Rroxscaffold_1G00042280
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0023000
Physical Location & Seq
Forward (+)
60362689 .. 60367397
4709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00042280.1

Sequence Viewer

Length: 756 bp
ATGATGAAACCTTCCGAGTATATGAAGACACTTGAGATCATTCAATTTCTACTGTTGCAGGCTTCTCGTCCTTACAATTCAAACCAGCCATGGGAAGGGGAGGCCAAGAGTAGAACTCTTCAAATATCAGGAACTTCTGTCTTCTGTAGATACTCTATTGCTGACGAGGCAGATCTCTACTTCTTCACTCAAAAGAAGAAGAAGAAGACTGCAAGAGGCTGGCGTATGAGGCGAACTGTTGGGAGTGGTGGTACTTGGAAAGGCCAGAACGCAGCCAAAGAGATATATCTTCTTGATAAGAATCAGCAGCCAACAACTAATCTTCTTGGTTTCAAGAAAACCTATACCTTTAAGAACAAGGGCTCCGGGCATCACGGTCGCTGGATCATGTACGAGTACAAACTTGATGAGTCACAACTCGTGCACAATTTAAACTCTGTTCAAGAAGCAGGACCAACACCATTAGAAGCTGAACCAGTTGTGTTGCAAGTGGATGAGAATAGCGGACTCCAACAATTTGAGGCTGATAAAGAAGCGGCTGAACTAGAAAAGTGGATTGAAGCTGAATTTGAAGCTCAACCACAACTAGGAGAAGAAAATCTTGAGCAGTACGTGAAGATTCGCCAAGATGAAAATCTGGTTCAGAAAATGGCAGACTGGGCCAATTCTATTGTGGAGAAGCTAATGAATGATGAGCAGCCAAATACCATGGAAGTTGGTGACTGGAATGCTGCTTATTTGATTTTGAGCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

251

Amino Acids

28.91

Weight (kDa)

5.33

Isoelectric Point (pI)

34.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 53 - 135 9.9e-14 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023000)

Species Orthologous Gene IDs
rosa_laevigata RLG00000033868
rosa_roxburghii Rroxscaffold_1G00042280
rosa_samantha Rh5AG261600 Rh5CG298800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 504, 536
AclWI GGATC 1 cut(s) 392
AcsI RAATTY 1 cut(s) 566
AfaI GTAC 4 cut(s) 253, 392, 398, 611
AfiI CCNNNNNNNGG 3 cut(s) 91, 95, 587
AgsI TTSAA 7 cut(s) 44, 81, 122, 334, 443, 560, 572
AloI GAACNNNNNNTCC 2 cut(s) 347, 379
AluBI AGCT 4 cut(s) 470, 563, 575, 682
AluI AGCT 4 cut(s) 470, 563, 575, 682
Alw21I GWGCWC 2 cut(s) 426, 752
Alw44I GTGCAC 1 cut(s) 422
AlwI GGATC 1 cut(s) 392
AoxI GGCC 3 cut(s) 102, 262, 660
ApaLI GTGCAC 1 cut(s) 422
ApeKI GCWGC 4 cut(s) 272, 307, 697, 731
ApoI RAATTY 1 cut(s) 566
AspS9I GGNCC 2 cut(s) 452, 660
AsuC2I CCSGG 1 cut(s) 367
AsuHPI GGTGA 1 cut(s) 731
AvaII GGWCC 1 cut(s) 452
BaeGI GKGCMC 1 cut(s) 426
BanII GRGCYC 1 cut(s) 365
BauI CACGAG 1 cut(s) 419
BbsI GAAGAC 3 cut(s) 32, 133, 212
Bbv12I GWGCWC 2 cut(s) 426, 752
BbvI GCAGC 4 cut(s) 284, 319, 709, 718
BcgI CGANNNNNNTGC 4 cut(s) 47, 81, 359, 393
BcnI CCSGG 1 cut(s) 367
BfaI CTAG 2 cut(s) 545, 587
BfmI CTRYAG 1 cut(s) 145
BglII AGATCT 1 cut(s) 172
BisI GCNGC 5 cut(s) 273, 308, 537, 698, 732
BlsI GCNGC 5 cut(s) 274, 309, 538, 699, 733
Bme1390I CCNGG 1 cut(s) 367
Bme18I GGWCC 1 cut(s) 452
BmgT120I GGNCC 2 cut(s) 452, 660
BmiI GGNNCC 1 cut(s) 364
BmrFI CCNGG 1 cut(s) 367
BmrI ACTGGG 1 cut(s) 667
BmsI GCATC 1 cut(s) 379
BmuI ACTGGG 1 cut(s) 667
BpiI GAAGAC 3 cut(s) 32, 133, 212
BplI GAGNNNNNCTC 2 cut(s) 100, 132
BpuEI CTTGAG 2 cut(s) 53, 623
BpuMI CCSGG 1 cut(s) 367
BsaAI YACGTR 1 cut(s) 613
BsaBI GATNNNNATC 2 cut(s) 300, 633
BsaJI CCNNGG 2 cut(s) 89, 708
BsaXI ACNNNNNCTCC 4 cut(s) 235, 265, 347, 377
Bsc4I CCNNNNNNNGG 3 cut(s) 91, 95, 587
Bse1I ACTGG 3 cut(s) 476, 662, 728
Bse8I GATNNNNATC 2 cut(s) 300, 633
BseDI CCNNGG 2 cut(s) 89, 708
BseGI GGATG 1 cut(s) 499
BseJI GATNNNNATC 2 cut(s) 300, 633
BseLI CCNNNNNNNGG 3 cut(s) 91, 95, 587
BseNI ACTGG 3 cut(s) 476, 662, 728
BseSI GKGCMC 1 cut(s) 426
BseXI GCAGC 4 cut(s) 284, 319, 709, 718
Bsh1285I CGRYCG 1 cut(s) 379
BshFI GGCC 3 cut(s) 104, 264, 662
BsiEI CGRYCG 1 cut(s) 379
BsiHKAI GWGCWC 2 cut(s) 426, 752
BsiSI CCGG 1 cut(s) 366
BslI CCNNNNNNNGG 3 cut(s) 91, 95, 587
BsmI GAATGC 1 cut(s) 733
BsnI GGCC 3 cut(s) 104, 264, 662
Bsp1286I GDGCHC 3 cut(s) 365, 426, 752
Bsp143I GATC 3 cut(s) 36, 172, 384
Bsp19I CCATGG 2 cut(s) 89, 708
BspACI CCGC 2 cut(s) 504, 536
BspANI GGCC 3 cut(s) 104, 264, 662
BspLI GGNNCC 1 cut(s) 364
BspPI GGATC 1 cut(s) 392
BsrI ACTGG 3 cut(s) 476, 662, 728
BssECI CCNNGG 2 cut(s) 89, 708
BssMI GATC 3 cut(s) 36, 172, 384
BssSI CACGAG 1 cut(s) 419
BssT1I CCWWGG 2 cut(s) 89, 708
Bst2BI CACGAG 1 cut(s) 419
Bst4CI ACNGT 3 cut(s) 54, 238, 377
Bst6I CTCTTC 1 cut(s) 123
BstBAI YACGTR 1 cut(s) 613
BstC8I GCNNGC 2 cut(s) 60, 221
BstDEI CTNAG 1 cut(s) 753
BstDSI CCRYGG 2 cut(s) 89, 708
BstF5I GGATG 1 cut(s) 499
BstKTI GATC 3 cut(s) 39, 175, 387
BstMBI GATC 3 cut(s) 36, 172, 384
BstMCI CGRYCG 1 cut(s) 379
BstMWI GCNNNNNNNGC 3 cut(s) 167, 229, 659
BstSCI CCNGG 1 cut(s) 365
BstSFI CTRYAG 1 cut(s) 145
BstSLI GKGCMC 1 cut(s) 426
BstV1I GCAGC 4 cut(s) 284, 319, 709, 718
BstV2I GAAGAC 3 cut(s) 32, 133, 212
BstX2I RGATCY 1 cut(s) 172
BstYI RGATCY 1 cut(s) 172
BsuRI GGCC 3 cut(s) 104, 264, 662
BtgI CCRYGG 2 cut(s) 89, 708
BtsCI GGATG 1 cut(s) 499
Cac8I GCNNGC 2 cut(s) 60, 221
Cfr13I GGNCC 2 cut(s) 452, 660
Csp6I GTAC 4 cut(s) 252, 391, 397, 610
CviAII CATG 3 cut(s) 90, 388, 709
CviQI GTAC 4 cut(s) 252, 391, 397, 610
DdeI CTNAG 1 cut(s) 753
DpnI GATC 3 cut(s) 38, 174, 386
DpnII GATC 3 cut(s) 36, 172, 384
DraI TTTAAA 1 cut(s) 432
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco130I CCWWGG 2 cut(s) 89, 708
Eco24I GRGCYC 1 cut(s) 365
Eco47I GGWCC 1 cut(s) 452
EcoT14I CCWWGG 2 cut(s) 89, 708
EcoT38I GRGCYC 1 cut(s) 365
ErhI CCWWGG 2 cut(s) 89, 708
FaeI CATG 3 cut(s) 93, 391, 712
FaiI YATR 8 cut(s) 21, 23, 91, 227, 286, 345, 389, 710
FalI AAGNNNNNCTT 2 cut(s) 585, 617
FatI CATG 3 cut(s) 89, 387, 708
Fnu4HI GCNGC 5 cut(s) 273, 308, 537, 698, 732
FokI GGATG 1 cut(s) 506
FriOI GRGCYC 1 cut(s) 365
Fsp4HI GCNGC 5 cut(s) 273, 308, 537, 698, 732
FspBI CTAG 2 cut(s) 545, 587
GluI GCNGC 5 cut(s) 273, 308, 537, 698, 732
HaeIII GGCC 3 cut(s) 104, 264, 662
HapII CCGG 1 cut(s) 366
Hin1II CATG 3 cut(s) 93, 391, 712
HinfI GANTC 4 cut(s) 301, 410, 507, 619
HpaII CCGG 1 cut(s) 366
HphI GGTGA 1 cut(s) 731
Hpy166II GTNNAC 1 cut(s) 424
Hpy188I TCNGA 2 cut(s) 16, 645
Hpy188III TCNNGA 5 cut(s) 129, 293, 334, 443, 602
Hpy8I GTNNAC 1 cut(s) 424
HpyAV CCTTC 2 cut(s) 21, 89
HpyCH4III ACNGT 3 cut(s) 54, 238, 377
HpyCH4IV ACGT 1 cut(s) 612
HpyCH4V TGCA 4 cut(s) 58, 212, 424, 487
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 229, 659
HpyF3I CTNAG 1 cut(s) 753
HpySE526I ACGT 1 cut(s) 612
Hsp92II CATG 3 cut(s) 93, 391, 712
Kzo9I GATC 3 cut(s) 36, 172, 384
LmnI GCTCC 1 cut(s) 368
Lsp1109I GCAGC 4 cut(s) 284, 319, 709, 718
LweI GCATC 1 cut(s) 379
MaeI CTAG 2 cut(s) 545, 587
MaeII ACGT 1 cut(s) 612
MaeIII GTNAC 2 cut(s) 411, 719
MalI GATC 3 cut(s) 38, 174, 386
MboI GATC 3 cut(s) 36, 172, 384
MflI RGATCY 1 cut(s) 172
MhlI GDGCHC 3 cut(s) 365, 426, 752
MluCI AATT 6 cut(s) 44, 76, 427, 515, 566, 664
MlyI GAGTC 2 cut(s) 419, 501
MmeI TCCRAC 1 cut(s) 535
MnlI CCTC 5 cut(s) 94, 160, 209, 222, 514
MseI TTAA 2 cut(s) 351, 431
MspI CCGG 1 cut(s) 366
MspR9I CCNGG 1 cut(s) 367
Mva1269I GAATGC 1 cut(s) 733
MwoI GCNNNNNNNGC 3 cut(s) 167, 229, 659
NciI CCSGG 1 cut(s) 367
NcoI CCATGG 2 cut(s) 89, 708
NdeII GATC 3 cut(s) 36, 172, 384
NlaIII CATG 3 cut(s) 93, 391, 712
NlaIV GGNNCC 1 cut(s) 364
NmuCI GTSAC 2 cut(s) 411, 719
PctI GAATGC 1 cut(s) 733
PfeI GAWTC 2 cut(s) 301, 619
PkrI GCNGC 5 cut(s) 274, 309, 538, 699, 733
PleI GAGTC 2 cut(s) 418, 501
PpsI GAGTC 2 cut(s) 418, 501
Ppu21I YACGTR 1 cut(s) 613
PspN4I GGNNCC 1 cut(s) 364
PspPI GGNCC 2 cut(s) 452, 660
PsuI RGATCY 1 cut(s) 172
RsaI GTAC 4 cut(s) 253, 392, 398, 611
RsaNI GTAC 4 cut(s) 252, 391, 397, 610
SaqAI TTAA 2 cut(s) 351, 431
SatI GCNGC 5 cut(s) 273, 308, 537, 698, 732
Sau3AI GATC 3 cut(s) 36, 172, 384
Sau96I GGNCC 2 cut(s) 452, 660
SchI GAGTC 2 cut(s) 419, 501
ScrFI CCNGG 1 cut(s) 367
SduI GDGCHC 3 cut(s) 365, 426, 752
SetI ASST 8 cut(s) 13, 344, 350, 472, 565, 577, 615, 684
SfaNI GCATC 1 cut(s) 379
SfcI CTRYAG 1 cut(s) 145
SinI GGWCC 1 cut(s) 452
SmlI CTYRAG 2 cut(s) 32, 602
SmoI CTYRAG 2 cut(s) 32, 602
Sse9I AATT 6 cut(s) 44, 76, 427, 515, 566, 664
SsiI CCGC 2 cut(s) 504, 536
SspMI CTAG 2 cut(s) 545, 587
StyD4I CCNGG 1 cut(s) 365
StyI CCWWGG 2 cut(s) 89, 708
TaaI ACNGT 3 cut(s) 54, 238, 377
TaiI ACGT 1 cut(s) 615
TasI AATT 6 cut(s) 44, 76, 427, 515, 566, 664
TatI WGTACW 1 cut(s) 396
TauI GCSGC 1 cut(s) 539
TfiI GAWTC 2 cut(s) 301, 619
Tru1I TTAA 2 cut(s) 351, 431
Tru9I TTAA 2 cut(s) 351, 431
TseFI GTSAC 2 cut(s) 411, 719
TseI GCWGC 4 cut(s) 272, 307, 697, 731
Tsp45I GTSAC 2 cut(s) 411, 719
TspDTI ATGAA 4 cut(s) 20, 38, 645, 701
VneI GTGCAC 1 cut(s) 422
VpaK11BI GGWCC 1 cut(s) 452
XapI RAATTY 1 cut(s) 566
XcmI CCANNNNNNNNNTGG 1 cut(s) 670
XspI CTAG 2 cut(s) 545, 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.