Rorug05G0097200
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0006611
Physical Location & Seq
Forward (+)
8592657 .. 8595534
2878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0097200.1

Sequence Viewer

Length: 576 bp
ATGTGGGCCGTTAGAAACCTAAATGGACCAACTCGAAACACAAATCGAATGAACTACTGGGTCGGCCCAGTTTTCCTTTCGTCCTTTTTTTCCTCTCTATATATAAAGATTTCTGAATTCGCGTCCGACCAACGCAAACCCAGGTCGGAGCGCTTAGATCTCTACTCACAACTTGAATCAATGGCTGATCCCGAACTCGAAGCAATCAGACAAAGAAGAATGCAGGAGCTTATGGCTCAACAAGGCGCTGGAGGGGCCAGAGGGCAGCAAAACCCTGAACAGCAGAAGGCAAATGATGATGCCAAGAGGGAGGCAGAAGAACGGAGGCAGATGATGCTTAGTCAGATTTTGTCATCTGAAGCTCGAGAAAGACTTGCTCGAATTGCTTTGGTGAAACCTGAGAAGGCAAGAGGTGTTGAAGATGTCATACTGAGAGCTGCTCAAATGGGCCAAATAGCTGAGAAGGTTACTGAGGAGAAGCTTATTTCATTGTTGGAACAGATCAACAACCAAACCACCAAGCAGACTAAAGTCACTATTCAGAGGCGTCGGAATGTTCTTGAAGATGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Kinesin Malectin

Protein Analysis

191

Amino Acids

22.05

Weight (kDa)

9.25

Isoelectric Point (pI)

49.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dsDNA_bind PF01984 69 - 183 1.2e-31 Double-stranded DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 122
AclWI GGATC 1 cut(s) 182
AcsI RAATTY 1 cut(s) 116
AcuI CTGAAG 1 cut(s) 378
AcyI GRCGYC 1 cut(s) 547
AfeI AGCGCT 1 cut(s) 152
AgsI TTSAA 3 cut(s) 176, 419, 563
AjnI CCWGG 1 cut(s) 140
AluBI AGCT 5 cut(s) 229, 362, 437, 458, 481
AluI AGCT 5 cut(s) 229, 362, 437, 458, 481
AlwI GGATC 1 cut(s) 182
Ama87I CYCGRG 1 cut(s) 363
Aor51HI AGCGCT 1 cut(s) 152
AoxI GGCC 4 cut(s) 6, 64, 255, 448
ApeKI GCWGC 2 cut(s) 265, 437
ApoI RAATTY 1 cut(s) 116
AspLEI GCGC 2 cut(s) 153, 248
AspS9I GGNCC 5 cut(s) 6, 26, 65, 255, 448
AsuHPI GGTGA 1 cut(s) 403
AvaI CYCGRG 1 cut(s) 363
AvaII GGWCC 1 cut(s) 26
BarI GAAGNNNNNNTAC 2 cut(s) 411, 443
BbvI GCAGC 2 cut(s) 277, 424
BciT130I CCWGG 1 cut(s) 142
BfoI RGCGCY 2 cut(s) 154, 249
BglII AGATCT 1 cut(s) 157
BisI GCNGC 2 cut(s) 266, 438
BlsI GCNGC 2 cut(s) 267, 439
Bme1390I CCNGG 1 cut(s) 142
Bme18I GGWCC 1 cut(s) 26
BmeT110I CYCGRG 1 cut(s) 363
BmgT120I GGNCC 5 cut(s) 6, 26, 65, 255, 448
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 142
BmrI ACTGGG 2 cut(s) 62, 67
BmsI GCATC 2 cut(s) 289, 324
BmuI ACTGGG 2 cut(s) 62, 67
BoxI GACNNNNGTC 1 cut(s) 530
BplI GAGNNNNNCTC 2 cut(s) 424, 456
BpmI CTGGAG 1 cut(s) 270
BsaHI GRCGYC 1 cut(s) 547
BsaJI CCNNGG 1 cut(s) 140
Bse1I ACTGG 2 cut(s) 62, 68
BseBI CCWGG 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 140
BseMII CTCAG 4 cut(s) 390, 422, 450, 462
BseNI ACTGG 2 cut(s) 62, 68
BseRI GAGGAG 1 cut(s) 488
BseXI GCAGC 2 cut(s) 277, 424
Bsh1236I CGCG 1 cut(s) 122
BshFI GGCC 4 cut(s) 8, 66, 257, 450
BsiHKCI CYCGRG 1 cut(s) 363
BsmI GAATGC 1 cut(s) 225
BsnI GGCC 4 cut(s) 8, 66, 257, 450
BsoBI CYCGRG 1 cut(s) 363
Bsp143I GATC 3 cut(s) 157, 187, 501
BspANI GGCC 4 cut(s) 8, 66, 257, 450
BspCNI CTCAG 4 cut(s) 391, 423, 451, 463
BspFNI CGCG 1 cut(s) 122
BspLI GGNNCC 1 cut(s) 256
BspPI GGATC 1 cut(s) 182
BsrI ACTGG 2 cut(s) 62, 68
BssECI CCNNGG 1 cut(s) 140
BssMI GATC 3 cut(s) 157, 187, 501
BssNI GRCGYC 1 cut(s) 547
Bst2UI CCWGG 1 cut(s) 142
BstACI GRCGYC 1 cut(s) 547
BstAPI GCANNNNNTGC 1 cut(s) 334
BstDEI CTNAG 6 cut(s) 154, 338, 399, 431, 459, 471
BstFNI CGCG 1 cut(s) 122
BstH2I RGCGCY 2 cut(s) 154, 249
BstHHI GCGC 2 cut(s) 153, 248
BstKTI GATC 3 cut(s) 160, 190, 504
BstMBI GATC 3 cut(s) 157, 187, 501
BstMWI GCNNNNNNNGC 3 cut(s) 254, 334, 383
BstNI CCWGG 1 cut(s) 142
BstPAI GACNNNNGTC 1 cut(s) 530
BstSCI CCNGG 1 cut(s) 140
BstUI CGCG 1 cut(s) 122
BstV1I GCAGC 2 cut(s) 277, 424
BstX2I RGATCY 1 cut(s) 157
BstYI RGATCY 1 cut(s) 157
BsuRI GGCC 4 cut(s) 8, 66, 257, 450
CfoI GCGC 2 cut(s) 153, 248
Cfr13I GGNCC 5 cut(s) 6, 26, 65, 255, 448
CseI GACGC 2 cut(s) 111, 536
DdeI CTNAG 6 cut(s) 154, 338, 399, 431, 459, 471
DpnI GATC 3 cut(s) 159, 189, 503
DpnII GATC 3 cut(s) 157, 187, 501
Eco47I GGWCC 1 cut(s) 26
Eco47III AGCGCT 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 378
Eco88I CYCGRG 1 cut(s) 363
EcoRI GAATTC 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 140
FaiI YATR 5 cut(s) 100, 102, 104, 233, 428
Fnu4HI GCNGC 2 cut(s) 266, 438
Fsp4HI GCNGC 2 cut(s) 266, 438
GlaI GCGC 2 cut(s) 152, 247
GluI GCNGC 2 cut(s) 266, 438
GsuI CTGGAG 1 cut(s) 270
HaeII RGCGCY 2 cut(s) 154, 249
HaeIII GGCC 4 cut(s) 8, 66, 257, 450
HgaI GACGC 2 cut(s) 111, 536
HhaI GCGC 2 cut(s) 153, 248
Hin1I GRCGYC 1 cut(s) 547
Hin6I GCGC 2 cut(s) 151, 246
HinP1I GCGC 2 cut(s) 151, 246
HindIII AAGCTT 1 cut(s) 479
HinfI GANTC 1 cut(s) 176
HphI GGTGA 1 cut(s) 403
Hpy188I TCNGA 8 cut(s) 115, 127, 148, 209, 345, 358, 543, 552
Hpy188III TCNNGA 3 cut(s) 191, 365, 560
Hpy99I CGWCG 1 cut(s) 552
HpyAV CCTTC 3 cut(s) 280, 397, 457
HpyCH4V TGCA 1 cut(s) 223
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 334, 383
HpyF3I CTNAG 6 cut(s) 154, 338, 399, 431, 459, 471
Hsp92I GRCGYC 1 cut(s) 547
HspAI GCGC 2 cut(s) 151, 246
Kzo9I GATC 3 cut(s) 157, 187, 501
LmnI GCTCC 2 cut(s) 148, 226
LpnPI CCDG 9 cut(s) 43, 81, 127, 154, 209, 234, 271, 288, 411
Lsp1109I GCAGC 2 cut(s) 277, 424
LweI GCATC 2 cut(s) 289, 324
MaeIII GTNAC 2 cut(s) 466, 532
MalI GATC 3 cut(s) 159, 189, 503
MboI GATC 3 cut(s) 157, 187, 501
MboII GAAGA 4 cut(s) 228, 329, 431, 575
MflI RGATCY 1 cut(s) 157
MluCI AATT 2 cut(s) 116, 381
MmeI TCCRAC 4 cut(s) 126, 150, 474, 530
MnlI CCTC 9 cut(s) 103, 245, 254, 300, 304, 318, 404, 466, 537
MspR9I CCNGG 1 cut(s) 142
Mva1269I GAATGC 1 cut(s) 225
MvaI CCWGG 1 cut(s) 142
MvnI CGCG 1 cut(s) 122
MwoI GCNNNNNNNGC 3 cut(s) 254, 334, 383
NdeII GATC 3 cut(s) 157, 187, 501
NlaIV GGNNCC 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 532
PaeR7I CTCGAG 1 cut(s) 363
PctI GAATGC 1 cut(s) 225
PfeI GAWTC 1 cut(s) 176
PkrI GCNGC 2 cut(s) 267, 439
PshAI GACNNNNGTC 1 cut(s) 530
Psp6I CCWGG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 140
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 5 cut(s) 6, 26, 65, 255, 448
PsuI RGATCY 1 cut(s) 157
SatI GCNGC 2 cut(s) 266, 438
Sau3AI GATC 3 cut(s) 157, 187, 501
Sau96I GGNCC 5 cut(s) 6, 26, 65, 255, 448
ScrFI CCNGG 1 cut(s) 142
SfaNI GCATC 2 cut(s) 289, 324
Sfr274I CTCGAG 1 cut(s) 363
SinI GGWCC 1 cut(s) 26
SlaI CTCGAG 1 cut(s) 363
SmlI CTYRAG 1 cut(s) 363
SmoI CTYRAG 1 cut(s) 363
Sse9I AATT 2 cut(s) 116, 381
StyD4I CCNGG 1 cut(s) 140
TaqI TCGA 5 cut(s) 34, 46, 198, 364, 379
TasI AATT 2 cut(s) 116, 381
TfiI GAWTC 1 cut(s) 176
TseFI GTSAC 1 cut(s) 532
TseI GCWGC 2 cut(s) 265, 437
Tsp45I GTSAC 1 cut(s) 532
TspDTI ATGAA 2 cut(s) 65, 477
TspGWI ACGGA 1 cut(s) 337
VpaK11BI GGWCC 1 cut(s) 26
XapI RAATTY 1 cut(s) 116
XhoI CTCGAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.