RLG00000033868

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0023000
Physical Location & Seq
Forward (+)
33546114 .. 33553143
7030 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033868

Sequence Viewer

Length: 1038 bp
ATGTGCTTGAGGGCGACTGAGTTAGCTGGATTGGATACTAGAGAGCAATACCTTCCGCATTGTGTGACAAGGCAATTTGGATATGATCAAGACTTTCCATCTTCTGTTGCTCGGTCTGGTCACAGTTCTGATGAACCATGTGTAGAAGTAAATTCTAATGGATCCCAGAAAGATTGCATTGAGGAAATGAAGAATGTGAAATTGTATATTCCATCCAGGATGTCAAAGGCAGATATTAGCACACGATACTTCAAGTGGTCGAAGGAATCTGTGTCAGTTCTCAAAAACAAAAGCGAGCCTACTAGGCCAAAATTAAAGAAAGCAAAGTGCATGGAAGGATCACTTCCGAGAGCTAAACATGTCCCCATACATCATGGTTCTGCCCTAAAGAAAGTTGTAGAGGGTTCTAAGAGAGGGGAAGGGGAGGCCAAGAGTAGAACTCTTCAACTATTAGGAACTTCTGTCTTCTGTAGATACTTTATTGCTGATGAGGCAGCCATTGCCACAGAGGCGGAGGTGGTCGAGGAGGTGGAGGGCTTGGTCGACATTGCGGTGGCAGGTGCAGAAGAAGAAGATTGCGAGGACCTGATTGGAGGTGGGAGAAGAAAACGAAGGATCAGTGCGATCAAGTTTGTCGACGGAGCCGGAGAAGAGAGGTTAGACGAGGCGGCGTCGGAGTCGGTGGTTTCGAGATTCTTAAAGAAAACGCAGAAGCACAAAAAGAATCGAGGATTCATGGACGGTGGTGGCTATGACGGTCACTTGCTTCTTCCAGGCCAAAGGTTTTGCCCTAAACCCAAGCTGAACGGCAAGGAGGTGCCCAGGAAAGACGACCTTATCTGCGAGTTGGATCTTTACTGGCCAACACCATTAGAAGTTGAACCAGTTGCGTTGCAATCAGATGAGAATAGGGGACTCCAACAATTTGAGGCTGATCAAGGAGCGGCTGAACTAGAAAAGTGGATTGAAGCTGAATTTGAGGCTCAACCTCAACTAGGAGAAGAAAATCTTGAGCAGTACGTGAAGTTGATGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

346

Amino Acids

38.57

Weight (kDa)

5.61

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 1 - 86 1.3e-13 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023000)

Species Orthologous Gene IDs
rosa_laevigata RLG00000033868
rosa_roxburghii Rroxscaffold_1G00042280
rosa_samantha Rh5AG261600 Rh5CG298800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 548
Acc36I ACCTGC 1 cut(s) 548
AccB1I GGYRCC 1 cut(s) 817
AccBSI CCGCTC 1 cut(s) 944
AccI GTMKAC 2 cut(s) 543, 636
AciI CCGC 5 cut(s) 56, 512, 551, 668, 944
AclWI GGATC 5 cut(s) 156, 169, 346, 623, 858
AcoI YGGCCR 1 cut(s) 860
AcsI RAATTY 2 cut(s) 151, 974
AcyI GRCGYC 1 cut(s) 671
AfaI GTAC 1 cut(s) 1019
AfiI CCNNNNNNNGG 1 cut(s) 995
AflIII ACRYGT 1 cut(s) 358
AgsI TTSAA 4 cut(s) 253, 446, 881, 968
AjnI CCWGG 3 cut(s) 215, 772, 821
AluBI AGCT 4 cut(s) 26, 353, 802, 971
AluI AGCT 4 cut(s) 26, 353, 802, 971
AlwI GGATC 5 cut(s) 156, 169, 346, 623, 858
AoxI GGCC 4 cut(s) 305, 426, 775, 860
ApeKI GCWGC 1 cut(s) 494
ApoI RAATTY 2 cut(s) 151, 974
AspS9I GGNCC 1 cut(s) 583
AvaII GGWCC 1 cut(s) 583
BaeGI GKGCMC 1 cut(s) 822
BalI TGGCCA 1 cut(s) 862
BamHI GGATCC 1 cut(s) 161
BanI GGYRCC 1 cut(s) 817
BbsI GAAGAC 1 cut(s) 457
BbvI GCAGC 1 cut(s) 506
BccI CCATC 2 cut(s) 106, 220
BceAI ACGGC 1 cut(s) 823
BciT130I CCWGG 3 cut(s) 217, 774, 823
BciVI GTATCC 1 cut(s) 28
BclI TGATCA 2 cut(s) 85, 934
BfaI CTAG 4 cut(s) 39, 303, 953, 995
BfmI CTRYAG 1 cut(s) 469
BfuAI ACCTGC 1 cut(s) 548
BfuI GTATCC 1 cut(s) 28
BglI GCCNNNNNGGC 2 cut(s) 304, 509
BisI GCNGC 3 cut(s) 495, 669, 945
BlsI GCNGC 3 cut(s) 496, 670, 946
Bme1390I CCNGG 3 cut(s) 217, 774, 823
Bme18I GGWCC 1 cut(s) 583
BmgT120I GGNCC 1 cut(s) 583
BmiI GGNNCC 3 cut(s) 163, 643, 819
BmrFI CCNGG 3 cut(s) 217, 774, 823
BpiI GAAGAC 1 cut(s) 457
BplI GAGNNNNNCTC 2 cut(s) 424, 456
BpuEI CTTGAG 2 cut(s) 28, 1031
BsaAI YACGTR 1 cut(s) 1021
BsaHI GRCGYC 1 cut(s) 671
BsaJI CCNNGG 1 cut(s) 821
Bsc4I CCNNNNNNNGG 1 cut(s) 995
Bse1I ACTGG 2 cut(s) 863, 884
Bse3DI GCAATG 2 cut(s) 498, 546
BseBI CCWGG 3 cut(s) 217, 774, 823
BseDI CCNNGG 1 cut(s) 821
BseGI GGATG 2 cut(s) 212, 225
BseLI CCNNNNNNNGG 1 cut(s) 995
BseMI GCAATG 2 cut(s) 498, 546
BseMII CTCAG 1 cut(s) 9
BseNI ACTGG 2 cut(s) 863, 884
BseRI GAGGAG 1 cut(s) 539
BseSI GKGCMC 1 cut(s) 822
BseXI GCAGC 1 cut(s) 506
BsgI GTGCAG 1 cut(s) 582
BshFI GGCC 4 cut(s) 307, 428, 777, 862
BshNI GGYRCC 1 cut(s) 817
BsiSI CCGG 1 cut(s) 645
BslFI GGGAC 2 cut(s) 347, 927
BslI CCNNNNNNNGG 1 cut(s) 995
BsmFI GGGAC 2 cut(s) 347, 927
BsnI GGCC 4 cut(s) 307, 428, 777, 862
Bsp1286I GDGCHC 1 cut(s) 822
Bsp143I GATC 7 cut(s) 85, 161, 338, 615, 624, 850, 934
BspACI CCGC 5 cut(s) 56, 512, 551, 668, 944
BspANI GGCC 4 cut(s) 307, 428, 777, 862
BspCNI CTCAG 1 cut(s) 10
BspLI GGNNCC 3 cut(s) 163, 643, 819
BspMI ACCTGC 1 cut(s) 548
BspPI GGATC 5 cut(s) 156, 169, 346, 623, 858
BspT107I GGYRCC 1 cut(s) 817
BsrBI CCGCTC 1 cut(s) 944
BsrDI GCAATG 2 cut(s) 498, 546
BsrI ACTGG 2 cut(s) 863, 884
BssECI CCNNGG 1 cut(s) 821
BssMI GATC 7 cut(s) 85, 161, 338, 615, 624, 850, 934
BssNI GRCGYC 1 cut(s) 671
Bst2UI CCWGG 3 cut(s) 217, 774, 823
Bst4CI ACNGT 3 cut(s) 125, 743, 758
Bst6I CTCTTC 2 cut(s) 447, 645
BstACI GRCGYC 1 cut(s) 671
BstAPI GCANNNNNTGC 1 cut(s) 500
BstBAI YACGTR 1 cut(s) 1021
BstC8I GCNNGC 1 cut(s) 296
BstDEI CTNAG 2 cut(s) 18, 408
BstENI CCTNNNNNAGG 1 cut(s) 993
BstF5I GGATG 2 cut(s) 212, 225
BstKTI GATC 7 cut(s) 88, 164, 341, 618, 627, 853, 937
BstMBI GATC 7 cut(s) 85, 161, 338, 615, 624, 850, 934
BstMWI GCNNNNNNNGC 4 cut(s) 304, 491, 500, 509
BstNI CCWGG 3 cut(s) 217, 774, 823
BstNSI RCATGY 1 cut(s) 362
BstSCI CCNGG 3 cut(s) 215, 772, 821
BstSFI CTRYAG 1 cut(s) 469
BstSLI GKGCMC 1 cut(s) 822
BstV1I GCAGC 1 cut(s) 506
BstV2I GAAGAC 1 cut(s) 457
BstX2I RGATCY 2 cut(s) 161, 850
BstYI RGATCY 2 cut(s) 161, 850
BsuI GTATCC 1 cut(s) 28
BsuRI GGCC 4 cut(s) 307, 428, 777, 862
BtsCI GGATG 2 cut(s) 212, 225
BtsIMutI CAGTG 1 cut(s) 625
BveI ACCTGC 1 cut(s) 548
Cac8I GCNNGC 1 cut(s) 296
Cfr13I GGNCC 1 cut(s) 583
CseI GACGC 1 cut(s) 660
Csp6I GTAC 1 cut(s) 1018
CviAII CATG 5 cut(s) 138, 331, 359, 374, 736
CviQI GTAC 1 cut(s) 1018
DdeI CTNAG 2 cut(s) 18, 408
DpnI GATC 7 cut(s) 87, 163, 340, 617, 626, 852, 936
DpnII GATC 7 cut(s) 85, 161, 338, 615, 624, 850, 934
EaeI YGGCCR 1 cut(s) 860
Eam1104I CTCTTC 2 cut(s) 447, 645
EarI CTCTTC 2 cut(s) 447, 645
EciI GGCGGA 1 cut(s) 527
Eco47I GGWCC 1 cut(s) 583
EcoNI CCTNNNNNAGG 1 cut(s) 993
EcoO109I RGGNCCY 1 cut(s) 583
EcoRII CCWGG 3 cut(s) 215, 772, 821
FaeI CATG 5 cut(s) 141, 334, 362, 377, 739
FaiI YATR 9 cut(s) 84, 139, 207, 332, 360, 368, 375, 737, 753
FalI AAGNNNNNCTT 6 cut(s) 327, 359, 819, 851, 993, 1025
FaqI GGGAC 2 cut(s) 347, 927
FatI CATG 5 cut(s) 137, 330, 358, 373, 735
FbaI TGATCA 2 cut(s) 85, 934
FblI GTMKAC 2 cut(s) 543, 636
Fnu4HI GCNGC 3 cut(s) 495, 669, 945
FokI GGATG 2 cut(s) 199, 232
Fsp4HI GCNGC 3 cut(s) 495, 669, 945
FspBI CTAG 4 cut(s) 39, 303, 953, 995
GluI GCNGC 3 cut(s) 495, 669, 945
HaeIII GGCC 4 cut(s) 307, 428, 777, 862
HapII CCGG 1 cut(s) 645
HgaI GACGC 1 cut(s) 660
Hin1I GRCGYC 1 cut(s) 671
Hin1II CATG 5 cut(s) 141, 334, 362, 377, 739
HincII GTYRAC 2 cut(s) 544, 637
HindII GTYRAC 2 cut(s) 544, 637
HinfI GANTC 6 cut(s) 266, 677, 693, 724, 732, 915
HpaII CCGG 1 cut(s) 645
Hpy166II GTNNAC 2 cut(s) 544, 637
Hpy188I TCNGA 4 cut(s) 130, 348, 676, 901
Hpy188III TCNNGA 3 cut(s) 89, 690, 1010
Hpy8I GTNNAC 2 cut(s) 544, 637
Hpy99I CGWCG 2 cut(s) 641, 676
HpyAV CCTTC 5 cut(s) 62, 256, 329, 413, 606
HpyCH4III ACNGT 3 cut(s) 125, 743, 758
HpyCH4IV ACGT 1 cut(s) 1020
HpyCH4V TGCA 4 cut(s) 177, 330, 563, 895
HpyF10VI GCNNNNNNNGC 4 cut(s) 304, 491, 500, 509
HpyF3I CTNAG 2 cut(s) 18, 408
HpySE526I ACGT 1 cut(s) 1020
Hsp92I GRCGYC 1 cut(s) 671
Hsp92II CATG 5 cut(s) 141, 334, 362, 377, 739
Ksp22I TGATCA 2 cut(s) 85, 934
Kzo9I GATC 7 cut(s) 85, 161, 338, 615, 624, 850, 934
LmnI GCTCC 2 cut(s) 641, 941
Lsp1109I GCAGC 1 cut(s) 506
MaeI CTAG 4 cut(s) 39, 303, 953, 995
MaeII ACGT 1 cut(s) 1020
MaeIII GTNAC 3 cut(s) 64, 119, 758
MalI GATC 7 cut(s) 87, 163, 340, 617, 626, 852, 936
MbiI CCGCTC 1 cut(s) 944
MboI GATC 7 cut(s) 85, 161, 338, 615, 624, 850, 934
MflI RGATCY 2 cut(s) 161, 850
MhlI GDGCHC 1 cut(s) 822
MlsI TGGCCA 1 cut(s) 862
MluCI AATT 6 cut(s) 74, 151, 200, 311, 923, 974
MluNI TGGCCA 1 cut(s) 862
MlyI GAGTC 2 cut(s) 686, 909
MmeI TCCRAC 3 cut(s) 654, 828, 943
Mox20I TGGCCA 1 cut(s) 862
MscI TGGCCA 1 cut(s) 862
MseI TTAA 2 cut(s) 314, 698
MslI CAYNNNNRTG 1 cut(s) 551
Msp20I TGGCCA 1 cut(s) 862
MspI CCGG 1 cut(s) 645
MspR9I CCNGG 3 cut(s) 217, 774, 823
MvaI CCWGG 3 cut(s) 217, 774, 823
MwoI GCNNNNNNNGC 4 cut(s) 304, 491, 500, 509
NdeII GATC 7 cut(s) 85, 161, 338, 615, 624, 850, 934
NlaIII CATG 5 cut(s) 141, 334, 362, 377, 739
NlaIV GGNNCC 3 cut(s) 163, 643, 819
NmuCI GTSAC 3 cut(s) 64, 119, 758
NspI RCATGY 1 cut(s) 362
PaqCI CACCTGC 1 cut(s) 548
PciI ACATGT 1 cut(s) 358
PcsI WCGNNNNNNNCGW 1 cut(s) 686
PfeI GAWTC 4 cut(s) 266, 693, 724, 732
PfoI TCCNGGA 1 cut(s) 215
PkrI GCNGC 3 cut(s) 496, 670, 946
PleI GAGTC 2 cut(s) 685, 909
PpsI GAGTC 2 cut(s) 685, 909
Ppu21I YACGTR 1 cut(s) 1021
PpuMI RGGWCCY 1 cut(s) 583
PscI ACATGT 1 cut(s) 358
Psp5II RGGWCCY 1 cut(s) 583
Psp6I CCWGG 3 cut(s) 215, 772, 821
PspGI CCWGG 3 cut(s) 215, 772, 821
PspN4I GGNNCC 3 cut(s) 163, 643, 819
PspPI GGNCC 1 cut(s) 583
PspPPI RGGWCCY 1 cut(s) 583
PsuI RGATCY 2 cut(s) 161, 850
RsaI GTAC 1 cut(s) 1019
RsaNI GTAC 1 cut(s) 1018
RseI CAYNNNNRTG 1 cut(s) 551
SalI GTCGAC 2 cut(s) 542, 635
SaqAI TTAA 2 cut(s) 314, 698
SatI GCNGC 3 cut(s) 495, 669, 945
Sau3AI GATC 7 cut(s) 85, 161, 338, 615, 624, 850, 934
Sau96I GGNCC 1 cut(s) 583
SchI GAGTC 2 cut(s) 686, 909
ScrFI CCNGG 3 cut(s) 217, 774, 823
SduI GDGCHC 1 cut(s) 822
SfcI CTRYAG 1 cut(s) 469
SinI GGWCC 1 cut(s) 583
SmiMI CAYNNNNRTG 1 cut(s) 551
SmlI CTYRAG 2 cut(s) 7, 1010
SmoI CTYRAG 2 cut(s) 7, 1010
Sse9I AATT 6 cut(s) 74, 151, 200, 311, 923, 974
SsiI CCGC 5 cut(s) 56, 512, 551, 668, 944
SspMI CTAG 4 cut(s) 39, 303, 953, 995
StyD4I CCNGG 3 cut(s) 215, 772, 821
TaaI ACNGT 3 cut(s) 125, 743, 758
TaiI ACGT 1 cut(s) 1023
TaqI TCGA 6 cut(s) 260, 522, 543, 636, 689, 727
TaqII GACCGA 1 cut(s) 102
TasI AATT 6 cut(s) 74, 151, 200, 311, 923, 974
TauI GCSGC 2 cut(s) 671, 947
TfiI GAWTC 4 cut(s) 266, 693, 724, 732
Tru1I TTAA 2 cut(s) 314, 698
Tru9I TTAA 2 cut(s) 314, 698
TscAI CASTG 1 cut(s) 625
TseFI GTSAC 3 cut(s) 64, 119, 758
TseI GCWGC 1 cut(s) 494
Tsp45I GTSAC 3 cut(s) 64, 119, 758
TspDTI ATGAA 3 cut(s) 147, 203, 724
TspGWI ACGGA 1 cut(s) 654
TspRI CASTG 1 cut(s) 625
VpaK11BI GGWCC 1 cut(s) 583
XagI CCTNNNNNAGG 1 cut(s) 993
XapI RAATTY 2 cut(s) 151, 974
XceI RCATGY 1 cut(s) 362
XmiI GTMKAC 2 cut(s) 543, 636
XspI CTAG 4 cut(s) 39, 303, 953, 995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.