Rh5AG261600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0023000
Physical Location & Seq
Forward (+)
34228239 .. 34228630
392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG261600.1

Sequence Viewer

Length: 360 bp
ATGGCAGCCAGCACTATTAGAAGTTTAAAATCTGTTCAACAAGCAGGACCAACACCATTAGAAGCTGAACCAGTTGCGTTGCAAGTGGATGAGAATAGGGGACTCCAACAATTTGAGGCTGATCAAGAAGCGGCTGAACTAGAAAAGTCGATTGAAGCTGAATTTGAAGCTCAACCACAACTAGGAGAAGAAAATCTTGAGCAGTACGTGAAGATTCACCAAGATGAAAATCTGGTCCAGAAAATGGCAGACTGGGCCAATTCTATTGTGGAGGAGCTAATGAATGATGAGCAGCCAAATACCATGGAAGTTGGTGACTGGAATGCTGCTGATTCAGATTTTGAGCACTTAGCATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.36

Weight (kDa)

4.05

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023000)

Species Orthologous Gene IDs
rosa_laevigata RLG00000033868
rosa_roxburghii Rroxscaffold_1G00042280
rosa_samantha Rh5AG261600 Rh5CG298800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 244
AciI CCGC 1 cut(s) 131
AcsI RAATTY 1 cut(s) 161
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 2 cut(s) 182, 244
AgsI TTSAA 3 cut(s) 38, 155, 167
AluBI AGCT 4 cut(s) 65, 158, 170, 277
AluI AGCT 4 cut(s) 65, 158, 170, 277
Alw21I GWGCWC 1 cut(s) 348
AoxI GGCC 1 cut(s) 255
ApeKI GCWGC 3 cut(s) 5, 292, 326
ApoI RAATTY 1 cut(s) 161
AspS9I GGNCC 3 cut(s) 47, 235, 255
AsuHPI GGTGA 2 cut(s) 209, 326
AvaII GGWCC 2 cut(s) 47, 235
Bbv12I GWGCWC 1 cut(s) 348
BbvI GCAGC 3 cut(s) 17, 304, 313
BclI TGATCA 1 cut(s) 121
BfaI CTAG 2 cut(s) 140, 182
BisI GCNGC 4 cut(s) 6, 132, 293, 327
BlsI GCNGC 4 cut(s) 7, 133, 294, 328
Bme18I GGWCC 2 cut(s) 47, 235
BmgT120I GGNCC 3 cut(s) 47, 235, 255
BmrI ACTGGG 1 cut(s) 262
BmuI ACTGGG 1 cut(s) 262
BpuEI CTTGAG 1 cut(s) 218
BsaAI YACGTR 1 cut(s) 208
BsaBI GATNNNNATC 1 cut(s) 228
BsaJI CCNNGG 1 cut(s) 303
Bsc4I CCNNNNNNNGG 2 cut(s) 182, 244
Bse1I ACTGG 3 cut(s) 71, 257, 323
Bse8I GATNNNNATC 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 303
BseGI GGATG 1 cut(s) 94
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 2 cut(s) 182, 244
BseNI ACTGG 3 cut(s) 71, 257, 323
BseRI GAGGAG 1 cut(s) 287
BseXI GCAGC 3 cut(s) 17, 304, 313
BshFI GGCC 1 cut(s) 257
BsiHKAI GWGCWC 1 cut(s) 348
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 2 cut(s) 182, 244
BsmFI GGGAC 1 cut(s) 114
BsmI GAATGC 1 cut(s) 328
BsnI GGCC 1 cut(s) 257
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 1 cut(s) 121
Bsp19I CCATGG 1 cut(s) 303
BspACI CCGC 1 cut(s) 131
BspANI GGCC 1 cut(s) 257
BsrI ACTGG 3 cut(s) 71, 257, 323
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 1 cut(s) 121
BssT1I CCWWGG 1 cut(s) 303
BstBAI YACGTR 1 cut(s) 208
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 1 cut(s) 349
BstDSI CCRYGG 1 cut(s) 303
BstF5I GGATG 1 cut(s) 94
BstKTI GATC 1 cut(s) 124
BstMBI GATC 1 cut(s) 121
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstV1I GCAGC 3 cut(s) 17, 304, 313
BsuRI GGCC 1 cut(s) 257
BtgI CCRYGG 1 cut(s) 303
BtsCI GGATG 1 cut(s) 94
Cac8I GCNNGC 1 cut(s) 10
Cfr13I GGNCC 3 cut(s) 47, 235, 255
Csp6I GTAC 1 cut(s) 205
CviAII CATG 1 cut(s) 304
CviJI RGCY 9 cut(s) 8, 65, 119, 134, 158, 170, 257, 277, 295
CviKI_1 RGCY 9 cut(s) 8, 65, 119, 134, 158, 170, 257, 277, 295
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 1 cut(s) 349
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
DraI TTTAAA 1 cut(s) 27
Eco130I CCWWGG 1 cut(s) 303
Eco47I GGWCC 2 cut(s) 47, 235
EcoT14I CCWWGG 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 303
FaeI CATG 1 cut(s) 307
FaiI YATR 1 cut(s) 305
FalI AAGNNNNNCTT 2 cut(s) 180, 212
FaqI GGGAC 1 cut(s) 114
FatI CATG 1 cut(s) 303
FbaI TGATCA 1 cut(s) 121
Fnu4HI GCNGC 4 cut(s) 6, 132, 293, 327
FokI GGATG 1 cut(s) 101
Fsp4HI GCNGC 4 cut(s) 6, 132, 293, 327
FspBI CTAG 2 cut(s) 140, 182
GluI GCNGC 4 cut(s) 6, 132, 293, 327
HaeIII GGCC 1 cut(s) 257
Hin1II CATG 1 cut(s) 307
HinfI GANTC 3 cut(s) 102, 214, 332
HphI GGTGA 2 cut(s) 209, 326
Hpy188I TCNGA 1 cut(s) 337
Hpy188III TCNNGA 3 cut(s) 125, 197, 238
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 1 cut(s) 82
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 1 cut(s) 349
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 1 cut(s) 307
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 1 cut(s) 121
LmnI GCTCC 1 cut(s) 274
LpnPI CCDG 7 cut(s) 22, 30, 84, 218, 238, 251, 304
Lsp1109I GCAGC 3 cut(s) 17, 304, 313
MaeI CTAG 2 cut(s) 140, 182
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 314
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 2 cut(s) 200, 223
MhlI GDGCHC 1 cut(s) 348
MluCI AATT 3 cut(s) 110, 161, 259
MlyI GAGTC 1 cut(s) 96
MmeI TCCRAC 1 cut(s) 130
MnlI CCTC 2 cut(s) 109, 265
MseI TTAA 1 cut(s) 26
MslI CAYNNNNRTG 1 cut(s) 222
Mva1269I GAATGC 1 cut(s) 328
MwoI GCNNNNNNNGC 1 cut(s) 254
NcoI CCATGG 1 cut(s) 303
NdeII GATC 1 cut(s) 121
NlaIII CATG 1 cut(s) 307
NmuCI GTSAC 1 cut(s) 314
PctI GAATGC 1 cut(s) 328
PfeI GAWTC 2 cut(s) 214, 332
PflMI CCANNNNNTGG 1 cut(s) 244
PkrI GCNGC 4 cut(s) 7, 133, 294, 328
PleI GAGTC 1 cut(s) 96
PpsI GAGTC 1 cut(s) 96
Ppu21I YACGTR 1 cut(s) 208
PspPI GGNCC 3 cut(s) 47, 235, 255
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 222
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 4 cut(s) 6, 132, 293, 327
Sau3AI GATC 1 cut(s) 121
Sau96I GGNCC 3 cut(s) 47, 235, 255
SchI GAGTC 1 cut(s) 96
SduI GDGCHC 1 cut(s) 348
SetI ASST 5 cut(s) 67, 160, 172, 210, 279
SinI GGWCC 2 cut(s) 47, 235
SmiMI CAYNNNNRTG 1 cut(s) 222
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 3 cut(s) 110, 161, 259
SsiI CCGC 1 cut(s) 131
SspMI CTAG 2 cut(s) 140, 182
StyI CCWWGG 1 cut(s) 303
TaiI ACGT 1 cut(s) 210
TaqI TCGA 1 cut(s) 149
TasI AATT 3 cut(s) 110, 161, 259
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 2 cut(s) 214, 332
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 3 cut(s) 5, 292, 326
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 2 cut(s) 240, 296
Van91I CCANNNNNTGG 1 cut(s) 244
VpaK11BI GGWCC 2 cut(s) 47, 235
XapI RAATTY 1 cut(s) 161
XcmI CCANNNNNNNNNTGG 1 cut(s) 265
XspI CTAG 2 cut(s) 140, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.