RLG00000034470

ARF guanine-nucleotide exchange factor GNOM-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0020707
Physical Location & Seq
Reverse (-)
43289212 .. 43292350
3139 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034470

Sequence Viewer

Length: 1221 bp
ATGGTGGATGTTCCACAGTTCAAGGCCCCAGTTTGGGAGACGAATTGGAGCAACTCCGAAAGAAGTGCGCTAAGGGTTTCTGAGAAAGGGTTGGAGTTCCTCCAAGGAACTCATCTCTTGCCTGATAAACTTGATCCTCAAAGTGTGGCCTGCTTTTTCAGGTATACAGCTGGACTAGACAAGAATCTTGTTGGGGATTTCTTGGGAAATCATGACGAATTTTGTGTTCAAGTTCTTCACAAATTTGCTGGTACCTTTGATTTCCAAGATATGAATTTGGATACTGCACTCCGCCTTTTCTTGGAGACATTTCGTTTGCCTGGAGAATCACAAAAGATACAAAGGGTTCTTGAAGCATTCTCAGAGATATACTACGAGCAATCACCTCTAATTCTAGCAAACAAGGATGCTGCTCTTCTGTTATTATATTCAATCATAATGCTCAATACAGATCAGCACAATGTTCAGGTGAAGAAGAAGATGACAGAGGAGGATTTCATTCGGAATAATAGACACATCAATGGAGGCAGTGATCTACCTCGAGATTTCCTGACAGAGCTTTATCACTCAATATGCATGAATGAGATTCGCACTACTCCAGAACAAGGTGCTGGTTATCCTGAGATGACCCCAAGCCGGTGGATTGATTTGATGCACAAATCCAAGAAAAATGCTCCATTCATTGAATCTGATTCCAGAGCCTACCTAGACCATGATATGTTTGCTATAATGTCTGGCCCTACAATTGCTGCCATCTCTGTGGTATTTGATCATGCAGAACATGAAGAGGTTTATCAAACATGCATTGATGGATTTTTAGCTATTGCAAAGATTTCAGCATGCCACCATCTTGAAGATGTACAAGATGATTTGGTTGTGTCTCTCTGTAAGTTCACAACTCTGTTAAACCCATCATCAGTTGAGGAACATGTGCTAGCCTTTGGTGATGACACAAAAGCTAGGATGTCAACTGTGACAGTTTTCACCATTGCCAATAGGTATGATTCATTGGATTGGAGAAGGTACAAGAGCTTAACTTGTCTTCCAACATGTTGGGGTCAGTGTCTGACACCATTGGACTGCTGCAAAATAAGGGCGTATCTCGAAGGGCGTCTTGAAACCGAGAATGTTGAGAAGGAGCTCCCAGTTGGCTTTGTTAACTCTATTAATACCCAAGCTGGAATTGACCTGAAAACCCTGTGTGAACATGATTTTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000278 GO:0000281 GO:0000578 GO:0000902 GO:0000910 GO:0000911 GO:0001736 GO:0001738 GO:0002009 GO:0003006 GO:0003674 GO:0005085 GO:0005086 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005829 GO:0005886 GO:0006810 GO:0006897 GO:0007049 GO:0007155 GO:0007164 GO:0007275 GO:0007389 GO:0008150 GO:0009605 GO:0009606 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009826 GO:0009880 GO:0009888 GO:0009914 GO:0009926 GO:0009942 GO:0009987 GO:0010008 GO:0010015 GO:0010053 GO:0010054 GO:0010087 GO:0010101 GO:0010102 GO:0010154 GO:0010274 GO:0010311 GO:0010540 GO:0010817 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016192 GO:0016197 GO:0019899 GO:0021700 GO:0022402 GO:0022414 GO:0022610 GO:0022622 GO:0030154 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032506 GO:0032509 GO:0032879 GO:0032989 GO:0040007 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046907 GO:0046983 GO:0048209 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048646 GO:0048729 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051049 GO:0051179 GO:0051234 GO:0051301 GO:0051641 GO:0051649 GO:0060341 GO:0060429 GO:0060560 GO:0060627 GO:0060918 GO:0061458 GO:0061640 GO:0065007 GO:0065008 GO:0065009 GO:0071554 GO:0071555 GO:0071695 GO:0071840 GO:0071944 GO:0071985 GO:0090558 GO:0090627 GO:0090696 GO:0090697 GO:0090698 GO:0097708 GO:0098588 GO:0098657 GO:0098772 GO:0098791 GO:0098805 GO:0099402 GO:1902410 GO:1903047 GO:1905392 GO:1905393
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
Sec7 Sec7_N

Protein Analysis

407

Amino Acids

46.27

Weight (kDa)

5.05

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sec7 PF01369 28 - 196 6.9e-65 Sec7 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020707)

Species Orthologous Gene IDs
rosa_laevigata RLG00000034470
rosa_multiflora Rmu_sc0000222.1_g000003 Rmu_sc0003113.1_g000008
rosa_samantha Rh2AG508300 Rh2CG493800
rosa_wichuraiana Rw7G035390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 251
AccB1I GGYRCC 1 cut(s) 251
AccI GTMKAC 1 cut(s) 164
AciI CCGC 1 cut(s) 292
AclWI GGATC 1 cut(s) 128
AcsI RAATTY 3 cut(s) 218, 242, 274
AcyI GRCGYC 1 cut(s) 1111
AfaI GTAC 3 cut(s) 253, 861, 1025
AfiI CCNNNNNNNGG 5 cut(s) 33, 34, 301, 605, 636
AflIII ACRYGT 2 cut(s) 928, 1049
AgsI TTSAA 7 cut(s) 22, 230, 353, 432, 686, 854, 1118
AjnI CCWGG 1 cut(s) 319
AluBI AGCT 7 cut(s) 170, 559, 821, 959, 1032, 1141, 1178
AluI AGCT 7 cut(s) 170, 559, 821, 959, 1032, 1141, 1178
Alw21I GWGCWC 1 cut(s) 1143
Alw26I GTCTC 3 cut(s) 32, 299, 885
AlwI GGATC 1 cut(s) 128
AlwNI CAGNNNCTG 1 cut(s) 1066
Ama87I CYCGRG 1 cut(s) 540
AoxI GGCC 3 cut(s) 24, 147, 736
ApeKI GCWGC 3 cut(s) 410, 749, 1083
ApoI RAATTY 3 cut(s) 218, 242, 274
ArsI GACNNNNNNTTYG 2 cut(s) 298, 330
AseI ATTAAT 1 cut(s) 1167
Asp718I GGTACC 1 cut(s) 251
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 2 cut(s) 25, 737
AsuHPI GGTGA 4 cut(s) 375, 481, 956, 976
AsuNHI GCTAGC 1 cut(s) 934
AvaI CYCGRG 1 cut(s) 540
BanI GGYRCC 1 cut(s) 251
BanII GRGCYC 1 cut(s) 1143
BbsI GAAGAC 1 cut(s) 1034
Bbv12I GWGCWC 1 cut(s) 1143
BbvI GCAGC 3 cut(s) 397, 736, 1070
BccI CCATC 4 cut(s) 761, 803, 855, 919
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BciT130I CCWGG 1 cut(s) 321
BciVI GTATCC 1 cut(s) 274
BclI TGATCA 1 cut(s) 769
BcoDI GTCTC 3 cut(s) 32, 299, 885
BfaI CTAG 5 cut(s) 176, 395, 707, 935, 960
BfuI GTATCC 1 cut(s) 274
BisI GCNGC 3 cut(s) 411, 750, 1084
BlsI GCNGC 3 cut(s) 412, 751, 1085
Bme1390I CCNGG 1 cut(s) 321
BmeT110I CYCGRG 1 cut(s) 540
BmgT120I GGNCC 2 cut(s) 25, 737
BmiI GGNNCC 2 cut(s) 27, 253
BmrFI CCNGG 1 cut(s) 321
BmrI ACTGGG 2 cut(s) 23, 1139
BmsI GCATC 2 cut(s) 397, 642
BmtI GCTAGC 1 cut(s) 938
BmuI ACTGGG 2 cut(s) 23, 1139
BpiI GAAGAC 1 cut(s) 1034
BpmI CTGGAG 2 cut(s) 342, 582
Bpu10I CCTNAGC 1 cut(s) 71
BsaHI GRCGYC 1 cut(s) 1111
BsaJI CCNNGG 1 cut(s) 103
Bsc4I CCNNNNNNNGG 5 cut(s) 33, 34, 301, 605, 636
Bse118I RCCGGY 1 cut(s) 636
Bse1I ACTGG 2 cut(s) 29, 1145
Bse3DI GCAATG 1 cut(s) 987
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 103
BseGI GGATG 3 cut(s) 13, 412, 969
BseLI CCNNNNNNNGG 5 cut(s) 33, 34, 301, 605, 636
BseMI GCAATG 1 cut(s) 987
BseMII CTCAG 3 cut(s) 72, 375, 612
BseNI ACTGG 2 cut(s) 29, 1145
BseRI GAGGAG 1 cut(s) 503
BseXI GCAGC 3 cut(s) 397, 736, 1070
BsgI GTGCAG 1 cut(s) 270
BshFI GGCC 3 cut(s) 26, 149, 738
BshNI GGYRCC 1 cut(s) 251
BsiHKAI GWGCWC 1 cut(s) 1143
BsiHKCI CYCGRG 1 cut(s) 540
BsiSI CCGG 1 cut(s) 637
BslI CCNNNNNNNGG 5 cut(s) 33, 34, 301, 605, 636
BsmAI GTCTC 3 cut(s) 32, 299, 885
BsmBI CGTCTC 1 cut(s) 32
BsmI GAATGC 1 cut(s) 356
BsnI GGCC 3 cut(s) 26, 149, 738
BsoBI CYCGRG 1 cut(s) 540
Bsp1286I GDGCHC 1 cut(s) 1143
Bsp1407I TGTACA 1 cut(s) 859
Bsp143I GATC 4 cut(s) 133, 451, 532, 769
BspACI CCGC 1 cut(s) 292
BspANI GGCC 3 cut(s) 26, 149, 738
BspCNI CTCAG 3 cut(s) 73, 374, 613
BspHI TCATGA 1 cut(s) 211
BspLI GGNNCC 2 cut(s) 27, 253
BspOI GCTAGC 1 cut(s) 938
BspPI GGATC 1 cut(s) 128
BspQI GCTCTTC 1 cut(s) 420
BspT107I GGYRCC 1 cut(s) 251
BsrDI GCAATG 1 cut(s) 987
BsrFI RCCGGY 1 cut(s) 636
BsrGI TGTACA 1 cut(s) 859
BsrI ACTGG 2 cut(s) 29, 1145
BssAI RCCGGY 1 cut(s) 636
BssECI CCNNGG 1 cut(s) 103
BssMI GATC 4 cut(s) 133, 451, 532, 769
BssNAI GTATAC 1 cut(s) 165
BssNI GRCGYC 1 cut(s) 1111
BssT1I CCWWGG 1 cut(s) 103
Bst1107I GTATAC 1 cut(s) 165
Bst2UI CCWGG 1 cut(s) 321
Bst4CI ACNGT 3 cut(s) 18, 973, 979
Bst6I CTCTTC 2 cut(s) 420, 780
BstACI GRCGYC 1 cut(s) 1111
BstAUI TGTACA 1 cut(s) 859
BstC8I GCNNGC 3 cut(s) 151, 841, 936
BstDEI CTNAG 4 cut(s) 71, 81, 361, 621
BstF5I GGATG 3 cut(s) 13, 412, 969
BstHHI GCGC 1 cut(s) 70
BstKTI GATC 4 cut(s) 136, 454, 535, 772
BstMAI GTCTC 3 cut(s) 32, 299, 885
BstMBI GATC 4 cut(s) 133, 451, 532, 769
BstNI CCWGG 1 cut(s) 321
BstNSI RCATGY 4 cut(s) 804, 843, 932, 1053
BstSCI CCNGG 1 cut(s) 319
BstV1I GCAGC 3 cut(s) 397, 736, 1070
BstV2I GAAGAC 1 cut(s) 1034
BstXI CCANNNNNNTGG 3 cut(s) 639, 760, 1053
BstZ17I GTATAC 1 cut(s) 165
BsuI GTATCC 1 cut(s) 274
BsuRI GGCC 3 cut(s) 26, 149, 738
BtsCI GGATG 3 cut(s) 13, 412, 969
BtsI GCAGTG 1 cut(s) 535
BtsIMutI CAGTG 2 cut(s) 535, 1067
Cac8I GCNNGC 3 cut(s) 151, 841, 936
CaiI CAGNNNCTG 1 cut(s) 1066
CciI TCATGA 1 cut(s) 211
CfoI GCGC 1 cut(s) 70
Cfr10I RCCGGY 1 cut(s) 636
Cfr13I GGNCC 2 cut(s) 25, 737
CseI GACGC 1 cut(s) 1100
Csp6I GTAC 3 cut(s) 252, 860, 1024
CviQI GTAC 3 cut(s) 252, 860, 1024
DdeI CTNAG 4 cut(s) 71, 81, 361, 621
DpnI GATC 4 cut(s) 135, 453, 534, 771
DpnII GATC 4 cut(s) 133, 451, 532, 769
Eam1104I CTCTTC 2 cut(s) 420, 780
EarI CTCTTC 2 cut(s) 420, 780
EciI GGCGGA 1 cut(s) 281
Ecl136II GAGCTC 1 cut(s) 1141
Eco130I CCWWGG 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 1143
Eco53kI GAGCTC 1 cut(s) 1141
Eco88I CYCGRG 1 cut(s) 540
EcoICRI GAGCTC 1 cut(s) 1141
EcoO109I RGGNCCY 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 103
EcoT22I ATGCAT 2 cut(s) 578, 806
EcoT38I GRGCYC 1 cut(s) 1143
ErhI CCWWGG 1 cut(s) 103
Esp3I CGTCTC 1 cut(s) 32
FalI AAGNNNNNCTT 2 cut(s) 1098, 1130
FbaI TGATCA 1 cut(s) 769
FblI GTMKAC 1 cut(s) 164
Fnu4HI GCNGC 3 cut(s) 411, 750, 1084
FokI GGATG 3 cut(s) 20, 419, 976
FriOI GRGCYC 1 cut(s) 1143
Fsp4HI GCNGC 3 cut(s) 411, 750, 1084
FspBI CTAG 5 cut(s) 176, 395, 707, 935, 960
GlaI GCGC 1 cut(s) 69
GluI GCNGC 3 cut(s) 411, 750, 1084
GsuI CTGGAG 2 cut(s) 342, 582
HaeIII GGCC 3 cut(s) 26, 149, 738
HapII CCGG 1 cut(s) 637
HgaI GACGC 1 cut(s) 1100
HhaI GCGC 1 cut(s) 70
Hin1I GRCGYC 1 cut(s) 1111
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HincII GTYRAC 2 cut(s) 969, 1159
HindII GTYRAC 2 cut(s) 969, 1159
HinfI GANTC 6 cut(s) 184, 326, 586, 686, 692, 1004
HpaI GTTAAC 1 cut(s) 1159
HpaII CCGG 1 cut(s) 637
HphI GGTGA 4 cut(s) 375, 481, 956, 976
Hpy166II GTNNAC 5 cut(s) 165, 894, 969, 1159, 1205
Hpy188I TCNGA 6 cut(s) 58, 82, 364, 504, 691, 1068
Hpy8I GTNNAC 5 cut(s) 165, 894, 969, 1159, 1205
HpyAV CCTTC 3 cut(s) 1014, 1100, 1129
HpyCH4III ACNGT 3 cut(s) 18, 973, 979
HpyCH4V TGCA 7 cut(s) 287, 576, 655, 776, 804, 827, 1086
HpyF3I CTNAG 4 cut(s) 71, 81, 361, 621
Hsp92I GRCGYC 1 cut(s) 1111
HspAI GCGC 1 cut(s) 68
KpnI GGTACC 1 cut(s) 255
Ksp22I TGATCA 1 cut(s) 769
KspAI GTTAAC 1 cut(s) 1159
Kzo9I GATC 4 cut(s) 133, 451, 532, 769
LguI GCTCTTC 1 cut(s) 420
LmnI GCTCC 4 cut(s) 48, 679, 1138, 1146
Lsp1109I GCAGC 3 cut(s) 397, 736, 1070
LweI GCATC 2 cut(s) 397, 642
MaeI CTAG 5 cut(s) 176, 395, 707, 935, 960
MaeIII GTNAC 1 cut(s) 973
MalI GATC 4 cut(s) 135, 453, 534, 771
MboI GATC 4 cut(s) 133, 451, 532, 769
MboII GAAGA 8 cut(s) 227, 407, 484, 487, 490, 797, 866, 1034
MfeI CAATTG 1 cut(s) 744
MhlI GDGCHC 1 cut(s) 1143
MluCI AATT 7 cut(s) 43, 218, 242, 274, 390, 744, 1182
MmeI TCCRAC 2 cut(s) 72, 1070
MnlI CCTC 9 cut(s) 110, 147, 396, 481, 484, 518, 549, 781, 916
Mph1103I ATGCAT 2 cut(s) 578, 806
MseI TTAA 5 cut(s) 905, 1034, 1158, 1167, 1219
MslI CAYNNNNRTG 2 cut(s) 519, 758
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 1 cut(s) 637
MspR9I CCNGG 1 cut(s) 321
MunI CAATTG 1 cut(s) 744
Mva1269I GAATGC 1 cut(s) 356
MvaI CCWGG 1 cut(s) 321
NdeII GATC 4 cut(s) 133, 451, 532, 769
NheI GCTAGC 1 cut(s) 934
NlaIV GGNNCC 2 cut(s) 27, 253
NmuCI GTSAC 1 cut(s) 973
NsiI ATGCAT 2 cut(s) 578, 806
NspI RCATGY 4 cut(s) 804, 843, 932, 1053
PaeI GCATGC 1 cut(s) 843
PaeR7I CTCGAG 1 cut(s) 540
PagI TCATGA 1 cut(s) 211
PciI ACATGT 2 cut(s) 928, 1049
PciSI GCTCTTC 1 cut(s) 420
PctI GAATGC 1 cut(s) 356
PfeI GAWTC 6 cut(s) 184, 326, 586, 686, 692, 1004
PkrI GCNGC 3 cut(s) 412, 751, 1085
PscI ACATGT 2 cut(s) 928, 1049
PshBI ATTAAT 1 cut(s) 1167
Psp124BI GAGCTC 1 cut(s) 1143
Psp6I CCWGG 1 cut(s) 319
PspGI CCWGG 1 cut(s) 319
PspN4I GGNNCC 2 cut(s) 27, 253
PspPI GGNCC 2 cut(s) 25, 737
PstNI CAGNNNCTG 1 cut(s) 1066
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 3 cut(s) 253, 861, 1025
RsaNI GTAC 3 cut(s) 252, 860, 1024
RseI CAYNNNNRTG 2 cut(s) 519, 758
SacI GAGCTC 1 cut(s) 1143
SapI GCTCTTC 1 cut(s) 420
SaqAI TTAA 5 cut(s) 905, 1034, 1158, 1167, 1219
SatI GCNGC 3 cut(s) 411, 750, 1084
Sau3AI GATC 4 cut(s) 133, 451, 532, 769
Sau96I GGNCC 2 cut(s) 25, 737
ScrFI CCNGG 1 cut(s) 321
SduI GDGCHC 1 cut(s) 1143
SfaNI GCATC 2 cut(s) 397, 642
Sfr274I CTCGAG 1 cut(s) 540
SlaI CTCGAG 1 cut(s) 540
SmiMI CAYNNNNRTG 2 cut(s) 519, 758
SmlI CTYRAG 1 cut(s) 540
SmoI CTYRAG 1 cut(s) 540
SphI GCATGC 1 cut(s) 843
Sse9I AATT 7 cut(s) 43, 218, 242, 274, 390, 744, 1182
SsiI CCGC 1 cut(s) 292
SspMI CTAG 5 cut(s) 176, 395, 707, 935, 960
SstI GAGCTC 1 cut(s) 1143
StyD4I CCNGG 1 cut(s) 319
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 3 cut(s) 18, 973, 979
TaqI TCGA 2 cut(s) 541, 1104
TasI AATT 7 cut(s) 43, 218, 242, 274, 390, 744, 1182
TatI WGTACW 1 cut(s) 859
TfiI GAWTC 6 cut(s) 184, 326, 586, 686, 692, 1004
Tru1I TTAA 5 cut(s) 905, 1034, 1158, 1167, 1219
Tru9I TTAA 5 cut(s) 905, 1034, 1158, 1167, 1219
TscAI CASTG 2 cut(s) 535, 1067
TseFI GTSAC 1 cut(s) 973
TseI GCWGC 3 cut(s) 410, 749, 1083
Tsp45I GTSAC 1 cut(s) 973
TspDTI ATGAA 6 cut(s) 287, 487, 593, 670, 798, 996
TspRI CASTG 2 cut(s) 535, 1067
VspI ATTAAT 1 cut(s) 1167
XapI RAATTY 3 cut(s) 218, 242, 274
XceI RCATGY 4 cut(s) 804, 843, 932, 1053
XhoI CTCGAG 1 cut(s) 540
XmiI GTMKAC 1 cut(s) 164
XspI CTAG 5 cut(s) 176, 395, 707, 935, 960
Zsp2I ATGCAT 2 cut(s) 578, 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.