Rmu_sc0012562.1_g000005

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012562.1
OG0020043
Physical Location & Seq
Forward (+)
9668 .. 10993
1326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012562.1_g000005.1.cds

Sequence Viewer

Length: 441 bp
atggtgcaaatctccaaaaccaatgggagagagaagtcatcctccaccttactgtgcgcgaccggtgaccggattccggcgaccggtgaccggattccggcgaccgttgaccggattccagaaaccggtaaccggaatccggcgaccggtaaccggaatccggactccggctattattgccccccaacgcacgtacgcccactcgtcgtcgtcgtttcatccaacacctctcctgcacaatcccaactcatccgatcgcccaagacccagaagctctacgacatagttgagctcccagcaccctccggccacgactccaacgccgccggttcagtgttcacgcacctctcggccatcatgttcgatgcccgatcatctctctggtctgcaatctcggcaatggagctcaaacccaccgccatgatcgtcgattctagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 map00940
Pfam Domains
Protein Families
UDPGT

Protein Analysis

146

Amino Acids

15.62

Weight (kDa)

9.1

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020043)

Species Orthologous Gene IDs
rosa_laevigata RLG00000033650
rosa_multiflora Rmu_sc0002354.1_g000054 Rmu_sc0004948.1_g000002 Rmu_sc0012562.1_g000005
rosa_samantha Rh2AG196700 Rh2DG204600
rosa_wichuraiana Rw1G000800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 59
AccIII TCCGGA 1 cut(s) 160
AciI CCGC 2 cut(s) 324, 417
AcoI YGGCCR 2 cut(s) 307, 351
AfaI GTAC 1 cut(s) 195
AgeI ACCGGT 4 cut(s) 62, 83, 125, 146
AluBI AGCT 3 cut(s) 274, 292, 406
AluI AGCT 3 cut(s) 274, 292, 406
Alw21I GWGCWC 2 cut(s) 294, 408
Aor13HI TCCGGA 1 cut(s) 160
AoxI GGCC 2 cut(s) 307, 351
AsiGI ACCGGT 4 cut(s) 62, 83, 125, 146
AspLEI GCGC 1 cut(s) 59
AsuHPI GGTGA 2 cut(s) 77, 98
BanII GRGCYC 2 cut(s) 294, 408
Bbv12I GWGCWC 2 cut(s) 294, 408
BccI CCATC 1 cut(s) 362
BfaI CTAG 1 cut(s) 435
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
BmsI GCATC 1 cut(s) 355
BsaAI YACGTR 1 cut(s) 193
Bse118I RCCGGY 5 cut(s) 62, 83, 125, 146, 326
Bse3DI GCAATG 1 cut(s) 405
BseAI TCCGGA 1 cut(s) 160
BseGI GGATG 3 cut(s) 38, 218, 249
BseMI GCAATG 1 cut(s) 405
BseYI CCCAGC 1 cut(s) 295
BsgI GTGCAG 1 cut(s) 219
Bsh1236I CGCG 1 cut(s) 59
Bsh1285I CGRYCG 5 cut(s) 63, 84, 105, 147, 257
BshFI GGCC 2 cut(s) 309, 353
BshTI ACCGGT 4 cut(s) 62, 83, 125, 146
BsiEI CGRYCG 5 cut(s) 63, 84, 105, 147, 257
BsiHKAI GWGCWC 2 cut(s) 294, 408
BsiWI CGTACG 1 cut(s) 193
BsnI GGCC 2 cut(s) 309, 353
Bsp1286I GDGCHC 2 cut(s) 294, 408
Bsp13I TCCGGA 1 cut(s) 160
Bsp143I GATC 3 cut(s) 254, 371, 423
BspACI CCGC 2 cut(s) 324, 417
BspANI GGCC 2 cut(s) 309, 353
BspEI TCCGGA 1 cut(s) 160
BspFNI CGCG 1 cut(s) 59
BsrDI GCAATG 1 cut(s) 405
BsrFI RCCGGY 5 cut(s) 62, 83, 125, 146, 326
BssAI RCCGGY 5 cut(s) 62, 83, 125, 146, 326
BssMI GATC 3 cut(s) 254, 371, 423
Bst4CI ACNGT 2 cut(s) 54, 106
BstBAI YACGTR 1 cut(s) 193
BstEII GGTNACC 4 cut(s) 65, 86, 128, 149
BstF5I GGATG 3 cut(s) 38, 218, 249
BstFNI CGCG 1 cut(s) 59
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 3 cut(s) 257, 374, 426
BstMBI GATC 3 cut(s) 254, 371, 423
BstMCI CGRYCG 5 cut(s) 63, 84, 105, 147, 257
BstMWI GCNNNNNNNGC 2 cut(s) 177, 395
BstPI GGTNACC 4 cut(s) 65, 86, 128, 149
BstUI CGCG 1 cut(s) 59
BsuRI GGCC 2 cut(s) 309, 353
BtsCI GGATG 3 cut(s) 38, 218, 249
BtsIMutI CAGTG 1 cut(s) 339
CfoI GCGC 1 cut(s) 59
Cfr10I RCCGGY 5 cut(s) 62, 83, 125, 146, 326
Csp6I GTAC 1 cut(s) 194
CspAI ACCGGT 4 cut(s) 62, 83, 125, 146
CviAII CATG 2 cut(s) 358, 421
CviJI RGCY 6 cut(s) 171, 274, 292, 309, 353, 406
CviKI_1 RGCY 6 cut(s) 171, 274, 292, 309, 353, 406
CviQI GTAC 1 cut(s) 194
DpnI GATC 3 cut(s) 256, 373, 425
DpnII GATC 3 cut(s) 254, 371, 423
EaeI YGGCCR 2 cut(s) 307, 351
Ecl136II GAGCTC 2 cut(s) 292, 406
Eco24I GRGCYC 2 cut(s) 294, 408
Eco53kI GAGCTC 2 cut(s) 292, 406
Eco91I GGTNACC 4 cut(s) 65, 86, 128, 149
EcoICRI GAGCTC 2 cut(s) 292, 406
EcoO65I GGTNACC 4 cut(s) 65, 86, 128, 149
EcoT38I GRGCYC 2 cut(s) 294, 408
FaeI CATG 2 cut(s) 361, 424
FaiI YATR 3 cut(s) 284, 359, 422
FatI CATG 2 cut(s) 357, 420
Fnu4HI GCNGC 1 cut(s) 324
FokI GGATG 3 cut(s) 25, 205, 236
FriOI GRGCYC 2 cut(s) 294, 408
Fsp4HI GCNGC 1 cut(s) 324
FspBI CTAG 1 cut(s) 435
GlaI GCGC 1 cut(s) 58
GluI GCNGC 1 cut(s) 324
GsaI CCCAGC 1 cut(s) 299
HaeIII GGCC 2 cut(s) 309, 353
HhaI GCGC 1 cut(s) 59
Hin1II CATG 2 cut(s) 361, 424
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 8 cut(s) 73, 94, 115, 136, 157, 164, 314, 431
HphI GGTGA 2 cut(s) 77, 98
Hpy166II GTNNAC 2 cut(s) 109, 339
Hpy188I TCNGA 1 cut(s) 254
Hpy188III TCNNGA 3 cut(s) 119, 161, 435
Hpy8I GTNNAC 2 cut(s) 109, 339
Hpy99I CGWCG 4 cut(s) 209, 212, 215, 431
HpyCH4III ACNGT 2 cut(s) 54, 106
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 3 cut(s) 7, 236, 389
HpyF10VI GCNNNNNNNGC 2 cut(s) 177, 395
HpySE526I ACGT 1 cut(s) 192
Hsp92II CATG 2 cut(s) 361, 424
HspAI GCGC 1 cut(s) 57
Kpn2I TCCGGA 1 cut(s) 160
Kzo9I GATC 3 cut(s) 254, 371, 423
LmnI GCTCC 2 cut(s) 297, 403
LweI GCATC 1 cut(s) 355
MaeI CTAG 1 cut(s) 435
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 4 cut(s) 65, 86, 128, 149
MalI GATC 3 cut(s) 256, 373, 425
MboI GATC 3 cut(s) 254, 371, 423
MhlI GDGCHC 2 cut(s) 294, 408
MlyI GAGTC 2 cut(s) 158, 308
MmeI TCCRAC 2 cut(s) 246, 342
MnlI CCTC 4 cut(s) 52, 238, 313, 356
MroI TCCGGA 1 cut(s) 160
MslI CAYNNNNRTG 1 cut(s) 419
MvnI CGCG 1 cut(s) 59
MwoI GCNNNNNNNGC 2 cut(s) 177, 395
NdeII GATC 3 cut(s) 254, 371, 423
NlaIII CATG 2 cut(s) 361, 424
NmeAIII GCCGAG 2 cut(s) 329, 374
NmuCI GTSAC 2 cut(s) 65, 86
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PfeI GAWTC 6 cut(s) 73, 94, 115, 136, 157, 431
Pfl23II CGTACG 1 cut(s) 193
PinAI ACCGGT 4 cut(s) 62, 83, 125, 146
PkrI GCNGC 1 cut(s) 325
Ple19I CGATCG 1 cut(s) 257
PleI GAGTC 2 cut(s) 158, 308
PpsI GAGTC 2 cut(s) 158, 308
Ppu21I YACGTR 1 cut(s) 193
Psp124BI GAGCTC 2 cut(s) 294, 408
PspEI GGTNACC 4 cut(s) 65, 86, 128, 149
PspFI CCCAGC 1 cut(s) 295
PspLI CGTACG 1 cut(s) 193
PvuI CGATCG 1 cut(s) 257
RsaI GTAC 1 cut(s) 195
RsaNI GTAC 1 cut(s) 194
RseI CAYNNNNRTG 1 cut(s) 419
SacI GAGCTC 2 cut(s) 294, 408
SatI GCNGC 1 cut(s) 324
Sau3AI GATC 3 cut(s) 254, 371, 423
SchI GAGTC 2 cut(s) 158, 308
SduI GDGCHC 2 cut(s) 294, 408
SetI ASST 7 cut(s) 50, 195, 230, 276, 294, 348, 408
SfaNI GCATC 1 cut(s) 355
SmiMI CAYNNNNRTG 1 cut(s) 419
SsiI CCGC 2 cut(s) 324, 417
SspMI CTAG 1 cut(s) 435
SstI GAGCTC 2 cut(s) 294, 408
TaaI ACNGT 2 cut(s) 54, 106
TaiI ACGT 1 cut(s) 195
TaqI TCGA 2 cut(s) 363, 429
TauI GCSGC 1 cut(s) 326
TfiI GAWTC 6 cut(s) 73, 94, 115, 136, 157, 431
TscAI CASTG 1 cut(s) 339
TseFI GTSAC 2 cut(s) 65, 86
Tsp45I GTSAC 2 cut(s) 65, 86
TspDTI ATGAA 1 cut(s) 207
TspRI CASTG 1 cut(s) 339
XbaI TCTAGA 1 cut(s) 434
XspI CTAG 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.