Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014478.1

Orthogroup ID

OG0023005

Physical Location & Seq

Genomic Coordinates Reverse (-)

20672 .. 21106

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014478.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atggatgcaactagtgtctcggatgtgttgctgcttggctgttcctcaaaggtccccatgctgcaggaacttgtgcgagtgtaccttagagttagagggattcaagtgagtatcaacagagaagaagaagagccggtggttgcttatggtgcatctcttgtaggtgcaatgttgtgcacagctagtataaaggaggtgcagtctctatcgatttgtcatgcaactacactgtccgtgagtcatgtgacattcagcccgataatacaactacttgccctactatccccaaaacaaaaaaagttggaggccctgaataagaagactgttattccaaggaagactcccattccagcaattaacaagagtacaagacagttattaacttttggttctctgaagaggtcacaagaaaagaagcatgatgactctttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70

Protein Analysis

144

Amino Acids

15.78

Weight (kDa)

9.55

Isoelectric Point (pI)

50.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023005)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000033305
rosa_multiflora	Rmu_sc0014478.1_g000007
rosa_rugosa	Rorug05G0125200
rosa_samantha	Rh5AG218000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	416
AfaI	GTAC	2 cut(s)	83, 367
AgsI	TTSAA	1 cut(s)	104
AhlI	ACTAGT	1 cut(s)	11
AluBI	AGCT	1 cut(s)	182
AluI	AGCT	1 cut(s)	182
Alw21I	GWGCWC	1 cut(s)	179
Alw26I	GTCTC	2 cut(s)	22, 207
Alw44I	GTGCAC	1 cut(s)	175
AoxI	GGCC	1 cut(s)	306
ApaLI	GTGCAC	1 cut(s)	175
ApeKI	GCWGC	2 cut(s)	31, 61
AspS9I	GGNCC	2 cut(s)	52, 307
AvaII	GGWCC	1 cut(s)	52
BaeGI	GKGCMC	1 cut(s)	179
BbsI	GAAGAC	2 cut(s)	326, 344
Bbv12I	GWGCWC	1 cut(s)	179
BbvI	GCAGC	2 cut(s)	18, 48
BcoDI	GTCTC	2 cut(s)	22, 207
BcuI	ACTAGT	1 cut(s)	11
BfaI	CTAG	2 cut(s)	12, 183
BfmI	CTRYAG	1 cut(s)	62
BisI	GCNGC	2 cut(s)	32, 62
BlsI	GCNGC	2 cut(s)	33, 63
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	2 cut(s)	52, 307
BmiI	GGNNCC	1 cut(s)	54
BmsI	GCATC	1 cut(s)	161
BpiI	GAAGAC	2 cut(s)	326, 344
Bsa29I	ATCGAT	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	332
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bse118I	RCCGGY	1 cut(s)	133
Bse3DI	GCAATG	1 cut(s)	174
BseCI	ATCGAT	1 cut(s)	209
BseDI	CCNNGG	1 cut(s)	332
BseGI	GGATG	2 cut(s)	10, 28
BseMI	GCAATG	1 cut(s)	174
BseSI	GKGCMC	1 cut(s)	179
BseXI	GCAGC	2 cut(s)	18, 48
BsgI	GTGCAG	1 cut(s)	218
BshFI	GGCC	1 cut(s)	308
BshVI	ATCGAT	1 cut(s)	209
BsiHKAI	GWGCWC	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	38
BsmAI	GTCTC	2 cut(s)	22, 207
BsmFI	GGGAC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	179
BspANI	GGCC	1 cut(s)	308
BspDI	ATCGAT	1 cut(s)	209
BspLI	GGNNCC	1 cut(s)	54
BspMAI	CTGCAG	1 cut(s)	66
BspQI	GCTCTTC	1 cut(s)	123
BsrDI	GCAATG	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	133
BssAI	RCCGGY	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	332
BssT1I	CCWWGG	1 cut(s)	332
Bst4CI	ACNGT	3 cut(s)	231, 325, 375
Bst6I	CTCTTC	2 cut(s)	123, 392
BstDEI	CTNAG	1 cut(s)	86
BstF5I	GGATG	2 cut(s)	10, 28
BstMAI	GTCTC	2 cut(s)	22, 207
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstSFI	CTRYAG	1 cut(s)	62
BstSLI	GKGCMC	1 cut(s)	179
BstV1I	GCAGC	2 cut(s)	18, 48
BstV2I	GAAGAC	2 cut(s)	326, 344
Bsu15I	ATCGAT	1 cut(s)	209
BsuRI	GGCC	1 cut(s)	308
BsuTUI	ATCGAT	1 cut(s)	209
BtsCI	GGATG	2 cut(s)	10, 28
BtsIMutI	CAGTG	1 cut(s)	227
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	2 cut(s)	52, 307
ClaI	ATCGAT	1 cut(s)	209
Csp6I	GTAC	2 cut(s)	82, 366
CviAII	CATG	4 cut(s)	58, 218, 242, 419
CviJI	RGCY	5 cut(s)	39, 133, 182, 255, 308
CviKI_1	RGCY	5 cut(s)	39, 133, 182, 255, 308
CviQI	GTAC	2 cut(s)	82, 366
DdeI	CTNAG	1 cut(s)	86
Eam1104I	CTCTTC	2 cut(s)	123, 392
EarI	CTCTTC	2 cut(s)	123, 392
Eco130I	CCWWGG	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	416
EcoO109I	RGGNCCY	2 cut(s)	52, 307
EcoT14I	CCWWGG	1 cut(s)	332
ErhI	CCWWGG	1 cut(s)	332
FaeI	CATG	4 cut(s)	61, 221, 245, 422
FaiI	YATR	7 cut(s)	59, 147, 188, 219, 243, 420, 433
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	4 cut(s)	57, 217, 241, 418
Fnu4HI	GCNGC	2 cut(s)	32, 62
FokI	GGATG	2 cut(s)	17, 35
Fsp4HI	GCNGC	2 cut(s)	32, 62
FspBI	CTAG	2 cut(s)	12, 183
GluI	GCNGC	2 cut(s)	32, 62
HaeIII	GGCC	1 cut(s)	308
HapII	CCGG	1 cut(s)	134
Hin1II	CATG	4 cut(s)	61, 221, 245, 422
HinfI	GANTC	4 cut(s)	100, 238, 340, 425
HpaII	CCGG	1 cut(s)	134
Hpy166II	GTNNAC	2 cut(s)	82, 177
Hpy188I	TCNGA	2 cut(s)	22, 396
Hpy8I	GTNNAC	2 cut(s)	82, 177
HpyCH4III	ACNGT	3 cut(s)	231, 325, 375
HpyCH4V	TGCA	7 cut(s)	8, 64, 152, 167, 177, 199, 221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	86
Hsp92II	CATG	4 cut(s)	61, 221, 245, 422
LguI	GCTCTTC	1 cut(s)	123
LpnPI	CCDG	4 cut(s)	50, 147, 323, 363
Lsp1109I	GCAGC	2 cut(s)	18, 48
LweI	GCATC	1 cut(s)	161
MaeI	CTAG	2 cut(s)	12, 183
MaeIII	GTNAC	2 cut(s)	244, 402
MboII	GAAGA	6 cut(s)	134, 137, 140, 331, 349, 409
MhlI	GDGCHC	1 cut(s)	179
MluCI	AATT	1 cut(s)	354
MlyI	GAGTC	3 cut(s)	247, 334, 419
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	5 cut(s)	55, 89, 187, 298, 393
MseI	TTAA	2 cut(s)	357, 380
MspI	CCGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	1 cut(s)	149
NlaIII	CATG	4 cut(s)	61, 221, 245, 422
NlaIV	GGNNCC	1 cut(s)	54
NmuCI	GTSAC	2 cut(s)	244, 402
PciSI	GCTCTTC	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	100
PkrI	GCNGC	2 cut(s)	33, 63
PleI	GAGTC	3 cut(s)	246, 334, 419
PpsI	GAGTC	3 cut(s)	246, 334, 419
PpuMI	RGGWCCY	1 cut(s)	52
Psp5II	RGGWCCY	1 cut(s)	52
PspN4I	GGNNCC	1 cut(s)	54
PspPI	GGNCC	2 cut(s)	52, 307
PspPPI	RGGWCCY	1 cut(s)	52
PstI	CTGCAG	1 cut(s)	66
RsaI	GTAC	2 cut(s)	83, 367
RsaNI	GTAC	2 cut(s)	82, 366
SapI	GCTCTTC	1 cut(s)	123
SaqAI	TTAA	2 cut(s)	357, 380
SatI	GCNGC	2 cut(s)	32, 62
Sau96I	GGNCC	2 cut(s)	52, 307
SchI	GAGTC	3 cut(s)	247, 334, 419
SduI	GDGCHC	1 cut(s)	179
SetI	ASST	6 cut(s)	54, 87, 166, 184, 198, 404
SfaNI	GCATC	1 cut(s)	161
SfcI	CTRYAG	1 cut(s)	62
SinI	GGWCC	1 cut(s)	52
SpeI	ACTAGT	1 cut(s)	11
Sse9I	AATT	1 cut(s)	354
SspMI	CTAG	2 cut(s)	12, 183
StyI	CCWWGG	1 cut(s)	332
TaaI	ACNGT	3 cut(s)	231, 325, 375
TaqI	TCGA	1 cut(s)	209
TasI	AATT	1 cut(s)	354
TatI	WGTACW	1 cut(s)	365
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	2 cut(s)	357, 380
Tru9I	TTAA	2 cut(s)	357, 380
TscAI	CASTG	1 cut(s)	234
TseFI	GTSAC	2 cut(s)	244, 402
TseI	GCWGC	2 cut(s)	31, 61
Tsp45I	GTSAC	2 cut(s)	244, 402
TspGWI	ACGGA	1 cut(s)	223
TspRI	CASTG	1 cut(s)	234
VneI	GTGCAC	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	52
XspI	CTAG	2 cut(s)	12, 183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.