RLG00000033650

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0020043
Physical Location & Seq
Reverse (-)
30192587 .. 30193189
603 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033650

Sequence Viewer

Length: 504 bp
ATGAAAAGTACATGTGCTCTGCTTCCACCCCAAGTCCCCAAACTAAGATTTGATTCAGGAGTTCCAGACTTCCTGGTCACTCACCACAACTGCCATGCCACACTCGTCGTCGTCGTTTCATCCAACACCTCTCCGGCACAATCCCAACTCATCCGATCGGCCAAGACCCAGAAGCTTTACGACATAGTTGAGCTCCCAGCACCCTCCGGCCACGACTCTAACGCCGCTGGCTCCCTGGTCACCTACCACAACTGCCACGCCACACTTGTCGTCGTCGTTTCATCCAACACCTCTCCGGCACAATCCCAACTCATCCGATCGGCCAAGACCCAGAAGCTCTACGACATAGTTGAGCTCCCAGCACCTTCCGGCCACGACTCCAACACCGTCGGTTCAGTGTTCGCGCACCTCTCGGCCATCATGCTCGATGCCCGATCATCTCTCTGGTCTGCAATCTCGGCCATGGAGCTCAAACCTACCGCCATGATCGTCGATTCTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 map00940
Pfam Domains
Protein Families
UDPGT

Protein Analysis

168

Amino Acids

17.8

Weight (kDa)

7.82

Isoelectric Point (pI)

59.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020043)

Species Orthologous Gene IDs
rosa_laevigata RLG00000033650
rosa_multiflora Rmu_sc0002354.1_g000054 Rmu_sc0004948.1_g000002 Rmu_sc0012562.1_g000005
rosa_samantha Rh2AG196700 Rh2DG204600
rosa_wichuraiana Rw1G000800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 74
AccII CGCG 1 cut(s) 404
AciI CCGC 2 cut(s) 225, 480
AcoI YGGCCR 6 cut(s) 159, 208, 321, 370, 414, 459
AfaI GTAC 1 cut(s) 10
AflIII ACRYGT 1 cut(s) 11
AjnI CCWGG 2 cut(s) 72, 234
AluBI AGCT 5 cut(s) 175, 193, 337, 355, 469
AluI AGCT 5 cut(s) 175, 193, 337, 355, 469
Alw21I GWGCWC 4 cut(s) 19, 195, 357, 471
AoxI GGCC 6 cut(s) 159, 208, 321, 370, 414, 459
AspLEI GCGC 1 cut(s) 406
AsuHPI GGTGA 2 cut(s) 74, 232
BanII GRGCYC 3 cut(s) 195, 357, 471
Bbv12I GWGCWC 4 cut(s) 19, 195, 357, 471
BccI CCATC 1 cut(s) 425
BciT130I CCWGG 2 cut(s) 74, 236
BfaI CTAG 1 cut(s) 498
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
Bme1390I CCNGG 2 cut(s) 74, 236
BmiI GGNNCC 1 cut(s) 232
BmrFI CCNGG 2 cut(s) 74, 236
BmsI GCATC 1 cut(s) 418
BsaJI CCNNGG 2 cut(s) 234, 462
BseBI CCWGG 2 cut(s) 74, 236
BseDI CCNNGG 2 cut(s) 234, 462
BseGI GGATG 4 cut(s) 119, 150, 281, 312
BseYI CCCAGC 2 cut(s) 196, 358
Bsh1236I CGCG 1 cut(s) 404
Bsh1285I CGRYCG 2 cut(s) 158, 320
BshFI GGCC 6 cut(s) 161, 210, 323, 372, 416, 461
BsiEI CGRYCG 2 cut(s) 158, 320
BsiHKAI GWGCWC 4 cut(s) 19, 195, 357, 471
BsiSI CCGG 4 cut(s) 134, 207, 296, 369
BslFI GGGAC 1 cut(s) 20
BsmFI GGGAC 1 cut(s) 20
BsnI GGCC 6 cut(s) 161, 210, 323, 372, 416, 461
Bsp1286I GDGCHC 4 cut(s) 19, 195, 357, 471
Bsp143I GATC 4 cut(s) 155, 317, 434, 486
Bsp19I CCATGG 1 cut(s) 462
BspACI CCGC 2 cut(s) 225, 480
BspANI GGCC 6 cut(s) 161, 210, 323, 372, 416, 461
BspFNI CGCG 1 cut(s) 404
BspLI GGNNCC 1 cut(s) 232
BssECI CCNNGG 2 cut(s) 234, 462
BssMI GATC 4 cut(s) 155, 317, 434, 486
BssT1I CCWWGG 1 cut(s) 462
Bst2UI CCWGG 2 cut(s) 74, 236
Bst4CI ACNGT 1 cut(s) 388
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 44
BstDSI CCRYGG 1 cut(s) 462
BstEII GGTNACC 1 cut(s) 238
BstF5I GGATG 4 cut(s) 119, 150, 281, 312
BstFNI CGCG 1 cut(s) 404
BstHHI GCGC 1 cut(s) 406
BstKTI GATC 4 cut(s) 158, 320, 437, 489
BstMBI GATC 4 cut(s) 155, 317, 434, 486
BstMCI CGRYCG 2 cut(s) 158, 320
BstMWI GCNNNNNNNGC 1 cut(s) 458
BstNI CCWGG 2 cut(s) 74, 236
BstNSI RCATGY 1 cut(s) 15
BstPI GGTNACC 1 cut(s) 238
BstSCI CCNGG 2 cut(s) 72, 234
BstUI CGCG 1 cut(s) 404
BsuRI GGCC 6 cut(s) 161, 210, 323, 372, 416, 461
BtgI CCRYGG 1 cut(s) 462
BtsCI GGATG 4 cut(s) 119, 150, 281, 312
BtsIMutI CAGTG 1 cut(s) 402
Cac8I GCNNGC 1 cut(s) 229
CfoI GCGC 1 cut(s) 406
Csp6I GTAC 1 cut(s) 9
CviAII CATG 5 cut(s) 12, 95, 421, 463, 484
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 1 cut(s) 44
DpnI GATC 4 cut(s) 157, 319, 436, 488
DpnII GATC 4 cut(s) 155, 317, 434, 486
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
EaeI YGGCCR 6 cut(s) 159, 208, 321, 370, 414, 459
Ecl136II GAGCTC 3 cut(s) 193, 355, 469
Eco130I CCWWGG 1 cut(s) 462
Eco24I GRGCYC 3 cut(s) 195, 357, 471
Eco53kI GAGCTC 3 cut(s) 193, 355, 469
Eco91I GGTNACC 1 cut(s) 238
EcoICRI GAGCTC 3 cut(s) 193, 355, 469
EcoO65I GGTNACC 1 cut(s) 238
EcoRII CCWGG 2 cut(s) 72, 234
EcoT14I CCWWGG 1 cut(s) 462
EcoT38I GRGCYC 3 cut(s) 195, 357, 471
ErhI CCWWGG 1 cut(s) 462
FaeI CATG 5 cut(s) 15, 98, 424, 466, 487
FaiI YATR 7 cut(s) 13, 96, 185, 347, 422, 464, 485
FaqI GGGAC 1 cut(s) 20
FatI CATG 5 cut(s) 11, 94, 420, 462, 483
Fnu4HI GCNGC 1 cut(s) 225
FokI GGATG 4 cut(s) 106, 137, 268, 299
FriOI GRGCYC 3 cut(s) 195, 357, 471
Fsp4HI GCNGC 1 cut(s) 225
FspBI CTAG 1 cut(s) 498
GlaI GCGC 1 cut(s) 405
GluI GCNGC 1 cut(s) 225
GsaI CCCAGC 2 cut(s) 200, 362
HaeIII GGCC 6 cut(s) 161, 210, 323, 372, 416, 461
HapII CCGG 4 cut(s) 134, 207, 296, 369
HhaI GCGC 1 cut(s) 406
Hin1II CATG 5 cut(s) 15, 98, 424, 466, 487
Hin6I GCGC 1 cut(s) 404
HinP1I GCGC 1 cut(s) 404
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 4 cut(s) 53, 215, 377, 494
HpaII CCGG 4 cut(s) 134, 207, 296, 369
HphI GGTGA 2 cut(s) 74, 232
Hpy188I TCNGA 2 cut(s) 155, 317
Hpy188III TCNNGA 3 cut(s) 57, 65, 498
Hpy99I CGWCG 7 cut(s) 110, 113, 116, 275, 278, 392, 494
HpyAV CCTTC 1 cut(s) 375
HpyCH4III ACNGT 1 cut(s) 388
HpyCH4V TGCA 1 cut(s) 452
HpyF10VI GCNNNNNNNGC 1 cut(s) 458
HpyF3I CTNAG 1 cut(s) 44
Hsp92II CATG 5 cut(s) 15, 98, 424, 466, 487
HspAI GCGC 1 cut(s) 404
Kzo9I GATC 4 cut(s) 155, 317, 434, 486
LmnI GCTCC 4 cut(s) 198, 236, 360, 466
LweI GCATC 1 cut(s) 418
MaeI CTAG 1 cut(s) 498
MaeIII GTNAC 2 cut(s) 76, 238
MalI GATC 4 cut(s) 157, 319, 436, 488
MboI GATC 4 cut(s) 155, 317, 434, 486
MhlI GDGCHC 4 cut(s) 19, 195, 357, 471
MlyI GAGTC 2 cut(s) 209, 371
MmeI TCCRAC 3 cut(s) 147, 309, 405
MnlI CCTC 4 cut(s) 139, 214, 301, 419
MspA1I CMGCKG 1 cut(s) 227
MspI CCGG 4 cut(s) 134, 207, 296, 369
MspR9I CCNGG 2 cut(s) 74, 236
MvaI CCWGG 2 cut(s) 74, 236
MvnI CGCG 1 cut(s) 404
MwoI GCNNNNNNNGC 1 cut(s) 458
NcoI CCATGG 1 cut(s) 462
NdeII GATC 4 cut(s) 155, 317, 434, 486
NlaIII CATG 5 cut(s) 15, 98, 424, 466, 487
NlaIV GGNNCC 1 cut(s) 232
NmeAIII GCCGAG 2 cut(s) 392, 437
NmuCI GTSAC 2 cut(s) 76, 238
NspI RCATGY 1 cut(s) 15
PciI ACATGT 1 cut(s) 11
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PfeI GAWTC 2 cut(s) 53, 494
PkrI GCNGC 1 cut(s) 226
Ple19I CGATCG 2 cut(s) 158, 320
PleI GAGTC 2 cut(s) 209, 371
PpsI GAGTC 2 cut(s) 209, 371
PscI ACATGT 1 cut(s) 11
Psp124BI GAGCTC 3 cut(s) 195, 357, 471
Psp6I CCWGG 2 cut(s) 72, 234
PspEI GGTNACC 1 cut(s) 238
PspFI CCCAGC 2 cut(s) 196, 358
PspGI CCWGG 2 cut(s) 72, 234
PspN4I GGNNCC 1 cut(s) 232
PvuI CGATCG 2 cut(s) 158, 320
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
SacI GAGCTC 3 cut(s) 195, 357, 471
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 4 cut(s) 155, 317, 434, 486
SchI GAGTC 2 cut(s) 209, 371
ScrFI CCNGG 2 cut(s) 74, 236
SduI GDGCHC 4 cut(s) 19, 195, 357, 471
SfaNI GCATC 1 cut(s) 418
SsiI CCGC 2 cut(s) 225, 480
SspMI CTAG 1 cut(s) 498
SstI GAGCTC 3 cut(s) 195, 357, 471
StyD4I CCNGG 2 cut(s) 72, 234
StyI CCWWGG 1 cut(s) 462
TaaI ACNGT 1 cut(s) 388
TaqI TCGA 2 cut(s) 426, 492
TatI WGTACW 1 cut(s) 8
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 2 cut(s) 53, 494
TscAI CASTG 1 cut(s) 402
TseFI GTSAC 2 cut(s) 76, 238
Tsp45I GTSAC 2 cut(s) 76, 238
TspDTI ATGAA 3 cut(s) 17, 108, 270
TspRI CASTG 1 cut(s) 402
XbaI TCTAGA 1 cut(s) 497
XceI RCATGY 1 cut(s) 15
XspI CTAG 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.