	3 cut(s)	124, 133, 1171
BccI	CCATC	4 cut(s)	28, 302, 724, 887
BceAI	ACGGC	4 cut(s)	943, 964, 1009, 1085
BcoDI	GTCTC	4 cut(s)	209, 390, 491, 649
BfaI	CTAG	3 cut(s)	77, 1148, 1197
BfmI	CTRYAG	2 cut(s)	119, 333
BfuAI	ACCTGC	2 cut(s)	126, 797
Bme18I	GGWCC	1 cut(s)	241
BmeT110I	CYCGRG	1 cut(s)	1048
BmgBI	CACGTC	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	241
BmiI	GGNNCC	1 cut(s)	1108
BmsI	GCATC	4 cut(s)	672, 759, 1011, 1025
BmtI	GCTAGC	1 cut(s)	80
BpuEI	CTTGAG	1 cut(s)	597
Bsa29I	ATCGAT	1 cut(s)	1019
BsaWI	WCCGGW	1 cut(s)	902
BsaXI	ACNNNNNCTCC	6 cut(s)	424, 454, 836, 866, 1076, 1106
Bsc4I	CCNNNNNNNGG	3 cut(s)	358, 909, 930
Bse1I	ACTGG	3 cut(s)	293, 394, 631
Bse3DI	GCAATG	1 cut(s)	888
BseCI	ATCGAT	1 cut(s)	1019
BseGI	GGATG	6 cut(s)	313, 663, 735, 774, 1125, 1131
BseLI	CCNNNNNNNGG	3 cut(s)	358, 909, 930
BseMI	GCAATG	1 cut(s)	888
BseMII	CTCAG	3 cut(s)	261, 644, 692
BseNI	ACTGG	3 cut(s)	293, 394, 631
BseRI	GAGGAG	1 cut(s)	1084
BseXI	GCAGC	3 cut(s)	124, 133, 1171
BsgI	GTGCAG	1 cut(s)	141
Bsh1236I	CGCG	1 cut(s)	257
BshFI	GGCC	3 cut(s)	278, 362, 1067
BshVI	ATCGAT	1 cut(s)	1019
BsiHKCI	CYCGRG	1 cut(s)	1048
BsiSI	CCGG	2 cut(s)	903, 1068
BslFI	GGGAC	1 cut(s)	673
BslI	CCNNNNNNNGG	3 cut(s)	358, 909, 930
BsmAI	GTCTC	4 cut(s)	209, 390, 491, 649
BsmBI	CGTCTC	2 cut(s)	491, 649
BsmFI	GGGAC	1 cut(s)	673
BsnI	GGCC	3 cut(s)	278, 362, 1067
BsoBI	CYCGRG	1 cut(s)	1048
Bsp1407I	TGTACA	1 cut(s)	1041
Bsp143I	GATC	4 cut(s)	328, 925, 1106, 1199
BspANI	GGCC	3 cut(s)	278, 362, 1067
BspCNI	CTCAG	3 cut(s)	262, 645, 691
BspDI	ATCGAT	1 cut(s)	1019
BspFNI	CGCG	1 cut(s)	257
BspLI	GGNNCC	1 cut(s)	1108
BspMAI	CTGCAG	1 cut(s)	123
BspMI	ACCTGC	2 cut(s)	126, 797
BspOI	GCTAGC	1 cut(s)	80
BspPI	GGATC	3 cut(s)	323, 1101, 1114
BsrDI	GCAATG	1 cut(s)	888
BsrGI	TGTACA	1 cut(s)	1041
BsrI	ACTGG	3 cut(s)	293, 394, 631
BssMI	GATC	4 cut(s)	328, 925, 1106, 1199
Bst4CI	ACNGT	4 cut(s)	415, 475, 485, 600
Bst6I	CTCTTC	1 cut(s)	388
BstAPI	GCANNNNNTGC	2 cut(s)	118, 536
BstAUI	TGTACA	1 cut(s)	1041
BstC8I	GCNNGC	5 cut(s)	78, 584, 1014, 1157, 1181
BstDEI	CTNAG	4 cut(s)	270, 653, 678, 929
BstF5I	GGATG	6 cut(s)	313, 663, 735, 774, 1125, 1131
BstFNI	CGCG	1 cut(s)	257
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	4 cut(s)	331, 928, 1109, 1202
BstMAI	GTCTC	4 cut(s)	209, 390, 491, 649
BstMBI	GATC	4 cut(s)	328, 925, 1106, 1199
BstMWI	GCNNNNNNNGC	8 cut(s)	118, 121, 437, 536, 1211, 1214, 1217, 1220
BstNSI	RCATGY	1 cut(s)	92
BstSFI	CTRYAG	2 cut(s)	119, 333
BstUI	CGCG	1 cut(s)	257
BstV1I	GCAGC	3 cut(s)	124, 133, 1171
BstX2I	RGATCY	1 cut(s)	1106
BstYI	RGATCY	1 cut(s)	1106
Bsu15I	ATCGAT	1 cut(s)	1019
BsuRI	GGCC	3 cut(s)	278, 362, 1067
BsuTUI	ATCGAT	1 cut(s)	1019
BtgZI	GCGATG	1 cut(s)	960
BtrI	CACGTC	1 cut(s)	83
BtsCI	GGATG	6 cut(s)	313, 663, 735, 774, 1125, 1131
BveI	ACCTGC	2 cut(s)	126, 797
Cac8I	GCNNGC	5 cut(s)	78, 584, 1014, 1157, 1181
CaiI	CAGNNNCTG	2 cut(s)	118, 127
CfoI	GCGC	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	241
ClaI	ATCGAT	1 cut(s)	1019
CseI	GACGC	1 cut(s)	456
Csp6I	GTAC	4 cut(s)	296, 476, 810, 1042
CviAII	CATG	4 cut(s)	89, 358, 536, 706
CviQI	GTAC	4 cut(s)	296, 476, 810, 1042
DdeI	CTNAG	4 cut(s)	270, 653, 678, 929
DpnI	GATC	4 cut(s)	330, 927, 1108, 1201
DpnII	GATC	4 cut(s)	328, 925, 1106, 1199
DraIII	CACNNNGTG	1 cut(s)	781
EaeI	YGGCCR	1 cut(s)	360
Eam1104I	CTCTTC	1 cut(s)	388
EarI	CTCTTC	1 cut(s)	388
EciI	GGCGGA	1 cut(s)	1087
Eco47I	GGWCC	1 cut(s)	241
Eco88I	CYCGRG	1 cut(s)	1048
Esp3I	CGTCTC	2 cut(s)	491, 649
FaeI	CATG	4 cut(s)	92, 361, 539, 709
FaiI	YATR	8 cut(s)	90, 324, 335, 359, 537, 564, 650, 707
FaqI	GGGAC	1 cut(s)	673
FatI	CATG	4 cut(s)	88, 357, 535, 705
FauI	CCCGC	2 cut(s)	262, 963
FokI	GGATG	6 cut(s)	320, 650, 742, 781, 1112, 1118
FspBI	CTAG	3 cut(s)	77, 1148, 1197
GlaI	GCGC	1 cut(s)	258
HaeIII	GGCC	3 cut(s)	278, 362, 1067
HapII	CCGG	2 cut(s)	903, 1068
HgaI	GACGC	1 cut(s)	456
HhaI	GCGC	1 cut(s)	259
Hin1II	CATG	4 cut(s)	92, 361, 539, 709
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HinfI	GANTC	6 cut(s)	50, 205, 398, 906, 1053, 1071
HpaII	CCGG	2 cut(s)	903, 1068
HphI	GGTGA	2 cut(s)	49, 892
Hpy166II	GTNNAC	4 cut(s)	94, 250, 945, 991
Hpy188I	TCNGA	5 cut(s)	13, 571, 681, 825, 1106
Hpy188III	TCNNGA	2 cut(s)	910, 1197
Hpy8I	GTNNAC	4 cut(s)	94, 250, 945, 991
Hpy99I	CGWCG	4 cut(s)	985, 988, 1030, 1106
HpyAV	CCTTC	6 cut(s)	232, 268, 730, 795, 812, 1161
HpyCH4III	ACNGT	4 cut(s)	415, 475, 485, 600
HpyCH4IV	ACGT	2 cut(s)	82, 1139
HpyCH4V	TGCA	6 cut(s)	121, 158, 164, 881, 1016, 1159
HpyF10VI	GCNNNNNNNGC	8 cut(s)	118, 121, 437, 536, 1211, 1214, 1217, 1220
HpyF3I	CTNAG	4 cut(s)	270, 653, 678, 929
HpySE526I	ACGT	2 cut(s)	82, 1139
Hsp92II	CATG	4 cut(s)	92, 361, 539, 709
HspAI	GCGC	1 cut(s)	257
Kzo9I	GATC	4 cut(s)	328, 925, 1106, 1199
LmnI	GCTCC	2 cut(s)	109, 445
Lsp1109I	GCAGC	3 cut(s)	124, 133, 1171
LweI	GCATC	4 cut(s)	672, 759, 1011, 1025
MaeI	CTAG	3 cut(s)	77, 1148, 1197
MaeII	ACGT	2 cut(s)	82, 1139
MaeIII	GTNAC	4 cut(s)	616, 783, 898, 964
MalI	GATC	4 cut(s)	330, 927, 1108, 1201
MboI	GATC	4 cut(s)	328, 925, 1106, 1199
MboII	GAAGA	6 cut(s)	405, 990, 1048, 1093, 1114, 1183
MflI	RGATCY	1 cut(s)	1106
MluCI	AATT	9 cut(s)	44, 63, 288, 368, 459, 573, 870, 1036, 1224
MlyI	GAGTC	1 cut(s)	392
MmeI	TCCRAC	2 cut(s)	1026, 1084
MnlI	CCTC	8 cut(s)	183, 621, 755, 840, 1105, 1139, 1194, 1204
MseI	TTAA	4 cut(s)	20, 62, 191, 225
MspI	CCGG	2 cut(s)	903, 1068
MvnI	CGCG	1 cut(s)	257
MwoI	GCNNNNNNNGC	8 cut(s)	118, 121, 437, 536, 1211, 1214, 1217, 1220
NdeII	GATC	4 cut(s)	328, 925, 1106, 1199
NheI	GCTAGC	1 cut(s)	76
NlaIII	CATG	4 cut(s)	92, 361, 539, 709
NlaIV	GGNNCC	1 cut(s)	1108
NmuCI	GTSAC	2 cut(s)	898, 964
NspI	RCATGY	1 cut(s)	92
PaqCI	CACCTGC	1 cut(s)	126
PcsI	WCGNNNNNNNCGW	1 cut(s)	1025
PfeI	GAWTC	5 cut(s)	50, 205, 906, 1053, 1071
PleI	GAGTC	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	392
PshBI	ATTAAT	1 cut(s)	225
Psp1406I	AACGTT	1 cut(s)	1139
PspN4I	GGNNCC	1 cut(s)	1108
PspPI	GGNCC	1 cut(s)	241
PstI	CTGCAG	1 cut(s)	123
PstNI	CAGNNNCTG	2 cut(s)	118, 127
PsuI	RGATCY	1 cut(s)	1106
RsaI	GTAC	4 cut(s)	297, 477, 811, 1043
RsaNI	GTAC	4 cut(s)	296, 476, 810, 1042
SaqAI	TTAA	4 cut(s)	20, 62, 191, 225
Sau3AI	GATC	4 cut(s)	328, 925, 1106, 1199
Sau96I	GGNCC	1 cut(s)	241
SchI	GAGTC	1 cut(s)	392
SfaNI	GCATC	4 cut(s)	672, 759, 1011, 1025
SfcI	CTRYAG	2 cut(s)	119, 333
SinI	GGWCC	1 cut(s)	241
SmlI	CTYRAG	1 cut(s)	612
SmoI	CTYRAG	1 cut(s)	612
Sse9I	AATT	9 cut(s)	44, 63, 288, 368, 459, 573, 870, 1036, 1224
SspMI	CTAG	3 cut(s)	77, 1148, 1197
TaaI	ACNGT	4 cut(s)	415, 475, 485, 600
TaiI	ACGT	2 cut(s)	85, 1142
TaqI	TCGA	4 cut(s)	760, 938, 1019, 1079
TasI	AATT	9 cut(s)	44, 63, 288, 368, 459, 573, 870, 1036, 1224
TatI	WGTACW	1 cut(s)	1041
TauI	GCSGC	6 cut(s)	1012, 1208, 1211, 1214, 1217, 1220
TfiI	GAWTC	5 cut(s)	50, 205, 906, 1053, 1071
Tru1I	TTAA	4 cut(s)	20, 62, 191, 225
Tru9I	TTAA	4 cut(s)	20, 62, 191, 225
TseFI	GTSAC	2 cut(s)	898, 964
TseI	GCWGC	4 cut(s)	112, 121, 1159, 1220
Tsp45I	GTSAC	2 cut(s)	898, 964
TspDTI	ATGAA	2 cut(s)	698, 1114
TspGWI	ACGGA	1 cut(s)	1099
VpaK11BI	GGWCC	1 cut(s)	241
VspI	ATTAAT	1 cut(s)	225
XapI	RAATTY	2 cut(s)	288, 870
XbaI	TCTAGA	1 cut(s)	1196
XceI	RCATGY	1 cut(s)	92
XcmI	CCANNNNNNNNNTGG	1 cut(s)	229
XspI	CTAG	3 cut(s)	77, 1148, 1197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.