RLG00000033305
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0023005
Physical Location & Seq
Reverse (-)
25543253 .. 25544002
750 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033305

Sequence Viewer

Length: 750 bp
ATGGACGCAACTAGTGTCTCAGATGTGTTCCTGCTTCGCGGTTCCTCAAAGGTTCCCATGCTGCAGGAACTTGTGCAAGTGTGCCTTAGAATTAGAGGGATTCAAGTGAGTATCAACAGAGAAGAAAAAGAGCCGGTAGTTGCAGCTCTTGTAGGTGCAATGTTGTGCACAGCTAGTACAAAAGATGTGCAGTCTCTATCAATTTGTGATGCAACTACACTATCCGTGAGTTGTGTGGCATTCAGCCTGATAATACAACTGCTTGCCCTACTATCCCCAAAACAAAATAGGTTGGAGGTCCTGAATAAGAAGACTGTCATTCCAAGGAAGACTCCCATTCCAGCAATTAACAAGACAGTTATTAACTTTTGGTTCTCTAGAAGAGGTCACAAGAAAAGAAGCATGATGACTCTTTATGAGGGTGATGACATGAAAAAGTTGGGGAAATTCGAGTTTACTGACATTCCAAGTGGTGCTTCCAAGATCACTATTTTGTTTGAAATTAATTCCGATGGCATCTTGGAGGTTAGCGCGGAGGCGGAGAACAAAAATATCACAATCAGCAGTGAGGTCAAAGATCGATTTACCAGAGTTGAAATGTTCCACCTCATTCAGGCTGCCTGGAAGTACAGACATGAAGATGATCACTATTACAAAACCAAGCTGCTGCTGGTCAAACAAGATGAGGAAGGTGAGCCAAGCCGACGTATATTGACTGCTATATGGAATATTCTTAGGCCTAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

250

Amino Acids

28.22

Weight (kDa)

9.3

Isoelectric Point (pI)

51.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 2 - 216 2.4e-13 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023005)

Species Orthologous Gene IDs
rosa_laevigata RLG00000033305
rosa_multiflora Rmu_sc0014478.1_g000007
rosa_rugosa Rorug05G0125200
rosa_samantha Rh5AG218000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 39, 533
AciI CCGC 3 cut(s) 39, 533, 539
AcsI RAATTY 1 cut(s) 446
AfaI GTAC 2 cut(s) 178, 629
AfiI CCNNNNNNNGG 1 cut(s) 613
AgsI TTSAA 3 cut(s) 104, 500, 596
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 1 cut(s) 620
AjuI GAANNNNNNNTTGG 2 cut(s) 460, 492
AluBI AGCT 3 cut(s) 146, 173, 664
AluI AGCT 3 cut(s) 146, 173, 664
Alw21I GWGCWC 1 cut(s) 170
Alw26I GTCTC 2 cut(s) 22, 198
Alw44I GTGCAC 1 cut(s) 166
AoxI GGCC 1 cut(s) 737
ApaLI GTGCAC 1 cut(s) 166
ApeKI GCWGC 5 cut(s) 61, 143, 617, 664, 667
ApoI RAATTY 1 cut(s) 446
AseI ATTAAT 1 cut(s) 504
AspLEI GCGC 1 cut(s) 533
AspS9I GGNCC 1 cut(s) 298
AsuHPI GGTGA 2 cut(s) 434, 704
AvaII GGWCC 1 cut(s) 298
BaeGI GKGCMC 1 cut(s) 170
BbsI GAAGAC 2 cut(s) 317, 335
Bbv12I GWGCWC 1 cut(s) 170
BbvI GCAGC 5 cut(s) 48, 155, 604, 651, 654
BccI CCATC 1 cut(s) 506
BciT130I CCWGG 1 cut(s) 622
BclI TGATCA 1 cut(s) 643
BcoDI GTCTC 2 cut(s) 22, 198
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 3 cut(s) 12, 174, 378
BfmI CTRYAG 1 cut(s) 62
BisI GCNGC 5 cut(s) 62, 144, 618, 665, 668
BlsI GCNGC 5 cut(s) 63, 145, 619, 666, 669
Bme1390I CCNGG 1 cut(s) 622
Bme18I GGWCC 1 cut(s) 298
BmgT120I GGNCC 1 cut(s) 298
BmiI GGNNCC 2 cut(s) 43, 54
BmrFI CCNGG 1 cut(s) 622
BmsI GCATC 2 cut(s) 199, 525
BpiI GAAGAC 2 cut(s) 317, 335
Bsa29I ATCGAT 1 cut(s) 580
BsaJI CCNNGG 1 cut(s) 323
Bsc4I CCNNNNNNNGG 1 cut(s) 613
Bse118I RCCGGY 1 cut(s) 133
Bse3DI GCAATG 1 cut(s) 165
BseBI CCWGG 1 cut(s) 622
BseCI ATCGAT 1 cut(s) 580
BseDI CCNNGG 1 cut(s) 323
BseLI CCNNNNNNNGG 1 cut(s) 613
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 33
BseSI GKGCMC 1 cut(s) 170
BseXI GCAGC 5 cut(s) 48, 155, 604, 651, 654
BsgI GTGCAG 1 cut(s) 209
Bsh1236I CGCG 2 cut(s) 39, 533
BshFI GGCC 1 cut(s) 739
BshVI ATCGAT 1 cut(s) 580
BsiHKAI GWGCWC 1 cut(s) 170
BsiSI CCGG 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 613
BsmAI GTCTC 2 cut(s) 22, 198
BsmI GAATGC 1 cut(s) 239
BsnI GGCC 1 cut(s) 739
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 3 cut(s) 483, 577, 643
BspACI CCGC 3 cut(s) 39, 533, 539
BspANI GGCC 1 cut(s) 739
BspCNI CTCAG 1 cut(s) 32
BspDI ATCGAT 1 cut(s) 580
BspFNI CGCG 2 cut(s) 39, 533
BspLI GGNNCC 2 cut(s) 43, 54
BspMAI CTGCAG 1 cut(s) 66
BsrDI GCAATG 1 cut(s) 165
BsrFI RCCGGY 1 cut(s) 133
BssAI RCCGGY 1 cut(s) 133
BssECI CCNNGG 1 cut(s) 323
BssMI GATC 3 cut(s) 483, 577, 643
BssT1I CCWWGG 1 cut(s) 323
Bst2UI CCWGG 1 cut(s) 622
Bst4CI ACNGT 2 cut(s) 316, 358
Bst6I CTCTTC 1 cut(s) 376
BstC8I GCNNGC 1 cut(s) 264
BstDEI CTNAG 4 cut(s) 19, 86, 734, 741
BstENI CCTNNNNNAGG 1 cut(s) 611
BstFNI CGCG 2 cut(s) 39, 533
BstHHI GCGC 1 cut(s) 533
BstKTI GATC 3 cut(s) 486, 580, 646
BstMAI GTCTC 2 cut(s) 22, 198
BstMBI GATC 3 cut(s) 483, 577, 643
BstNI CCWGG 1 cut(s) 622
BstSCI CCNGG 1 cut(s) 620
BstSFI CTRYAG 1 cut(s) 62
BstSLI GKGCMC 1 cut(s) 170
BstUI CGCG 2 cut(s) 39, 533
BstV1I GCAGC 5 cut(s) 48, 155, 604, 651, 654
BstV2I GAAGAC 2 cut(s) 317, 335
Bsu15I ATCGAT 1 cut(s) 580
BsuRI GGCC 1 cut(s) 739
BsuTUI ATCGAT 1 cut(s) 580
BtsI GCAGTG 1 cut(s) 571
BtsIMutI CAGTG 1 cut(s) 571
Cac8I GCNNGC 1 cut(s) 264
CfoI GCGC 1 cut(s) 533
Cfr10I RCCGGY 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 298
ClaI ATCGAT 1 cut(s) 580
CseI GACGC 1 cut(s) 14
Csp6I GTAC 2 cut(s) 177, 628
CviAII CATG 4 cut(s) 58, 403, 430, 635
CviJI RGCY 9 cut(s) 133, 146, 173, 246, 617, 664, 697, 702, 739
CviKI_1 RGCY 9 cut(s) 133, 146, 173, 246, 617, 664, 697, 702, 739
CviQI GTAC 2 cut(s) 177, 628
DdeI CTNAG 4 cut(s) 19, 86, 734, 741
DpnI GATC 3 cut(s) 485, 579, 645
DpnII GATC 3 cut(s) 483, 577, 643
Eam1104I CTCTTC 1 cut(s) 376
EarI CTCTTC 1 cut(s) 376
EciI GGCGGA 1 cut(s) 554
Eco130I CCWWGG 1 cut(s) 323
Eco147I AGGCCT 1 cut(s) 739
Eco47I GGWCC 1 cut(s) 298
EcoNI CCTNNNNNAGG 1 cut(s) 611
EcoO109I RGGNCCY 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 620
EcoT14I CCWWGG 1 cut(s) 323
ErhI CCWWGG 1 cut(s) 323
FaeI CATG 4 cut(s) 61, 406, 433, 638
FaiI YATR 8 cut(s) 59, 404, 417, 431, 636, 710, 722, 724
FalI AAGNNNNNCTT 4 cut(s) 69, 101, 460, 492
FatI CATG 4 cut(s) 57, 402, 429, 634
FbaI TGATCA 1 cut(s) 643
Fnu4HI GCNGC 5 cut(s) 62, 144, 618, 665, 668
Fsp4HI GCNGC 5 cut(s) 62, 144, 618, 665, 668
FspBI CTAG 3 cut(s) 12, 174, 378
GlaI GCGC 1 cut(s) 532
GluI GCNGC 5 cut(s) 62, 144, 618, 665, 668
HaeIII GGCC 1 cut(s) 739
HapII CCGG 1 cut(s) 134
HgaI GACGC 1 cut(s) 14
HhaI GCGC 1 cut(s) 533
Hin1II CATG 4 cut(s) 61, 406, 433, 638
Hin6I GCGC 1 cut(s) 531
HinP1I GCGC 1 cut(s) 531
HinfI GANTC 3 cut(s) 100, 331, 409
HpaII CCGG 1 cut(s) 134
HphI GGTGA 2 cut(s) 434, 704
Hpy166II GTNNAC 2 cut(s) 168, 456
Hpy188I TCNGA 2 cut(s) 22, 511
Hpy188III TCNNGA 2 cut(s) 301, 378
Hpy8I GTNNAC 2 cut(s) 168, 456
Hpy99I CGWCG 1 cut(s) 708
HpyAV CCTTC 1 cut(s) 683
HpyCH4III ACNGT 2 cut(s) 316, 358
HpyCH4IV ACGT 1 cut(s) 706
HpyCH4V TGCA 7 cut(s) 64, 76, 143, 158, 168, 190, 212
HpyF3I CTNAG 4 cut(s) 19, 86, 734, 741
HpySE526I ACGT 1 cut(s) 706
Hsp92II CATG 4 cut(s) 61, 406, 433, 638
HspAI GCGC 1 cut(s) 531
Ksp22I TGATCA 1 cut(s) 643
Kzo9I GATC 3 cut(s) 483, 577, 643
Lsp1109I GCAGC 5 cut(s) 48, 155, 604, 651, 654
LweI GCATC 2 cut(s) 199, 525
MaeI CTAG 3 cut(s) 12, 174, 378
MaeII ACGT 1 cut(s) 706
MaeIII GTNAC 1 cut(s) 386
MalI GATC 3 cut(s) 485, 579, 645
MboI GATC 3 cut(s) 483, 577, 643
MboII GAAGA 5 cut(s) 134, 322, 340, 393, 650
MhlI GDGCHC 1 cut(s) 170
MluCI AATT 6 cut(s) 90, 201, 345, 446, 501, 505
MlyI GAGTC 2 cut(s) 325, 403
MmeI TCCRAC 1 cut(s) 273
MseI TTAA 3 cut(s) 348, 363, 504
MslI CAYNNNNRTG 1 cut(s) 639
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 1 cut(s) 622
Mva1269I GAATGC 1 cut(s) 239
MvaI CCWGG 1 cut(s) 622
MvnI CGCG 2 cut(s) 39, 533
NdeII GATC 3 cut(s) 483, 577, 643
NlaIII CATG 4 cut(s) 61, 406, 433, 638
NlaIV GGNNCC 2 cut(s) 43, 54
NmuCI GTSAC 1 cut(s) 386
PceI AGGCCT 1 cut(s) 739
PctI GAATGC 1 cut(s) 239
PfeI GAWTC 1 cut(s) 100
PkrI GCNGC 5 cut(s) 63, 145, 619, 666, 669
PleI GAGTC 2 cut(s) 325, 403
PpsI GAGTC 2 cut(s) 325, 403
PpuMI RGGWCCY 1 cut(s) 298
PshBI ATTAAT 1 cut(s) 504
Psp5II RGGWCCY 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 620
PspGI CCWGG 1 cut(s) 620
PspN4I GGNNCC 2 cut(s) 43, 54
PspPI GGNCC 1 cut(s) 298
PspPPI RGGWCCY 1 cut(s) 298
PstI CTGCAG 1 cut(s) 66
RsaI GTAC 2 cut(s) 178, 629
RsaNI GTAC 2 cut(s) 177, 628
RseI CAYNNNNRTG 1 cut(s) 639
SaqAI TTAA 3 cut(s) 348, 363, 504
SatI GCNGC 5 cut(s) 62, 144, 618, 665, 668
Sau3AI GATC 3 cut(s) 483, 577, 643
Sau96I GGNCC 1 cut(s) 298
SchI GAGTC 2 cut(s) 325, 403
ScrFI CCNGG 1 cut(s) 622
SduI GDGCHC 1 cut(s) 170
SfaNI GCATC 2 cut(s) 199, 525
SfcI CTRYAG 1 cut(s) 62
SinI GGWCC 1 cut(s) 298
SmiMI CAYNNNNRTG 1 cut(s) 639
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 6 cut(s) 90, 201, 345, 446, 501, 505
SseBI AGGCCT 1 cut(s) 739
SsiI CCGC 3 cut(s) 39, 533, 539
SspI AATATT 1 cut(s) 730
SspMI CTAG 3 cut(s) 12, 174, 378
StuI AGGCCT 1 cut(s) 739
StyD4I CCNGG 1 cut(s) 620
StyI CCWWGG 1 cut(s) 323
TaaI ACNGT 2 cut(s) 316, 358
TaiI ACGT 1 cut(s) 709
TaqI TCGA 2 cut(s) 450, 580
TasI AATT 6 cut(s) 90, 201, 345, 446, 501, 505
TatI WGTACW 2 cut(s) 176, 627
TfiI GAWTC 1 cut(s) 100
Tru1I TTAA 3 cut(s) 348, 363, 504
Tru9I TTAA 3 cut(s) 348, 363, 504
TscAI CASTG 1 cut(s) 571
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 5 cut(s) 61, 143, 617, 664, 667
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 2 cut(s) 446, 651
TspGWI ACGGA 1 cut(s) 214
TspRI CASTG 1 cut(s) 571
VneI GTGCAC 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 298
VspI ATTAAT 1 cut(s) 504
XagI CCTNNNNNAGG 1 cut(s) 611
XapI RAATTY 1 cut(s) 446
XbaI TCTAGA 1 cut(s) 377
XcmI CCANNNNNNNNNTGG 1 cut(s) 667
XspI CTAG 3 cut(s) 12, 174, 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.