Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0020043

Physical Location & Seq

Genomic Coordinates Forward (+)

19058672 .. 19059034

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG204600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCGGAGATGAGCTCAGAAGCACTTGAGTTGCTAGTCCCAAGCCCTGGCATGGGCCACCTCATCCCCTTAATGGAGCTCGATCACCAGCTCCCTGGTCATCCACCACAATTGCCACGCCACACTCGTCGTCGTCGTTTCATCCAACACCTCTCCGGCACAATCCCAACTCATCCGATCGGCCAAGACCAGAAGCTCTACGACATAGTTGAGCTCCCAACACCCTCCGGCCACGATTCCAACGCCGCCGGTTCAGTGTTCACGCACCTCTCGGCCATCATACTCGATGCCCGATCATCTCTCCGGTCTGCAATCTCAGCCATGGAGCTCAAACCCGCCGCCATGATCGTCAATTCTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

120

Amino Acids

13.11

Weight (kDa)

6.7

Isoelectric Point (pI)

64.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020043)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000033650
rosa_multiflora	Rmu_sc0002354.1_g000054 Rmu_sc0004948.1_g000002 Rmu_sc0012562.1_g000005
rosa_samantha	Rh2AG196700 Rh2DG204600
rosa_wichuraiana	Rw1G000800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	47
AciI	CCGC	4 cut(s)	5, 246, 336, 339
AcoI	YGGCCR	3 cut(s)	181, 229, 273
AfiI	CCNNNNNNNGG	4 cut(s)	47, 52, 53, 73
AjnI	CCWGG	2 cut(s)	46, 94
AluBI	AGCT	6 cut(s)	15, 79, 91, 196, 214, 328
AluI	AGCT	6 cut(s)	15, 79, 91, 196, 214, 328
Alw21I	GWGCWC	4 cut(s)	17, 81, 216, 330
AoxI	GGCC	4 cut(s)	55, 181, 229, 273
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	77
BanII	GRGCYC	4 cut(s)	17, 81, 216, 330
Bbv12I	GWGCWC	4 cut(s)	17, 81, 216, 330
BccI	CCATC	1 cut(s)	284
BciT130I	CCWGG	2 cut(s)	48, 96
BfaI	CTAG	2 cut(s)	35, 357
BisI	GCNGC	2 cut(s)	246, 339
BlsI	GCNGC	2 cut(s)	247, 340
Bme1390I	CCNGG	2 cut(s)	48, 96
BmgT120I	GGNCC	1 cut(s)	55
BmrFI	CCNGG	2 cut(s)	48, 96
BmsI	GCATC	1 cut(s)	277
BplI	GAGNNNNNCTC	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	47
BsaJI	CCNNGG	3 cut(s)	46, 94, 321
BsaWI	WCCGGW	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	4 cut(s)	47, 52, 53, 73
Bse118I	RCCGGY	1 cut(s)	248
BseBI	CCWGG	2 cut(s)	48, 96
BseDI	CCNNGG	3 cut(s)	46, 94, 321
BseGI	GGATG	4 cut(s)	63, 100, 141, 172
BseLI	CCNNNNNNNGG	4 cut(s)	47, 52, 53, 73
BseMII	CTCAG	2 cut(s)	30, 330
Bsh1285I	CGRYCG	1 cut(s)	180
BshFI	GGCC	4 cut(s)	57, 183, 231, 275
BsiEI	CGRYCG	1 cut(s)	180
BsiHKAI	GWGCWC	4 cut(s)	17, 81, 216, 330
BsiSI	CCGG	4 cut(s)	156, 228, 249, 304
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	4 cut(s)	47, 52, 53, 73
BsmFI	GGGAC	1 cut(s)	23
BsnI	GGCC	4 cut(s)	57, 183, 231, 275
Bsp1286I	GDGCHC	4 cut(s)	17, 81, 216, 330
Bsp143I	GATC	4 cut(s)	82, 177, 293, 345
Bsp19I	CCATGG	1 cut(s)	321
BspACI	CCGC	4 cut(s)	5, 246, 336, 339
BspANI	GGCC	4 cut(s)	57, 183, 231, 275
BspCNI	CTCAG	2 cut(s)	29, 329
BsrFI	RCCGGY	1 cut(s)	248
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	3 cut(s)	46, 94, 321
BssMI	GATC	4 cut(s)	82, 177, 293, 345
BssT1I	CCWWGG	1 cut(s)	321
Bst2UI	CCWGG	2 cut(s)	48, 96
BstDEI	CTNAG	2 cut(s)	16, 316
BstDSI	CCRYGG	1 cut(s)	321
BstF5I	GGATG	4 cut(s)	63, 100, 141, 172
BstKTI	GATC	4 cut(s)	85, 180, 296, 348
BstMBI	GATC	4 cut(s)	82, 177, 293, 345
BstMCI	CGRYCG	1 cut(s)	180
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstNI	CCWGG	2 cut(s)	48, 96
BstSCI	CCNGG	2 cut(s)	46, 94
BstXI	CCANNNNNNTGG	1 cut(s)	95
BsuRI	GGCC	4 cut(s)	57, 183, 231, 275
BtgI	CCRYGG	1 cut(s)	321
BtsCI	GGATG	4 cut(s)	63, 100, 141, 172
BtsIMutI	CAGTG	1 cut(s)	261
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	55
CspCI	CAANNNNNGTGG	2 cut(s)	93, 128
CviAII	CATG	3 cut(s)	52, 322, 343
DdeI	CTNAG	2 cut(s)	16, 316
DpnI	GATC	4 cut(s)	84, 179, 295, 347
DpnII	GATC	4 cut(s)	82, 177, 293, 345
EaeI	YGGCCR	3 cut(s)	181, 229, 273
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	4 cut(s)	15, 79, 214, 328
Eco130I	CCWWGG	1 cut(s)	321
Eco24I	GRGCYC	4 cut(s)	17, 81, 216, 330
Eco53kI	GAGCTC	4 cut(s)	15, 79, 214, 328
EcoICRI	GAGCTC	4 cut(s)	15, 79, 214, 328
EcoRII	CCWGG	2 cut(s)	46, 94
EcoT14I	CCWWGG	1 cut(s)	321
EcoT38I	GRGCYC	4 cut(s)	17, 81, 216, 330
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	3 cut(s)	55, 325, 346
FaiI	YATR	5 cut(s)	53, 206, 281, 323, 344
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	3 cut(s)	51, 321, 342
FauI	CCCGC	1 cut(s)	343
Fnu4HI	GCNGC	2 cut(s)	246, 339
FokI	GGATG	4 cut(s)	50, 87, 128, 159
FriOI	GRGCYC	4 cut(s)	17, 81, 216, 330
Fsp4HI	GCNGC	2 cut(s)	246, 339
FspBI	CTAG	2 cut(s)	35, 357
GluI	GCNGC	2 cut(s)	246, 339
HaeIII	GGCC	4 cut(s)	57, 183, 231, 275
HapII	CCGG	4 cut(s)	156, 228, 249, 304
Hin1II	CATG	3 cut(s)	55, 325, 346
HinfI	GANTC	1 cut(s)	236
HpaII	CCGG	4 cut(s)	156, 228, 249, 304
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188I	TCNGA	2 cut(s)	19, 177
Hpy188III	TCNNGA	1 cut(s)	357
Hpy8I	GTNNAC	1 cut(s)	261
Hpy99I	CGWCG	3 cut(s)	132, 135, 138
HpyCH4V	TGCA	1 cut(s)	311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	2 cut(s)	16, 316
Hsp92II	CATG	3 cut(s)	55, 325, 346
Kzo9I	GATC	4 cut(s)	82, 177, 293, 345
LmnI	GCTCC	4 cut(s)	76, 96, 219, 325
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	2 cut(s)	35, 357
MalI	GATC	4 cut(s)	84, 179, 295, 347
MboI	GATC	4 cut(s)	82, 177, 293, 345
MfeI	CAATTG	1 cut(s)	110
MhlI	GDGCHC	4 cut(s)	17, 81, 216, 330
MluCI	AATT	2 cut(s)	110, 352
MmeI	TCCRAC	2 cut(s)	169, 264
MnlI	CCTC	4 cut(s)	71, 161, 235, 278
MseI	TTAA	1 cut(s)	71
MspI	CCGG	4 cut(s)	156, 228, 249, 304
MspR9I	CCNGG	2 cut(s)	48, 96
MunI	CAATTG	1 cut(s)	110
MvaI	CCWGG	2 cut(s)	48, 96
MwoI	GCNNNNNNNGC	1 cut(s)	317
NcoI	CCATGG	1 cut(s)	321
NdeII	GATC	4 cut(s)	82, 177, 293, 345
NlaIII	CATG	3 cut(s)	55, 325, 346
NmeAIII	GCCGAG	1 cut(s)	251
PcsI	WCGNNNNNNNCGW	2 cut(s)	124, 133
PfeI	GAWTC	1 cut(s)	236
PflMI	CCANNNNNTGG	1 cut(s)	47
PkrI	GCNGC	2 cut(s)	247, 340
Ple19I	CGATCG	1 cut(s)	180
Psp124BI	GAGCTC	4 cut(s)	17, 81, 216, 330
Psp6I	CCWGG	2 cut(s)	46, 94
PspGI	CCWGG	2 cut(s)	46, 94
PspPI	GGNCC	1 cut(s)	55
PvuI	CGATCG	1 cut(s)	180
SacI	GAGCTC	4 cut(s)	17, 81, 216, 330
SaqAI	TTAA	1 cut(s)	71
SatI	GCNGC	2 cut(s)	246, 339
Sau3AI	GATC	4 cut(s)	82, 177, 293, 345
Sau96I	GGNCC	1 cut(s)	55
ScrFI	CCNGG	2 cut(s)	48, 96
SduI	GDGCHC	4 cut(s)	17, 81, 216, 330
SetI	ASST	9 cut(s)	17, 63, 81, 93, 153, 198, 216, 270, 330
SfaNI	GCATC	1 cut(s)	277
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	2 cut(s)	110, 352
SsiI	CCGC	4 cut(s)	5, 246, 336, 339
SspMI	CTAG	2 cut(s)	35, 357
SstI	GAGCTC	4 cut(s)	17, 81, 216, 330
StyD4I	CCNGG	2 cut(s)	46, 94
StyI	CCWWGG	1 cut(s)	321
TaqI	TCGA	2 cut(s)	81, 285
TasI	AATT	2 cut(s)	110, 352
TauI	GCSGC	2 cut(s)	248, 341
TfiI	GAWTC	1 cut(s)	236
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TscAI	CASTG	1 cut(s)	261
TspDTI	ATGAA	1 cut(s)	130
TspRI	CASTG	1 cut(s)	261
Van91I	CCANNNNNTGG	1 cut(s)	47
XbaI	TCTAGA	1 cut(s)	356
XspI	CTAG	2 cut(s)	35, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.